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ShareScore release 0.9.0
Dataset results
20 results for “Secondary cell wall”
Atomistic, Macromolecular Model of the Populus Secondary Cell Wall Informed by Solid-State NMR
<p>Solid-state NMR dataset used to inform molecular model of the Populus secondary cell wall.</p> <p>Contains:</p> <p>- 2D through-bond and through-space ssNMR data on 13C-enriched Populus wood. Data used to inform spectral deconvolution of selective 1D spin-diffusion data</p> <p>- 2D gelHSQC NMR data for understanding of lignin composition</p> <p>- MultiCP-1D-DARR datasets on 5 replicates. Includes raw NMR data and ascii files of processed spectra. For each replicate, three experiments are conducted: non-selective 1D MultiCP-DARR, 22ppm selective MultiCP-DARR, and 150ppm selective MultiCP-DARR. 13C-13C spin-diffusion mixing times ranged from 0.001 to 5000 ms.</p> <p>- Excel files containing tabulated deconvoluted signal areas, and averages for key signal groups.</p> <p>- Excel files containing tabulated magnetization recovery values for each signal and signal groups for all replicates. Averaged values for X2C, X2L, L2C and L2X at the longest mixing times (see manuscript) are used as key metrics for evaluating molecular models.</p> <p>- Excel files containing tabulated T1-adjusted spin-diffusion rate constants for each replicate, and key averages.</p>
Simulation Input Data for "Quantifying acetylation-induced changes in the plant secondary cell wall structure and dynamics"
<p>This is the reduced data behind an upcoming manuscript investigating impact of acetylation on plant secondary cell wall. The data is taken directly from the directory structure that contains both the simulation and analysis, with excluded trajectory files and intermediate products to fit within the zenodo upload limit. The tar command used to generate this tarball was: </p> <p> </p> <pre><code>tar -zcvf Acetylatedcellwall.tar.gz --exclude="*BAK" --exclude="*dcd" --exclude="*poster*" --exclude="*old" --exclude="*out" --exclude="*vel" --exclude="*ppm" --exclude="*mp4" --exclude="*txt" --exclude="*tga" --exclude="*vmd" --exclude="*log" --exclude="fixed*png" --exclude="frame*png" --exclude="nonacetylation*png" . </code></pre>
Illumina miRNA profiles with anatomical study revealed involvement of miR397a in Citrus adaptation to long-term B-toxicity via modulating secondary cell wall biosynthesis
GEO Series GSE74434. Citrus sinensis; Citrus maxima. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparative genome analysis of grapevine trunk pathogens reveals distinctive expansion of gene families associated with cell wall degradation, secondary metabolism, and induction of cell death
GEO Series GSE64404. Phaeoacremonium minimum. 9 samples. Type: Expression profiling by high throughput sequencing.
A natural mutation of the NST1 gene arrests secondary cell wall biosynthesis in the seed coat of hull-less pumpkins
GEO Series GSE205063. Cucurbita pepo. 18 samples. Type: Expression profiling by high throughput sequencing.
The stem cell-type transcriptome of bioenergy sorghum reveals the spatial regulation of secondary cell wall networks
GEO Series GSE218642. Sorghum bicolor. 24 samples. Type: Expression profiling by high throughput sequencing.
Cytokinins control secondary cell wall formation in the inflorescence stem of Arabidopsis
GEO Series GSE300572. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Ectopic expression of FvVND4c promotes secondary cell wall thickening and flavonoid accumulation in Fragaria vesca
GEO Series GSE225542. Fragaria vesca. 8 samples. Type: Expression profiling by high throughput sequencing.
AtC3H14, a direct target of MYB46, suppress cell elongation and involved in the secondary wall formation.
GEO Series GSE23801. Arabidopsis thaliana. 2 samples. Type: Expression profiling by array.
Defects in secondary cell-wall synthesis mitigate the effects of lincomycin on early chloroplast development
GEO Series GSE130337. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomics and metabolomics profiling in Flax stem tissues containing contrasted secondary cell wall architectures.
GEO Series GSE29345. Linum usitatissimum. 32 samples. Type: Expression profiling by array.
Florigen Accelerates Secondary Cell Wall Biogenesis to Harmonize Vascular Maturation with flowering and reproductive phase Development
GEO Series GSE132280. Solanum lycopersicum. 32 samples. Type: Expression profiling by high throughput sequencing.
cDNA array expression in cotton fiber secondary cell wall development from two germplasm lines that differ in fiber strength
GEO Series GSE30944. Gossypium hirsutum. 15 samples. Type: Expression profiling by array.
OsbHLH002-OSH1 module orchetrates the secondary cell wall formation in rice (RNA-Seq)
GEO Series GSE233938. Oryza sativa. 9 samples. Type: Expression profiling by high throughput sequencing.
Class II KNOX and BELL TALE-class HD genes give insights into the evolution of secondary cell wall development and pectin biosynthesis during land plant evolution
GEO Series GSE242822. Marchantia polymorpha. 2 samples. Type: Expression profiling by high throughput sequencing.
Comparative analysis of transcriptome profiles of G. hirsutum L. acc. TM-1 and its immature fber mutant during fiber secondary cell wall development stages
GEO Series GSE49617. Gossypium hirsutum. 15 samples. Type: Expression profiling by array.
OsbHLH002-OSH1 module orchetrates the secondary cell wall formation in rice (ChIP-Seq)
GEO Series GSE233939. Oryza sativa. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Induction of secondary cell wall biosynthesis genes and their regulators by melatonin in Glycine max
GEO Series GSE234038. Glycine max. 27 samples. Type: Expression profiling by high throughput sequencing.
Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
GEO Series GSE6153. Arabidopsis thaliana. 2 samples. Type: Expression profiling by array.
AtMAN6 coordinates cell growth and secondary cell wall formation in xylem development
GEO Series GSE243854. Arabidopsis thaliana. 5 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.