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11 results for “Segformer”
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/damaged buildings in RGB 768x768 high-res. images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/damaged buildings in RGB 768x768 high-res. images</strong></em></p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://arxiv.org/abs/1911.09296</p> <p>These <em><strong>SegFormer </strong></em>model data are based on 1m spatial footprint images and associated labels of undamaged/damaged buildings.</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:<br> no-damage<br> minor-damage<br> major-damage<br> unclassified</p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>References<br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Ritwik Gupta, Bryce Goodman, Nirav Patel, Ricky Hosfelt, Sandra Sajeev, Eric Heim, Jigar Doshi, Keane Lucas, Howie Choset, and Matthew Gaston. Creating xbd: A dataset for assessing building damage from satellite imagery. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, June 2019. https://arxiv.org/abs/1911.09296</p>
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/buildings in RGB 768x768 high-res. images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/buildings in RGB 768x768 high-res. images</strong></em></p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://arxiv.org/abs/1911.09296</p> <p>These <em><strong>SegFormer </strong></em>model data are based on 1m spatial footprint images and associated labels of buildings.</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:<br> other<br> building</p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>References<br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Ritwik Gupta, Bryce Goodman, Nirav Patel, Ricky Hosfelt, Sandra Sajeev, Eric Heim, Jigar Doshi, Keane Lucas, Howie Choset, and Matthew Gaston. Creating xbd: A dataset for assessing building damage from satellite imagery. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, June 2019. https://arxiv.org/abs/1911.09296</p>
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/5-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/5-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Segformer model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:</p> <p>water<br> whitewater<br> sediment<br> other_bare_natural_terrain<br> other<br> </p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p> </p> <p><strong>References</strong><br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. et al. A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. Sci Data 10, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p> <p> </p>
Doodleverse/Segmentation Zoo/Seg2Map Segformer models for Chesapeake/7-class segmentation of RGB 512x512 high-res. images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map Segformer models for Chesapeake/7-class segmentation of RGB 512x512 high-res. images</strong></em></p> <p>These Segformer model data are based on Chesapeake Land Cover images and associated labels.</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://lila.science/datasets/chesapeakelandcover</p> <p>Image size used by model: 512 x 512 x 3 pixels</p> <p>classes:<br> water<br> tree_canopy_forest<br> low_vegetation_field<br> barren land<br> impervious_other<br> impervious_road<br> no_data</p> <p><br> File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>References<br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Robinson C, Hou L, Malkin K, Soobitsky R, Czawlytko J, Dilkina B, Jojic N. Large Scale High-Resolution Land Cover Mapping with Multi-Resolution Data. Proceedings of the 2019 Conference on Computer Vision and Pattern Recognition (CVPR 2019)</p>
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/8-class segmentation of RGB 768x768 NAIP images
<p><em><strong>Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for CoastTrain/8-class segmentation of RGB 768x768 NAIP images</strong></em></p> <p>These Segformer model data are based on Coast Train images and associated labels. https://coasttrain.github.io/CoastTrain/docs/Version%201:%20March%202022/data</p> <p>Models have been created using Segmentation Gym* using the following dataset**: https://doi.org/10.1038/s41597-023-01929-2</p> <p>Image size used by model: 768 x 768 x 3 pixels</p> <p>classes:</p> <p>water<br> whitewater<br> sediment<br> other_bare_natural_terrain<br> marsh_vegetation<br> terrestrial_vegetation<br> agricultural<br> development</p> <p>File descriptions</p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p> </p> <p><strong>References</strong><br> *Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**Buscombe, D., Wernette, P., Fitzpatrick, S. et al. A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments. Sci Data 10, 46 (2023). https://doi.org/10.1038/s41597-023-01929-2</p> <p> </p>
Doodleverse/Segmentation Gym SegFormer models for 2-class (wood, other) segmentation of RGB aerial orthomosaic imagery
<p><strong>Doodleverse/Segmentation Gym SegFormer models for 2-class (wood, other) segmentation of RGB aerial orthomosaic imagery</strong></p> <p>This model release is part of the Doodleverse: https://github.com/Doodleverse</p> <p>These Residual-UNet model data are based on RGB (red, green, and blue) images of alluvial river corridors and associated labels. Models are designed to identify subaerial accumulations of large woody debris in orthomosaic imagery. Models have been created using Segmentation Gym* using a dataset of images published here:</p> <p><em>Ritchie, A.C., Curran, C.A., Magirl, C.S., Bountry, J.A., Hilldale, R.C., Randle, T.J., and Duda, J.J., 2018, Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals: U.S. Geological Survey data release, https://doi.org/10.5066/F7PG1QWC.</em></p> <p>Classes: {0=other, 1=large woody debris / driftwood}. See https://github.com/Doodleverse for more information about how this model was trained, and how to use it for inference</p> <p><strong>File descriptions</strong></p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, </p> <p>1. BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU<br> 2. sample_images.zip contains a few example input files, for model testing</p> <p>3. example_validation_outputs.zip contain 50 example validation outputs, consisting of images of ground truth (right) and model output (left). This provides a visually interpretable product to assess model accuracy</p> <p> </p> <p>References</p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>**<em>Ritchie, A.C., Curran, C.A., Magirl, C.S., Bountry, J.A., Hilldale, R.C., Randle, T.J., and Duda, J.J., 2018, Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals: U.S. Geological Survey data release, https://doi.org/10.5066/F7PG1QWC.</em></p>
Doodleverse/Segmentation Gym SegFormer models for 4-class (other, water, sediment, wood) segmentation of RGB aerial orthomosaic imagery
<p><strong>Doodleverse/Segmentation Gym SegFormer models for 4-class (other, water, sediment, wood) segmentation of RGB aerial orthomosaic imagery</strong></p> <p>This model release is part of the Doodleverse: https://github.com/Doodleverse</p> <p>These Residual-UNet model data are based on RGB (red, green, and blue) images of alluvial river corridors and associated labels. Models are designed to identify water, wood, sediment, and other in orthomosaic imagery. Models have been created using Segmentation Gym* using a dataset of images published here:</p> <p><em>Ritchie, A.C., Curran, C.A., Magirl, C.S., Bountry, J.A., Hilldale, R.C., Randle, T.J., and Duda, J.J., 2018, Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals: U.S. Geological Survey data release, https://doi.org/10.5066/F7PG1QWC.</em></p> <p>Classes: {0=other, 1=water, 2=sediment, 3=large woody debris / driftwood}. See https://github.com/Doodleverse for more information about how this model was trained, and how to use it for inference</p> <p>File descriptions</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, </p> <p>1. BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU<br> 2. sample_images.zip contains a few example input files, for model testing</p> <p>References</p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p>
Doodleverse/Segmentation Gym SegFormer models for 2-class (other, sediment) segmentation of RGB aerial orthomosaic imagery
<p><strong>Doodleverse/Segmentation Gym SegFormer models for 2-class (other, sediment) segmentation of RGB aerial orthomosaic imagery</strong></p> <p>This model release is part of the Doodleverse: https://github.com/Doodleverse</p> <p>These Residual-UNet model data are based on RGB (red, green, and blue) images of alluvial river corridors and associated labels. Models are designed to identify water, wood, sediment, and other in orthomosaic imagery. Models have been created using Segmentation Gym* using a dataset of images published here:</p> <p><em>Ritchie, A.C., Curran, C.A., Magirl, C.S., Bountry, J.A., Hilldale, R.C., Randle, T.J., and Duda, J.J., 2018, Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals: U.S. Geological Survey data release, https://doi.org/10.5066/F7PG1QWC.</em></p> <p>Classes: {0=other, 1=sediment}. See https://github.com/Doodleverse for more information about how this model was trained, and how to use it for inference</p> <p>File descriptions</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, </p> <p>1. BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU<br> 2. sample_images.zip contains a few example input files, for model testing</p> <p>References</p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p>
Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 3-band (RGB) images of coasts.
<p><em><strong>Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 3-band (RGB) images of coasts.</strong></em></p> <p>These Segformer model data are based on RGB (red, green, and blue) images of coasts and associated labels.</p> <p>Models have been created using Segmentation Gym* using the following datasets**: <a href="https://doi.org/10.5281/zenodo.7335647">https://doi.org/10.5281/zenodo.7335647</a> and ***https://doi.org/10.5281/zenodo.8011926. Those datasets have been combined and the training and validation images and labels are provided here.</p> <p>Classes: {0=water, 1=whitewater, 2=sediment, 3=other}</p> <p><strong>Model validation accuracy statistics</strong></p> <p>model name: overall accuracy, mean frequency weighted IoU, mean IoU, Matthews correlation. Bold indicates best overall</p> <ul> <li><strong>v5: .94, .90, .64, .87</strong></li> <li>v6: .93, .89, .63, .87</li> <li>v7: .92, .88, .61, .84</li> <li>v8: .93, .89, .63, .87</li> <li>v9: .92, .88, .62, .85</li> <li>v10: .93, .89, .63, .86</li> </ul> <p> </p> <p><strong>File descriptions</strong></p> <p>For each model, there are 5 files with the same root name:</p> <p>1. <strong>'.json' </strong>config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2.<strong> '.h5'</strong> weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3.<strong> '_modelcard.json'</strong> model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. <strong> '_model_history.npz'</strong> model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. <strong> '.png'</strong> model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>This is a sister model to this set of Residual UNets: Buscombe, Daniel. (2022). Doodleverse/Segmentation Zoo Res-UNet models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 3-band (RGB) images of coasts. (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6950472</p> <p><strong>References</strong></p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. <a href="https://doi.org/10.1029/2022EA002332">https://doi.org/10.1029/2022EA002332</a> See: <a href="https://github.com/Doodleverse/segmentation_gym">https://github.com/Doodleverse/segmentation_gym</a></p> <p>** Buscombe, Daniel, Goldstein, Evan, Bernier, Julie, Bosse, Stephen, Colacicco, Rosa, Corak, Nick, Fitzpatrick, Sharon, del Jesús González Guillén, Anais, Ku, Venus, Paprocki, Julie, Platt, Lindsay, Steele, Bethel, Wright, Kyle, & Yasin, Brandon. (2022). Images and 4-class labels for semantic segmentation of Sentinel-2 and Landsat RGB satellite images of coasts (water, whitewater, sediment, other) (v1.0) [Data set]. Zenodo. <a href="https://doi.org/10.5281/zenodo.7335647">https://doi.org/10.5281/zenodo.7335647</a></p> <p>***Buscombe, Daniel. (2023). June 2023 Supplement Images and 4-class labels for semantic segmentation of Sentinel-2 and Landsat RGB, NIR, and SWIR satellite images of coasts (water, whitewater, sediment, other) (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.8011926 </p> <p> </p> <p> </p>
Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 MNDWI images of coasts.
<p><em><strong>Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 MNDWI images of coasts.</strong></em></p> <p>Models have been created using Segmentation Gym* using the following datasets ** https://zenodo.org/record/7384263 and ***: https://doi.org/10.5281/zenodo.7335647. Those datasets have been combined and the training and validation images and labels are provided here.</p> <p>Classes: {0=water, 1=whitewater, 2=sediment, 3=other}</p> <p><strong>Model validation accuracy statistics</strong></p> <p>model name: overall accuracy, mean frequency weighted IoU, mean IoU, Matthews correlation. Bold indicates best overall</p> <p> v2: 0.808, 0.7309, 0.47864, 0.656<br> v3: 0.809, 0.7302, 0.4982, 0.664</p> <p><strong>File descriptions</strong></p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>This is a sister model to these sets of Residual UNets:</p> <p> https://zenodo.org/record/7352850<br> https://zenodo.org/record/7557080</p> <p><strong>References</strong></p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>** Buscombe, Daniel. (2022). Images and 2-class labels for semantic segmentation of Sentinel-2 and Landsat RGB, NIR, and SWIR satellite images of coasts (water, other) (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7384263</p> <p>***Coast Train data release: Wernette, P.A., Buscombe, D.D., Favela, J., Fitzpatrick, S., and Goldstein E., 2022, Coast Train--Labeled imagery for training and evaluation of data-driven models for image segmentation: U.S. Geological Survey data release, https://doi.org/10.5066/P91NP87I. See https://coasttrain.github.io/CoastTrain/ for more information</p> <p>***Buscombe, Daniel. (2023). June 2023 Supplement Images and 4-class labels for semantic segmentation of Sentinel-2 and Landsat RGB, NIR, and SWIR satellite images of coasts (water, whitewater, sediment, other) (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.8011926 </p>
Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 NDWI images of coasts.
<p><strong>Doodleverse/CoastSeg Segformer models for 4-class (water, whitewater, sediment and other) segmentation of Sentinel-2 and Landsat-7/8 NDWI images of coasts.</strong></p> <p>Models have been created using Segmentation Gym* using the following datasets ** https://zenodo.org/record/7384263 and ***: https://doi.org/10.5281/zenodo.7335647. Those datasets have been combined and the training and validation images and labels are provided here.</p> <p>Classes: {0=water, 1=whitewater, 2=sediment, 3=other}</p> <p><strong>Model validation accuracy statistics</strong></p> <p>model name: overall accuracy, mean frequency weighted IoU, mean IoU, Matthews correlation. Bold indicates best overall</p> <table> <tbody> <tr> <td>0.896016693115234</td> <td>0.832759195999637</td> <td>0.565748652153519</td> <td>0.806139409136944</td> </tr> </tbody> </table> <table> <tbody> <tr> <td>0.906008201175266</td> <td>0.847625161837392</td> <td>0.593821675882991</td> <td>0.819790462192222</td> </tr> </tbody> </table> <table> <tbody> <tr> <td>0.903999212053087</td> <td>0.844255821722932</td> <td>0.577444030164045</td> <td>0.813646408575</td> </tr> </tbody> </table> <p> </p> <p><strong>File descriptions</strong></p> <p>For each model, there are 5 files with the same root name:</p> <p>1. '.json' config file: this is the file that was used by Segmentation Gym* to create the weights file. It contains instructions for how to make the model and the data it used, as well as instructions for how to use the model for prediction. It is a handy wee thing and mastering it means mastering the entire Doodleverse.</p> <p>2. '.h5' weights file: this is the file that was created by the Segmentation Gym* function `train_model.py`. It contains the trained model's parameter weights. It can called by the Segmentation Gym* function `seg_images_in_folder.py`. Models may be ensembled.</p> <p>3. '_modelcard.json' model card file: this is a json file containing fields that collectively describe the model origins, training choices, and dataset that the model is based upon. There is some redundancy between this file and the `config` file (described above) that contains the instructions for the model training and implementation. The model card file is not used by the program but is important metadata so it is important to keep with the other files that collectively make the model and is such is considered part of the model</p> <p>4. '_model_history.npz' model training history file: this numpy archive file contains numpy arrays describing the training and validation losses and metrics. It is created by the Segmentation Gym function `train_model.py`</p> <p>5. '.png' model training loss and mean IoU plot: this png file contains plots of training and validation losses and mean IoU scores during model training. A subset of data inside the .npz file. It is created by the Segmentation Gym function `train_model.py`</p> <p>Additionally, BEST_MODEL.txt contains the name of the model with the best validation loss and mean IoU</p> <p>This is a sister model to these sets of Residual UNets:</p> <p>https://zenodo.org/record/7557072<br> https://zenodo.org/record/7352859</p> <p><strong>References</strong></p> <p>*Segmentation Gym: Buscombe, D., & Goldstein, E. B. (2022). A reproducible and reusable pipeline for segmentation of geoscientific imagery. Earth and Space Science, 9, e2022EA002332. https://doi.org/10.1029/2022EA002332 See: https://github.com/Doodleverse/segmentation_gym</p> <p>** https://zenodo.org/record/7384263</p> <p>***Buscombe, Daniel. (2023). June 2023 Supplement Images and 4-class labels for semantic segmentation of Sentinel-2 and Landsat RGB, NIR, and SWIR satellite images of coasts (water, whitewater, sediment, other) (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.8011926 </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.