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3 results for “Three-dimensional microscopy”
Experimental data for: "Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of field limits"
<p>This is the raw experimental data for the paper: "Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of field limits"</p> <p>Now also including code to recreate figures, and data from alignment and multi-slice ptychography reconstructions.</p> <p>The data is in zarr format and can be read with the zarr python library. It also contains metadata in a dictionary. </p>
Data from: Open-top Bessel beam two-photon light sheet microscopy for three-dimensional pathology
Open the record for dataset details and reuse information.
Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy"
<p>Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy".</p> <p>In the compressed folder, there is :</p> <ul> <li>The raw data recorded by the camera during the tomographic polarimetric measurements (yellow_bone_ID_001_202418_1156.h5),</li> <li>The raw data were the shifts inside each projection, that occurs sometime between polarisation states, has been corrected manually (yellow_bone_ID_001_202418_1156_pre_processing_v2.h5)</li> <li>The binned, cropped and aligned data (yellow_bone_ID_001_20231218_1039_alignment_v2_2.mat)</li> <li>The 3D reconstruction of the index elipsoid at each voxel of the synthetic object (bir TT result 1.48200 & 1.4835 - scale[4, 0.000001] - coef [0.01,500] - reg weights 0.375&0.0025 - itr250.mat)</li> <li>The synthetic projections linked to this synthetic object (projections + reg weights 0.375&0.0025 + coef_tv [1.e-02 5.e+02] + itr250.mat)</li> </ul> <p>The reconstruction code will be published as part of our open-source software package MUMOTT including tutorials on our webpage (<a href="http://mumott.org/" target="_blank" rel="noopener noreferrer">mumott.org</a>), the data will be published over zenodo with the publication of the research paper. At the point of submission the code is available upon request<br><br>See linked publication for the full description of the dataset.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.