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ShareScore release 0.9.0
Dataset results
16 results for “Topologically Associated Domains”
TReNCo: Topologically associating domain (TAD) aware regulatory network construction (extended data)
<p>The enclosed files contain all of the extended data from: TReNCo: Topologically associating domain (TAD) aware regulatory network construction</p>
Comprehensive dissection of cis-regulatory elements in a 2.8 Mb topologically associated domain in six human cancers
GEO Series GSE278245. Homo sapiens. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program
GEO Series GSE66579. Mus musculus. 109 samples. Type: Other.
Identification of topologically associated domains (TADs) in peripheral blood CD34+ cells
GEO Series GSE188940. Homo sapiens. 2 samples. Type: Other.
Escape from X chromosome inactivation occurs within topologically associated domains
GEO Series GSE49111. Mus musculus. 2 samples. Type: Other.
Genomic profiling of HIV-1 integration in microglia cells links viral integration to the topologically associated domains
GEO Series GSE223638. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Regulated Capture of Vk Gene Topologically Associating Domains by Transcription Factories
GEO Series GSE84705. Mus musculus. 75 samples. Type: Expression profiling by high throughput sequencing.
Topologically associating domains (TADs) are insufficient for the transcription of β-globin gene and sub-TADs are required for this process
GEO Series GSE269934. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
GEO Series GSE66900. Danio rerio; Strongylocentrotus purpuratus; Mus musculus. 63 samples. Type: Other.
Topologically Associating Domain Boundaries are Required for Normal Genome Function
GEO Series GSE172089. Mus musculus. 89 samples. Type: Expression profiling by high throughput sequencing; Other.
Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation
GEO Series GSE139810. Homo sapiens. 69 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
KSHV Topologically Associating Domains in Latent Chromatin and Regulation of Reactivation
GEO Series GSE163696. Homo sapiens; Human gammaherpesvirus 8. 10 samples. Type: Other.
Glucocorticoid stimulation induces regionalized gene responses within topologically associating domains
GEO Series GSE226487. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL and PDS5 proteins
GEO Series GSE102884. Homo sapiens. 30 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Transcriptomisc Reveals Myometrial Topologically Associated Domains linked to the Onset of Human Term Labor
GEO Series GSE186763. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes’ chromatin [Hi-C]
GEO Series GSE96037. Gallus gallus. 6 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.