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Data from: Absence of genetic isolation across highly fragmented landscape in the ant Temnothorax nigriceps
<p><strong>This README accompanies data_genotyping.txt</strong></p> <p> </p> <p><strong><em>Associate publication : </em></strong></p> <p>Absence of genetic isolation across highly fragmented landscape in the ant Temnothorax nigriceps</p> <p>M. Cordonnier<sup>a</sup>, D. Felten<sup>a</sup>, A. Trindl<sup>a</sup>, J. Heinze<sup>a</sup>*, A. Bernadou<sup>a</sup>*</p> <p><sup>a</sup>Lehrstuhl für Zoologie / Evolutionsbiologie, Univ. Regensburg</p> <p>*Equal contribution</p> <p> </p> <p>****************************** CONTENTS *******************************</p> <p>The data can be readily imported in any statistical package or spreadsheet program. Please, contact me if you need the file formatted in other ways.</p> <p> </p> <p>This file includes a description of the variables.</p> <p>***********************************************************************</p> <p>Variable names and descriptions</p> <p> </p> <p><strong>Sample:</strong> ID of the sampled nest</p> <p><strong>Location:</strong> Population of the sampled nest</p> <p> </p> <p><strong>List of genotypes </strong></p> <p>Microsatellite primers used in the study</p> <table> <tbody> <tr> <td> </td> <td> <p>Annealing temperature [°C]</p> </td> <td> <p>Orientation</p> </td> <td> <p>Sequence of primers</p> </td> </tr> <tr> <td> <p>LX GT218</p> </td> <td> <p>57</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-GTTCTTGCGCGGATGCATAC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-TGTACTCGCGTGTCTATCGG-3’</p> </td> </tr> <tr> <td> <p>Ant3993</p> </td> <td> <p>57</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-TGATCCGCTCTTAAAATTTAGATGGA-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-ACTTTCCGCRGCATTAAACATTTTCTT-3’</p> </td> </tr> <tr> <td> <p>L-18</p> </td> <td> <p>57</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-TGAATTTGGATGGCGGTAGAC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-ACCTAATGCACGCTTTAGAAT-3’</p> </td> </tr> <tr> <td> <p>LXA GT1</p> </td> <td> <p>57</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-GTGGCGACCAATTCTGCAAG-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-GCAGGACCAGCATCAAATGACAG-3’</p> </td> </tr> <tr> <td> <p>2MS17</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-CAGCCTCTATTTTGTTCGAAG-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-TTTACTGCGGCTCCATAATC-3’</p> </td> </tr> <tr> <td> <p>2MS46</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-GCTCACTACTATGCTGCCAGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-CTTTCCTGCAAACCACGTGT-3’</p> </td> </tr> <tr> <td> <p>2MS60</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-TATGCGCCGGACAATAATCGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-GTTCATTGTCCGAGGCGCAGC-3’</p> </td> </tr> <tr> <td> <p>2MS67</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-GAAGATTCGTCAGGATGCAGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-AACTCTCGCTGGCAAGCGAGC-3’</p> </td> </tr> <tr> <td> <p>2MS82</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-AAAAGAGCATGCAACAGGTCAGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-TTTCTTAAGTCGCAAGCGAGC-3’</p> </td> </tr> <tr> <td> <p>2MS87</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-GGAACCTCACTCAACCTCGGT-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-ACGCGGACTACTTTAACCGGA-3’</p> </td> </tr> <tr> <td> <p>2MS91</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-AAAGTCTCGGAGTGGCTTTGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-ATTCTCGTCCATTTGTTCTAA-3’</p> </td> </tr> <tr> <td> <p>Ant11893</p> </td> <td> <p>55</p> </td> <td> <p>Forward</p> </td> <td> <p>5’-CAGGCTCGGRACGTTAATGC-3’</p> </td> </tr> <tr> <td> <p>Reverse</p> </td> <td> <p>5’-GGTGCCGACGTCTAGCTAGC-3’</p> </td> </tr> </tbody> </table> <p> </p> <p>Missing data are encoded “-9”.</p> <p> </p> <p>****************************** CONTACTING *****************************</p> <p>Contact me at:</p> <p> </p> <p>Marion Cordonnier</p> <p>e-mail: marion.cordonnier@hotmail.com</p> <p> </p> <p>***********************************************************************</p> <p> </p>
Temnothorax rugatulus ants do not change their nest walls in response to environmental humidity
<p><strong>Overview</strong></p> <p>Data used for manuscript: <em>Temnothorax rugatulus</em> ants do not change their nest walls in response to environmental humidity</p> <p> </p> <p><strong>Structure of the data</strong></p> <p>SupplementalHygrometerDatabase.csv</p> <p>Raw hygrometer data that is used to calculate the average environmental humidity and temperature for each Trial:Salt combination</p> <ul> <li>Colony: Unique experimental colony identifiers</li> <li>TrialNumber: Sequential trial number (1-4) that is NOT unique for each colony - see "Trial"</li> <li>Salt: Saturated salt solution used</li> <li>"Date Time, GMT-07:00": Date and time of each observation</li> <li>Temp: Temperature in celcius</li> <li>RH: Relative humidity (%)</li> <li>Trial: The trial number for each individual colony, each colony underwent two trials</li> </ul> <p>HumidityExperimentalDatabase.csv</p> <p>Raw experimental data with nest features and colony size</p> <ul> <li>Colony: Unique experimental colony identifiers</li> <li>Trial: The trial number for each individual colony, each colony underwent two trials</li> <li>TrialNumber: Sequential trial number (1-4) that is NOT unique for each colony - see "Trial"</li> <li>Day: The day in the experimental timeline (always 10, but days 1 and 5 were captured and not considered)</li> <li>Area: Area of the built nest wall (mm<sup>2</sup>)</li> <li>Length: Length of the built nest wall (mm)</li> <li>Nest.Area: Area of the internal nest space (mm<sup>2</sup>)</li> <li>HumLevel: Whether the colony started with a higher or lower relative humidity (High/Low)</li> <li>Number.Ant: The number of workers in the colony</li> <li>Number.Brood: The number of brood in the colony</li> <li>Number.Queens: The number of brood in the colony</li> <li>Salt: Saturated salt solution used</li> <li>SubstrateISide: Substrate I placement in the container from the perspective of looking out from the nest entrance</li> <li>StartWtI: The initial weight (g) of the available substrate I building nest wall material</li> <li>UsedWtI: The weight (g) of the available substrate I building nest wall material following the experimental building phase</li> <li>StartWtII: The initial weight (g) of the available substrate II building nest wall material</li> <li>UsedWtII: The weight (g) of the available substrate II building nest wall material following the experimental building phase</li> <li>CollWallWt: The weight (g) of the experimental nest wall that each colony built</li> </ul> <p>HumidMortalityRaw.csv</p> <p>Raw experimental data with proportion of workers and brood dead after each colony underwent Trial 1</p> <ul> <li>Colony: Unique experimental colony identifiers</li> <li>WorkerDeath: Proportion of workers that died</li> <li>BroodDeath: Proportion of brood that died</li> <li>TrialNumber: Sequential trial number (1-4) that is NOT unique for each colony</li> </ul> <p>PorosityComparisonRaw.csv</p> <p>Data used for comparing the porosities of each experimental substrate, experimentally built walls, and collected <em>Temnothorax rugatulus</em> walls</p> <p>Porosity is the percentage of void space in compact substrate - PoreVolume/TotalVolume</p> <ul> <li>SubstrateID: A unique identifier for each substrate replicate</li> <li>Trial: The trial number for each individual colony, each colony underwent two trials (only applicable for experimentally built walls)</li> <li>SubCategory: The type of substrate (Sub I, Sub II, Built, Natural)</li> <li>TotalVolume: The combined pore (void space in compact substrate grains) and soil volume (ml) of a substrate</li> <li>PoreVolume: The void space in between compact substrate grains (ml)</li> </ul>
Figs 10–12 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 10–12. Temnothorax megalops (Hamann & Klemm, 1967), holotype, worker (CASENT0712601). 10. Body in profile.11. Body in dorsal view. 12. Head in frontal view.
Figs 1–3 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 1–3. Temnothorax arabicus Sharaf & Akbar sp. nov., holotype, worker (CASENT0746640) 1. Body in profile. 2. Body in dorsal view. 3. Head in frontal view.
Figs 7–9 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 7–9. Temnothorax liviae (Agosti & Collingwood, 2011) comb. nov., queen (CASENT0102699). 7. Body in profile. 8. Body in dorsal view. 9. Head in frontal view.
Figs 4–6 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 4–6. Temnothorax liviae (Agosti & Collingwood, 2011) comb. nov., holotype, worker (CASENT0102700). 4. Body in profile. 5. Body in dorsal view. 6. Head in frontal view.
Figs 16–18 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 16–18. Tetramorium saudiae (Collingwood & Agosti, 1996), holotype, worker (CASENT0922184). 16. Body in profile.17. Body in dorsal view. 18. Head in frontal view.
Figs 13–15 in Taxonomy of the Myrmicine ant genus Temnothorax Mayr, 1861 (Formicidae: Myrmicinae) in the Arabian Peninsula
Figs 13–15. Temnothorax megalops (Hamann & Klemm, 1967), queen (CASENT0712600). 13. Body in profile. 14. Body in dorsal view. 15. Head in frontal view.
Foraging behavior of tagged rock ants (Temnothorax rugatulus)
<p><span>Technological advances continue to push the boundaries of scientific inquiry in animal behavior. One such development is the emergence of automated tracking systems, which enable the collection of high-resolution spatio-temporal information for animals. Although tag-based tracking systems provide valuable insights into animal movement and collective behavior, the attachment of devices can have detrimental effects in some cases. Here, we investigated the effects of recently developed miniature tracking tags using the rock ant, </span><em><span>Temnothorax rugatulus</span></em><span>, as a model system. To do so, we compared the foraging activities of tagged ants and untagged ants (who lost their tags) within initially fully-tagged colonies. Additionally, we compared the foraging activities of these initially fully-tagged colonies with those of no-tag control colonies (no one was tagged). We found that tags did not significantly reduce individual activity, with tagged ants visiting the food source as frequently as untagged ants within initially fully-tagged colonies. However, our analysis revealed a marked difference in recruitment behavior—tagged ants were less likely to participate in tandem runs than untagged ants. Furthermore, the number of tandem runs was higher for the no-tag control colonies than the initially fully-tagged colonies, in which 69–95% of colony members had tags. Our data suggest, for the first time, that tracking tags can negatively impact ant behavior. Although tracking devices are powerful tools for understanding complex behavioral patterns, it is crucial to carefully consider their potential impact on animal behavior to ensure accurate conclusions.</span></p>
Fig. 2 in Three new species of the ant genus Temnothorax Mayr, 1861 (Hymenoptera: Formicidae, Myrmicinae) from Nepal
Fig. 2. Temnothorax buddha sp. n., queen, paratype. A – habitus, profile view; B – head, full-face view; C – habitus, dorsal view.
Fig. 1 in Three new species of the ant genus Temnothorax Mayr, 1861 (Hymenoptera: Formicidae, Myrmicinae) from Nepal
Fig. 1. Temnothorax buddha sp. n., worker, holotype. A – habitus, profile view; B – head, full-face view; C – habitus, dorsal view.
Figs 6–10. Temnothorax species. 6 in Three New Species Of Genus Temnothorax (Hymenoptera: Formicidae) From Indian Himalayas With A Revised Key To The Indian Species
Figs 6–10. Temnothorax species. 6 = T. kashmirensis sp. n., worker, body, dorsal view; 7–9 = T. kashmirensis sp. n., queen: 7 = head, full face view, 8 = body, lateral view, 9 = body, dorsal view; 10 = T. microreticulatus sp. n., worker, head, full face view
Figs 1–5. Temnothorax workers. 1–3 in Three New Species Of Genus Temnothorax (Hymenoptera: Formicidae) From Indian Himalayas With A Revised Key To The Indian Species
Figs 1–5. Temnothorax workers. 1–3 = T. himachalensis sp. n.: 1 = head, full face view, 2 = body, lateral view, 3 = body, dorsal view; 4–5 = T. kashmirensis sp. n.: 4 = head, full face view, 5 = body, lat-
Figs 11–15. Temnothorax species. 11–12 in Three New Species Of Genus Temnothorax (Hymenoptera: Formicidae) From Indian Himalayas With A Revised Key To The Indian Species
Figs 11–15. Temnothorax species. 11–12 = T. microreticulatus sp. n., worker: 11 = body, lateral view, 12 = body, dorsal view. 13–15 = T. microreticulatus sp. n., queen: 13 = head, full face view, 14 = body,
Figs 80–81 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Figs 80–81. Geographic distribution of the four taxa treated in this study. Note that the shallow water area (light grey) between Sicily and the Maltese Islands roughly corresponded to a land bridge during glaciations.
Figs 64–74 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Figs 64–74. Specimens of Temnothorax vivianoi Schifani, Alicata & Prebus sp. nov. in lateral (left), dorsal (center) and head view (right). Photos by Enrico Schifani, available onwww.antweb.org, specimen identifiers in parentheses. 64–66. Holotype worker from Monte Pellegrino (Palermo Mountains, Sicily) (ANTWEB1041551). 67–69. Paratype worker from Monte Pellegrino (Palermo Mountains, Sicily) (ANTWEB1041552). 70–72. Paratype queen from Monte Pellegrino (Palermo Mountains, Sicily) (ANTWEB1041553). 73–74. Damaged male from Palermo Mountains (Sicily) (ANTWEB1041554). Scale bars = 0.5 mm.
Figs 75–78 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Figs 75–78. Morphometric differentiation of the four taxa treated in this study based on the worker caste. 75. Principal component analysis of all nine morphometric characters (excluding indices). 76. Scatter plot of eye size index (EYE/CS) against cephalic length index (CL/CW). 77. Scatter plot of absolute spines length (SPST) against cephalic size (CS). 78. Scatter plot of spine length index (SPST/ CL) against scape length index (SL/CS).
Fig. 79. Maximum likelihood phylogeny inferred with IQTREE ver. 2.1.2 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Fig. 79. Maximum likelihood phylogeny inferred with IQTREE ver. 2.1.2. The major clades found in Prebus (2017) are highlighted, and the focal species of the current study (all within the 'Palearctic clade IV') are evidenced as in Figs 75–78. Maximum likelihood bootstrap support for all nodes are 100, except where indicated.
Figs 46–63 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Figs 46–63. Specimens of Temnothorax poldii Alicata, Schifani & Prebus sp. nov. in lateral (left), dorsal (center) and head view (right). Photos by Enrico Schifani, available on www.antweb.org, specimen identifiers in parentheses. 46–48. Holotype worker from Monte Arso (Etna, Sicily) (ANTWEB1041545). 49–51. Worker from Vallone Madonne degli Angeli (Madonie, Sicily) (ANTWEB1041546). 52– 54. Paratype worker from Monte Ruvolo (Etna, Sicily) (ANTWEB1041547). 55–57. Worker from Monte Manfrè (Etna, Sicily) (ANTWEB1041548), with ergatogynes characters in the mesosoma. 58– 60. Paratype queen from Monte Arso (Etna, Sicily) (ANTWEB1041549). 61–63. Paratype male from Monte Ruvolo (Etna, Sicily) (ANTWEB1041550). Scale bars = 0.5 mm.
Figs 34–45 in Integrating morphology with phylogenomics to describe four island endemic species of Temnothorax from Sicily and Malta (Hymenoptera, Formicidae)
Figs 34–45. Specimens of Temnothorax marae Alicata, Schifani & Prebus sp. nov. in lateral (left), dorsal (center) and head view (right). Photos by Enrico Schifani, available on www.antweb.org, specimen identifiers in parentheses. 34–36. Holotype worker from Vendicari (Hyblaean Sicily) (ANTWEB1041541). 37–39. Paratype worker from Vendicari (Hyblaean Sicily) (ANTWEB1041542). 40–42. Queen from Bosco di Santo Pietro (Hyblaean Sicily) (ANTWEB1041543), note that the lateral image was edited to compensate for the fact that the petiole and gaster plus postpetiole were accidentally disarticulated. 43–45. Male from Bosco di Santo Pietro (Hyblaean Sicily) (ANTWEB1041544). Scale bars = 0.5 mm.
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