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7 results for “Serratia plymuthica”
The locus tags and annotation in Serratia plymuthica UBCF_13 genome
<p><b>Background:</b> The <i>Serratia plymuthica</i> UBCF_13 is a phylloplane associated plant bacterium showing antifungal activity. Whole genome sequence provides information to get more insight about evolutionary study, unique traits in the genome and possibility to explore potential of this microorganism for future study. Here, we report the genome sequence of <i>S. plymuthica </i>UBCF_13 and the comparison with other seventeen strain.</p> <p><b>Methods:</b> Continuous short reads were attained from Illumina sequencing runs and reads of 150 bp were merged into a single dataset. A pan-genome based method was used to identify the core-genome of <i>S. plymuthica </i>species and the unique gene in UBCF-13.</p> <p><b>Results:</b> Assembled Illumina reads of <i>S. plymuthica </i>strain UBCF_13 genome was produced a 5.46 Mb circular genome sequence. 3315 genes were found to belong to the core-genome sheared by the 18 strains evaluated. The UBCF_13 genome harbors 488 unique genes, where 300 of which only can be found in this strain. The raw and assembled data is available via NCBI Short Read Archive (accession Number: SRR15012717) and genome database (accession number: CP068771)</p>
Gene presence absence in Serratia plymuthica strains
<p><b>Background:</b> The <i>Serratia plymuthica</i> UBCF_13 is a phylloplane associated plant bacterium showing antifungal activity. Whole genome sequence provides information to get more insight about evolutionary study, unique traits in the genome and possibility to explore potential of this microorganism for future study. Here, we report the genome sequence of <i>S. plymuthica </i>UBCF_13 and the comparison with other seventeen strains.</p> <p><b>Methods:</b> A pan-genome based method was used to identify the core-genome and the the gene presence or absence in of the <i>S. plymuthica </i>strains</p> <p><b>Results:</b> The pan-genome idenfied the gene presence and absence in <em>the S. plymuthica </em>strains. The total genes was 10455. Comparative genomics analysis revealed 3.315 core proteins/ genes shared among 18 strains. The genome of the UBCF_13 harbors 488 unique genes, of which 300 genes are only contained by this strain.</p>
Gene presence absence in Serratia plymuthica strains
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The locus tags and annotation in Serratia plymuthica UBCF_13 genome
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Effect of deletion of the ipdc gene, involved in indole-3-acetic acid synthesis, in the biocontrol agent Serratia plymuthica A153
GEO Series GSE226107. Serratia plymuthica. 6 samples. Type: Expression profiling by high throughput sequencing.
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica
GEO Series GSE248473. Serratia plymuthica. 9 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacterial Serratia proteamaculans and Serratia plymuthica
GEO Series GSE66652. Rhizoctonia solani AG-3 Rhs1AP. 9 samples. Type: Expression profiling by high throughput sequencing.
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