Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
20
datasets available to search
ShareScore release 0.9.0
Dataset results
20 results for “Sigmodon”
Genome and annotations of cotton rat (Sigmodon hispidus)
<p>The chromosome level reference genome of <em>Sigmodon hispidus</em> based on third-generation high fidelity (HiFi) reads, high-throughput chromosome conformation capture (Hi-C), and second-generation sequencing techniques.</p>
Konza Prairie site, station Konza Prairie LTER watershed 001d, study of animal abundance of Sigmodon hispidus in units of numberPerTransectLinePer4DayTrapSeason on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Konza Prairie (KNZ) contains animal abundance of Sigmodon hispidus measurements in numberPerTransectLinePer4DayTrapSeason units and were aggregated to a yearly timescale.
Konza Prairie site, station Konza Prairie LTER watershed 004b, study of animal abundance of Sigmodon hispidus in units of numberPerTransectLinePer4DayTrapSeason on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Konza Prairie (KNZ) contains animal abundance of Sigmodon hispidus measurements in numberPerTransectLinePer4DayTrapSeason units and were aggregated to a yearly timescale.
Sevilleta site, station Cerro Montosa Study Site, study of animal abundance of Sigmodon hispidus in units of numberPerTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Sevilleta (SEV) contains animal abundance of Sigmodon hispidus measurements in numberPerTrappingWeb units and were aggregated to a yearly timescale.
Sevilleta site, station Five-Points Grass Study Site, study of animal abundance of Sigmodon hispidus in units of numberPerTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Sevilleta (SEV) contains animal abundance of Sigmodon hispidus measurements in numberPerTrappingWeb units and were aggregated to a yearly timescale.
Sevilleta site, station Five-Points Larrea Study Site, study of animal abundance of Sigmodon hispidus in units of numberPerTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Sevilleta (SEV) contains animal abundance of Sigmodon hispidus measurements in numberPerTrappingWeb units and were aggregated to a yearly timescale.
Sevilleta site, station Rio Salado Larrea Study Site, study of animal abundance of Sigmodon hispidus in units of numberPerTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Sevilleta (SEV) contains animal abundance of Sigmodon hispidus measurements in numberPerTrappingWeb units and were aggregated to a yearly timescale.
Sevilleta site, station Two-22 Study Site, study of animal abundance of Sigmodon hispidus in units of numberPerTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Sevilleta (SEV) contains animal abundance of Sigmodon hispidus measurements in numberPerTrappingWeb units and were aggregated to a yearly timescale.
Jornada Basin LTER/Jornada Experimental Range site, station Rodent trapping web in creosote vegetation zone, study of animal abundance of Sigmodon hispidus in units of numberPer3pt14HectareTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Jornada Basin LTER/Jornada Experimental Range (JRN) contains animal abundance of Sigmodon hispidus measurements in numberPer3pt14HectareTrappingWeb units and were aggregated to a yearly timescale.
Jornada Basin LTER/Jornada Experimental Range site, station Rodent trapping web in grassland vegetation zone, study of animal abundance of Sigmodon hispidus in units of numberPer3pt14HectareTrappingWeb on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Jornada Basin LTER/Jornada Experimental Range (JRN) contains animal abundance of Sigmodon hispidus measurements in numberPer3pt14HectareTrappingWeb units and were aggregated to a yearly timescale.
FIGURE 1 in A review of Gongylonema spp. (Nematoda: Gongylonematidae) in North American rodents with description of a new species from the cotton rat, Sigmodon hispidus (Mammalia: Cricetidae)
FIGURE 1. Drawings of Gongylonema archboldi n. sp. A. Male, anterior end with detail of nerve ring, muscular esophagus and beginning of glandular esophagus and cuticular bosses, internal and surface view. B. Female, anterior end with detail of nerve ring, muscular esophagus and beginning of glandular esophagus and cuticular bosses, internal and surface view in two different figures. C. Male, caudal papillae asymmetrical, pedunculate and variable in number of pre-cloacal and post-cloacal papillae and sessile papillae near tail, ventral view. D. Male, spicules dissimilar and very unequal in length, right spicule boatshaped and left spicule thin, needle-tipped. E. Male, detail of gubernaculum with a cup-shaped base in which the right spicule rests.
FIGURE 2 in A review of Gongylonema spp. (Nematoda: Gongylonematidae) in North American rodents with description of a new species from the cotton rat, Sigmodon hispidus (Mammalia: Cricetidae)
FIGURE 2. Scanning electron micrographs of Gongylonema archboldi n. sp. A. Male, anterior end with prominent cuticular bosses, ventro-lateral view. B. Female, anterior end with more numerous prominent cuticular bosses than the male, ventral view. C. Female, detail of lateral alae, lateral view. D. Female, detail of prominent cuticular bosses.
On following pages: 325. Tawny-bellied Cotton Rat (Sigmodon fulviventer); 326. Yellow-nosed Cotton Rat (Sigmodon ochrognathus); 327. Hispid Cotton Rat (Sigmodon hispidus); 328. West Mexican Cotton Rat (Sigmodon mascotensis); 329. Arizona Cotton Rat (Sigmodon arizonae); 330. Toltec Cotton Rat (Sigmodon toltecus); 331. Allen's Cotton Rat (Sigmodon alleni); 332. Burmeister's Cotton Rat (Sigmodon hirsutus); 333. Montane Cotton Rat (Sigmodon zanjonensis); 334. Miahuatlan Cotton Rat (Sigmodon planifrons); 335. Musso's Fish-eating Rat (Neusticomys mussol); 336. Montane Fish-eating Rat (Neusticomys monticolus); 337 Voss's Fish-eating Rat (Neusticomys vossi); 338. Venezuelan Fish-eating Rat (Neusticomys venezuelae); 339. Guianan Fish-eating Rat (Neusticomys oyapocki); 340. Ferreira's Fish-eating Rat (Neusticomys ferreirai); 341. Peruvian Fish-eating Rat (Neusticomys peruviensis); 342. Northern Andean Water Mouse (Chibchanomys trichotis); 343. Orces's Andean Water Mouse (Chibchanomys orcesi); 344. Earless Water Mouse (Anotomys leander); 345. Pittier's Crab-eating Rat (/chthyomys pittieri); 346. Common Crab-eating Rat (/chthyomys hydrobates); 347 Tweedy's Crab-eating Rat (/chthyomys tweed); 348. Stolzmann''s Crab-eating Rat (/chthyomys stolzmanni); 349. Goldman's Water Mouse (Rheomys raptor); 350. Thomas's Water Mouse (Rheomys thomasi); 351. Underwood's Water Mouse (Rheomys underwood); 352. Mexican Water Mouse (Rheomys mexicanus). in Cricetidae
On following pages: 325. Tawny-bellied Cotton Rat (Sigmodon fulviventer); 326. Yellow-nosed Cotton Rat (Sigmodon ochrognathus); 327. Hispid Cotton Rat (Sigmodon hispidus); 328. West Mexican Cotton Rat (Sigmodon mascotensis); 329. Arizona Cotton Rat (Sigmodon arizonae); 330. Toltec Cotton Rat (Sigmodon toltecus); 331. Allen's Cotton Rat (Sigmodon alleni); 332. Burmeister's Cotton Rat (Sigmodon hirsutus); 333. Montane Cotton Rat (Sigmodon zanjonensis); 334. Miahuatlan Cotton Rat (Sigmodon planifrons); 335. Musso's Fish-eating Rat (Neusticomys mussol); 336. Montane Fish-eating Rat (Neusticomys monticolus); 337 Voss's Fish-eating Rat (Neusticomys vossi); 338. Venezuelan Fish-eating Rat (Neusticomys venezuelae); 339. Guianan Fish-eating Rat (Neusticomys oyapocki); 340. Ferreira's Fish-eating Rat (Neusticomys ferreirai); 341. Peruvian Fish-eating Rat (Neusticomys peruviensis); 342. Northern Andean Water Mouse (Chibchanomys trichotis); 343. Orces's Andean Water Mouse (Chibchanomys orcesi); 344. Earless Water Mouse (Anotomys leander); 345. Pittier's Crab-eating Rat (/chthyomys pittieri); 346. Common Crab-eating Rat (/chthyomys hydrobates); 347 Tweedy's Crab-eating Rat (/chthyomys tweed); 348. Stolzmann''s Crab-eating Rat (/chthyomys stolzmanni); 349. Goldman's Water Mouse (Rheomys raptor); 350. Thomas's Water Mouse (Rheomys thomasi); 351. Underwood's Water Mouse (Rheomys underwood); 352. Mexican Water Mouse (Rheomys mexicanus).
Fig. 4 in Sigmodon mascotensis (Rodentia: Cricetidae)
Fig. 4.—Geographic distribution of Sigmodon mascotensis in Mexico. Modified from Carleton et al. (1999).
Fig. 2 in Sigmodon mascotensis (Rodentia: Cricetidae)
Fig. 2.—Detail of facial features of Sigmodon mascotensis from 1.5 km S and 3.0 km E of Los Asmoles, municipality of Colima, Colima, Mexico. Photograph by María de Lourdes Romero-Almaraz.
Fig. 1 in Sigmodon mascotensis (Rodentia: Cricetidae)
Fig. 1.—Adult specimen of Sigmodon mascotensis from 3.2 km E La Venta del Astillero, municipality of Zapopan, Jalisco, Mexico. Photograph by Edgar G. Godinez used with permission.
Fig. 3 in Sigmodon mascotensis (Rodentia: Cricetidae)
Fig. 3.—Dorsal, ventral, and lateral views of skull, and lateral view of mandible of adult male Sigmodon mascotensis (2940 GDS) from rancho Majagua, municipality of Manzanillo, Colima, Mexico. Greatest length of skull 37.6 mm. Photograph by Cornelio Sánchez-Hernández.
Data from: Changes in the diet and body size of a small herbivorous mammal (Sigmodon hispidus, hispid cotton rat) following the Late Pleistocene megafauna extinction
Open the record for dataset details and reuse information.
Data from: Mesocarnivores affect hispid cotton rat (Sigmodon hispidus) body mass
<p class="MsoNoSpacing"><span>Predator communities are changing worldwide: large carnivores are declining while mesocarnivores (medium-sized mammalian predators) are increasing in number and ecological influence. Predator choice of prey is not random and different predators select prey with different characteristics. Changes in predator communities can change predation patterns experienced by prey. Little is known about how mesocarnivore communities influence prey morphology. We used 14 years of mark-recapture data to investigate how mesocarnivore exclusion affected body mass of hispid cotton rats (<i>Sigmodon hispidus</i>). Finding adult male cotton rats were 9 % heavier with mesocarnivore exclusion, we developed hypotheses to explain this observation. Greater adult male body mass in exclosures resulted from: 1) a non-significant trend of increased survival of large males, 2) faster juvenile male growth during the fall and a similar non-significant trend among adult males, and 3) spatial partitioning by size among males. Taxa-specific predation rates (i.e., rates of predation by snakes, raptors, or mesocarnivores) did not differ among male body mass classes. Mesocarnivores disproportionately preyed on large females while raptors targeted small females, but female body mass was not influenced by mesocarnivore exclusion. Changes in predator communities can result in multiple small effects that collectively result in large differences in prey morphology.</span></p>
Data from: Mesocarnivores affect hispid cotton rat (Sigmodon hispidus) body mass
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.