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49 results for “Species hypotheses”
Dataset 2 for "Host-specificity and repeatability of haemosporidian infection parameters and potential consequences when testing host species-level hypotheses"
<p>Dataset with 154 host species (min 45 sampled individuals sampled at 1+ sites) for the second part of the analysis in "Host-specificity and repeatability of haemosporidian infection parameters and potential consequences when testing host species-level hypotheses". One file contains the data table. One file contains a table with descriptions of the columns in the data table.</p>
Figure 1. Phylogenetic hypotheses for the Micropsectra atrofasciata species group, only including species with sequenced COII. A in A revision of West Palaearctic species of the Micropsectra atrofasciata species group (Diptera: Chironomidae)
Figure 1. Phylogenetic hypotheses for the Micropsectra atrofasciata species group, only including species with sequenced COII. A, result from Bayesian analysis of COII gene sequences. Posterior probabilities shown above branches, bootstrap support below branches from parsimony analysis of the same data set. B, result from parsimony analysis of the combined molecular and morphological data sets. Bremer support on branches. C, result from parsimony analysis of the combined molecular and morphological data sets, with third positions excluded. Bremer support on branches.
Figure 2. Phylogenetic hypotheses for the Micropsectra atrofasciata species group. A in A revision of West Palaearctic species of the Micropsectra atrofasciata species group (Diptera: Chironomidae)
Figure 2. Phylogenetic hypotheses for the Micropsectra atrofasciata species group. A, result from parsimony analysis of the morphological character matrix, with characters weighted according to their rescaled consistency indices. B, result from parsimony analysis of the combined molecular and morphological matrices, using tree in Figure 1C as backbone constraint.
Dataset 1 for "Host-specificity and repeatability of haemosporidian infection parameters and potential consequences when testing host species-level hypotheses"
<p>Dataset with 9 host species (min. 5 study sites and min 45 sampled individuals sampled per site) for the first part of the analysis in "Host-specificity and repeatability of haemosporidian infection parameters and potential consequences when testing host species-level hypotheses". One file contains the data table. One file contains a table with descriptions of the columns in the data table.</p>
Data for: Classic hypotheses of area, time, and climatic stability fall short in explaining high tropical species richness
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Whole genome sequences of 23 species from the Drosophila montium species group (Diptera: Drosophilidae): a resource for testing evolutionary hypotheses
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Data and code from: Drivers of species richness in Amazonian amphibians and reptiles: Testing diversity hypotheses across taxonomic groups
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FIGURE 8. Molecular phylogenetic hypotheses for relationship among Bachia species including B in A new species of Bachia Gray, 1845 (Squamata: Gymnophthalmidae) from the western Brazilian Amazonia
FIGURE 8. Molecular phylogenetic hypotheses for relationship among Bachia species including B. scaea sp. nov. (highlighted in red), based (A) on the concatenate matrix, (B) on the 16S mitochondrial gene and (C) c-mos nuclear gene cmos). Values on nodes are Bayesian posterior probabilities and Maximum Likelihood bootstraps, respectively. Scale bar indicates substitution per site.
FIGURE 21 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 21. Detail of the phylogenetic hypothesis, Sabellomma, and specific hypotheses, from Fig. 20, showing optimizations of dorsal pinnular appendages. The formal definitions of these hypotheses are also presented, indicating that specific hypothesis S. minuta cannot be defined (cf. Figs 23–24 for alternative optimizations).
FIGURE 23 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 23. Detail of the phylogenetic and specific hypotheses from Fig. 22, showing optimizations of dorsal pinnular appendages. The formal definitions of these hypotheses are also presented, indicating that specific hypotheses S. collinae and S. harrisae cannot be defined (cf. Figs 21, 24 for alternative optimizations).
FIGURE 20 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 20. Strict consensus tree presented in Fig. 19, but 'inapplicable' character optimizations for distribution of simple eyes (subject 9; cf. Tables 6–7) correctly treated as inapplicable. Note that Sabellomma is monophyletic on the basis of simple eyes distributed along the entire lengths of radioles [9(1)]. Relationships among Sabellomma are determined by one of the optimizations of dorsal pinnular appendages (subject 13); compare with alternate optimization in Fig. 22.
FIGURE 19 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 19. Strict consensus tree of six minimum-length cladograms (phylogenetic analysis 2 - see text for discussion), showing relationships among apomorphic genera within Sabellinae. Note that the genus Sabellomma is paraphyletic. Character optimizations across all cladograms are indicated for the following subjects (cf. Tables 6–7): 9. distribution of simple eyes along radiole margins; 13. dorsal pinnular appendages; 21. interramal eyespots. Note the ambiguous optimizations for distribution of simple eyes, as a consequence of the use of 'inapplicable' codings.
FIGURE 16 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 16. Methyl green staining. Sabellomma minuta gen. nov., comb. nov. (spec. 16 [ZUEC-POL 7444], photographed after ~2 hours in ethanol after immersion in methyl green solution). A: total worm, ventral view; B: total worm, dorsal view; C–D: anterior end, ventral views; E: posterior end, ventral view; F: posterior end, dorsal view. Sabellomma collinae gen. nov., sp. nov. (holotype [LACM-AHF 2404], photographed after ~2.5 hours in ethanol after immersion in methyl green solution). G: total worm, right lateral view; H: anterior end, dorsal view; I–J: anterior end, ventral views; K: posterior end, right lateral view. Scale bars: A–B, G = 1 mm; C, I = 0.7 mm; D–F, K = 0.3 mm; H, J = 0.4 mm.
FIGURE 14 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 14. Sabellomma harrisae gen. nov., sp. nov. A: parapodia from segments 1–2; B: collar chaetae; C: notochaetae from segment 4; D–F: inferior thoracic notochaetae (paleae) from segments 3, 4 and 4, respectively; G, J: posterior abdominal neurochaetae; H–I: mid-abdominal neurochaetae. All photos from paratype 6 (LACM-AHF 2419). Scale bars: A = 40 µm; B, G–H, J = 20 µm; C = 25 µm; D = 15 µm; E = 5 µm; F = 7 µm; I = 8 µm.
FIGURE 18 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 18. Strict consensus tree of 16 minimum-length cladograms (phylogenetic analysis 1 - see text for discussion), showing relationships among Sabellinae. Note that the genus Sabellomma is paraphyletic.
FIGURE 15 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 15. Sabellomma harrisae gen. nov., sp. nov. A: neurochaetae from segment 4; B: uncini from segment 3; C: companion chaetae from segment 3; D–E: uncini from segment 6; F, J: anterior abdominal uncini; G–I: posterior abdominal uncini. All photos from paratype 6 (LACM-AHF 2419). Scale bars: A = 15 µm; B = 8 µm; C = 3 µm; D, G, J = 4 µm; E, I = 5 µm; F, H = 2 µm.
FIGURE 10 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 10. Sabellomma collinae gen. nov., sp. nov. A: notochaetae from segment 4; B: inferior thoracic notochaetae (paleae) from segment 2; C–D: mid-abdominal neurochaetae; E: neurochaetae from segment 3; F: mid-abdominal uncini; G: neurochaetae from segment 2; H: uncini from segment 3; I–K: companion chaetae from segments 4, 3 and 2, respectively. All photos from paratype 6 (LACM-AHF 2410). Scale bars: A = 30 µm; B = 10 µm; C–D = 12 µm; E = 20 µm; F = 5 µm; G–H = 8 µm; I, K = 4 µm; J = 2 µm.
FIGURE 11 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 11. Sabellomma harrisae gen. nov., sp. nov. A–B: live specimens; C: total worm, dorsal view; D: total worm, ventral view; E: total worm, right lateral view; F: anterior end, right lateral view; G: detail of anterior end, right lateral view; H: anterior end, dorsal view; I: anterior end, ventral view; J: posterior end, left ventro-lateral view. Photos A–B from paratype 11 (LACM-AHF POLY 2424; no track for other specs in photo B), courtesy L. Harris; photos C–J from holotype (LACM-AHF 2413). Scale bars: C–E = 0.5 mm; F = 0.4 mm; G, J = 0.2 mm; H–I = 0.3 mm.
FIGURE 9 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 9. Sabellomma collinae gen. nov., sp. nov. A: collar chaetae; B: notochaetae from segment 4; C: neurochaetae from segment 13; D: notochaeta from anterior row from segment 13; E: notochaeta from posterior row from segment 13; F: neurochaetae from segment 4; G–H: uncini from segment 15. All photos from paratype 6 (LACM-AHF 2410). Scale bars: A–B, D = 30 µm; C, E = 25 µm; F = 20 µm; G–H = 10 µm.
FIGURE 12 in A new genus and new species of fan worms (Polychaeta: Sabellidae) from Atlantic and Pacific Oceans—the formal treatment of taxon names as explanatory hypotheses
FIGURE 12. Sabellomma harrisae gen. nov., sp. nov. A: anterior end, right lateral view; B: anterior end, left lateral view; C: dissected half crown and lips; D: anterior end, dorsal view; E: anterior end, ventral view; F: anterior end, left lateral view; G: anterior end, right lateral view; H–I: details of collar and base of crown, right ventro-lateral and dorsal views, respectively; J: dorsal lip (dissected crown); unspecified arrow points to connection between dorsal lip and dorsal pinnular appendage. br = branchial ridge; dl = dorsal lip; pa = pinnular appendage; pl = parallel lamellae; ra = radiolar appendage; vs = ventral sacs. Photos A–B, D–I from paratype 6 (LACM-AHF 2419); photos C and J from paratype 12 (LACM-AHF 2425). Scale bars: A, C = 0.3 mm; B = 0.4 mm; D, F–G = 0.1 mm; E, I = 75 µm; H, J = 50 µm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.