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2 results for “Standard Vaporization Enthalpy”
ΔvapHm-VOC: Standard Molar Vaporization Enthalpy Database for Machine Learning Prediction Models
<p>We present the full database of the article "Data-Driven, Explainable Machine Learning Model for Predicting Volatile Organic Compounds’ Standard Vaporization Enthalpy".</p> <p>This is the database used for data driven, explainable supervised ML model to predict Δ<sub>vap</sub><em>H</em><sub>m</sub>° of VOCs. The model was built on an established experimental database of 2410 unique molecules and 223 VOCs categorized by chemical groups. Using supervised ML regression algorithms, the Random Forest successfully predicted VOCs’ Δ<sub>vap</sub><em>H</em><sub>m</sub>° with a mean absolute error of 3.02 kJ mol<sup>-1</sup> and a 94% test score. The model was successfully validated through the prediction of Δ<sub>vap</sub><em>H</em><sub>m</sub>° for a known database of VOCs and through molecular group hold-out tests.</p> <div> <div> <div> <div> <p>The model's database was built with a variety of molecules from diverse chemical families with known experimental Δ<sub>vap</sub><em>H</em><sub>m</sub>° values. Entries were collected from <a href="https://doi.org/10.1063/1.3309507" target="_blank" rel="noopener">Acree and Chickos’ 2010 compilation</a>, curated by <a href="https://doi.org/10.1016/j.fluid.2013.09.021" target="_blank" rel="noopener">Gharagheizi (2013)</a>, with experimental vaporization enthalpy at the standard temperature of 298.15 K. This database was selected as it is an open-access repository, generally presenting experimental values with low uncertainties and corrected for the real-to-ideal behavior of the gas phase. We introduced a routine to convert and present each chemical entry into a SMILES string, along with chemical family categorization. For VOCs, we built a specific database of compounds documented in a VOC regulatory environmental guideline (<a href="https://www.s-t-a.org/Files%20Public%20Area/Documents/The%20Categorisation%20of%20Volatile%20Organic%20Compounds%20HMIP%20(1996).pdf">Marlowe <em>et al</em>., 1995</a>), and we used our web-scrapping routine to gather experimental Δ<sub>vap</sub><em>H</em><sub>m</sub>° values. The external dataset for validation studies was also collected from <a href="https://doi.org/10.1016/j.fluid.2013.09.021" target="_blank" rel="noopener">Gharagheizi (2013)</a>.</p> <p>Along with Δ<sub>vap</sub><em>H</em><sub>m</sub>° experimental values, each molecule is represented by its CAS number, SMILES string and InChlKey. We generated 106 chemical descriptors for every molecule in the database, using <a href="http://http//www.rdkit.org/">RDKit</a> software version 2022.09.4, running on top of Python 3.9. Descriptors were calculated from the “MolFromSmiles” function in “RDKIT.Chem” as descriptors with non-numerical values were removed. The descriptors encode significant chemical information and are used to present physicochemical characteristics of compounds, building a relationship between structure and Δ<sub>vap</sub><em>H</em><sub>m</sub>°.</p> </div> </div> </div> </div> <p>Through chemical feature importance analysis, the explainable model revealed that VOC polarizability, connectivity indexes and electrotopological state are key for the model’s prediction accuracy. We thus present a replicable and explainable model, which can be further expanded towards the prediction of other thermodynamic properties of VOCs.</p>
ΔvapHm-RDKit: Standard Vaporization Enthalpy Database
<p>We present a database to Predict Standard Vaporization Enthalpies through Intelligible Features.</p><p>This database presents a variety of molecules of diverse chemical families with known experimental Standard Vaporization Enthalpy (Δvap<i>H</i>m°) values. Entries were collected from the <a href="https://webbook.nist.gov/chemistry/">NIST WebBook Library</a> through a web scraping routine, considering only Δvap<i>H</i>m° experimental values, ranging from 15 kJ mol-1 to 400 kJ mol-1. Experimental value scrapping was automatically made, without duplicates, by selecting the first listed value (either a from single or average of values as determined by NIST). The database includes each value's original literature, along with experimental uncertainties (when available). </p><p>Each compound is represented by its molecular family, SMILES string and respective InChlKey & InChl identifiers. The curated database consists of 1781 molecules over 15 different chemical families. The chemical descriptors used to feed our model were generated using <a href="http://www.rdkit.org/">RDKit</a> version 2022.09.4, running on top of Python 3.9. Descriptors were calculated from the "MolFromSmiles" function in "RDKIT.Chem" as descriptors with non-numerical values were removed. The descriptors encode significant chemical information and are used to present physicochemical characteristics of compounds, building a relationship between structure and Δvap<i>H</i>m° determinations.</p><p>Through Machine Learning regression algorithms, we have developed models that were able to make accurate Δvap<i>H</i>m° predictions, based on the information encoded in each chemical feature. Our models can be accessed through <a href="https://github.com/jfcaetano/EnthVapML">GitHub</a>.</p>
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