Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

138

datasets available to search

ShareScore release 0.7.1

Reset

Dataset results

138 results for “Transport modeling”

Learn how ShareScore rates datasets ↗
zenodo52/100

QuaLiKiz-v2.6.2 turbulent transport model evaluations based on JET experimental plasma profiles

<p>This dataset was used to train the QuaLiKiz-neural-network (QLKNN) model, QLKNN-jetexp-15D, described within the following published article: <a href="https://doi.org/10.1063/5.0038290">https://doi.org/10.1063/5.0038290</a>. It was generated with approximately 33 million standalone evaluations of QuaLiKiz-v2.6.2, each performed with a standard vector of 18 wavenumbers. Only approximately 21 million of these are kept for training due to various consistency checks applied to the code outputs. More information about the QuaLiKiz code can be found at <a href="https://www.qualikiz.com">www.qualikiz.com</a>.</p> <p>The data is saved under 3 keys in HDF5 format: &quot;/input&quot;, &quot;/output&quot;, and &quot;/label&quot;. The inputs to the QuaLiKiz evaluations are provided under &quot;/input&quot;, representing the local plasma parameters extracted from experimental measurements from the JET plasma device in Culham, UK, along with variations of select parameters according to propagated experimental uncertainties. Selected relevant outputs of the QuaLiKiz evaluations are provided under &quot;/output&quot;, namely the local turbulent transport coefficients after applying a semi-empirical turbulent fluctuation saturation rule. Some useful metadata is provided under &quot;/label&quot;, giving some degree of provenance tracking back to the JET experimental database, as well as describing the applied parameter variations and explaining why certain output rows were removed from the output structure.</p>

opencc-by-4.0Mar 2021View details →
edi52/100

Larval transport pathways from three prominent sand lance habitats in the Gulf of Maine: otolith data, model data, and post-processed model data products

This dataset includes hatch and larval period for sand lance collected in 2019 and results from particle tracking runs of simulated sand lance larvae throughout the Northeast U.S. Shelf as part of Long-Term Ecological Research (NES-LTER). Release dates vary by region, corresponding to hatch and settlement dates of settling sand lance collected in 2019. Particles were depth-keeping throughout the upper 40 m to best replicate our understanding of the vertical distribution of sand lance larvae. Data were used to determine the average particle transport pathways from these sand lance habitats, including connectivity among the three hotspots, and spatial variability of connectivity within each hotspot. Further information can be found within the manuscript: Suca, J. J., Ji, R., Baumann, H., Pham, K., Silva, T. L., Wiley, D. N., Feng, Z., & Llopiz, J. K. (2022). Larval transport pathways from three prominent sand lance habitats in the Gulf of Maine. Fisheries Oceanography, 31( 3), 333-352. https://doi.org/10.1111/fog.12580

openCC (other)Jun 2022View details →
zenodo48/100

Model simulation data used in "The global impact of the transport sectors on atmospheric aerosol in 2030 – Part 2: Aviation" (Righi et al., Atmos. Chem. Phys., 2016)

<p>This dataset contains the output of the EMAC global model simulations analysed and discussed in Righi et al. (<i>Atmos. Chem. Phys.</i>, 2016). For details see the README.md file.</p>

opencc-zeroOct 2023View details →
zenodo48/100

Model simulation data used in "The global impact of the transport sectors on atmospheric aerosol in 2030 – Part 1: Land transport and shipping" (Righi et al., Atmos. Chem. Phys., 2015)

<p>This dataset contains the output of the EMAC global model simulations analysed and discussed in Righi et al. (<i>Atmos. Chem. Phys.</i>, 2015). For details see the README.md file.</p>

opencc-zeroOct 2023View details →
zenodo48/100

Data for paper publication "Modelling emission and transport of key components of primary marine organic aerosol using the global aerosol-climate model ECHAM6.3–HAM2.3"

<p>The dataset presented here is related to the article by Leon-Marcos et al. 2025: "Modelling emission and transport of key components of primary marine organic aerosol using the global aerosol-climate model ECHAM6.3&ndash;HAM2.3" accepted for publication in GMD. It comprises global fields of the FESOM2.1-REcoM3 biogeochemistry model tracers employed to calculate the ocean biomolecule concentration that serve as input data for the aerosol model. Additionally, the ECHAM6.3&ndash;HAM2.3 code of the marine aerosol implementation and the required scripts to run the model experiments are provided here. The aerosol-climate model simulation results of the marine aerosol emission, as well as the evaluation of the model results compared to observations, are also included. For further information, please refer to the attached data description.&nbsp;</p> <p>&nbsp;</p> <h2>&nbsp;</h2>

opencc-by-4.0Sep 2024View details →
zenodo48/100

Integrated Agent-based Modelling and Simulation of Transportation Demand and Mobility Patterns in Sweden

<h2>About</h2> <p><span>The Synthetic Sweden Mobility (SySMo) model provides a simplified yet statistically realistic microscopic representation of the real population of Sweden. The agents in this synthetic population contain socioeconomic attributes, household characteristics, and corresponding activity plans for an average weekday. This agent-based modelling approach derives the transportation demand from the agents&rsquo; planned activities using various transport modes (e.g., car, public transport, bike, and walking).</span></p> <div> <p>This open data repository contains four datasets:&nbsp;</p> <p>(1)&nbsp;Synthetic Agents,&nbsp;</p> </div> <div> <p>(2)&nbsp;Activity Plans of the Agents,&nbsp;&nbsp;</p> </div> <div> <p>(3) Travel Trajectories of the Agents, and&nbsp;&nbsp;</p> </div> <div> <p>(4) Road Network (EPSG: 3006)</p> <p><span>(OpenStreetMap data were retrieved on August 28, 2023, from https://download.geofabrik.de/europe.html, and GTFS data were retrieved on September 6, 2023 from https://samtrafiken.se/)</span></p> <p><span>The database can serve as input to assess the potential impacts of new transportation technologies, infrastructure changes, and policy interventions on the mobility patterns of the Swedish population.</span></p> </div> <h2>Methodology</h2> <p>This dataset contains statistically simulated 10.2 million agents representing the population of Sweden, their socio-economic characteristics and the activity plan for an average weekday. For preparing data for the MATSim simulation, we randomly divided all the agents into 10 batches. Each batch's agents are then simulated in MATSim using the multi-modal network combining road networks and public transit data in Sweden using the package pt2matsim (https://github.com/matsim-org/pt2matsim).&nbsp;&nbsp;</p> <p>The agents' daily activity plans along with the road network serve as the primary inputs in the MATSim environment which ensures iterative replanning while aiming for a convergence on optimal activity plans for all the agents. Subsequently, the individual mobility trajectories of the agents from the MATSim simulation are retrieved.</p> <p>The activity plans of the individual agents extracted from the MATSim simulation output data are then further processed. All agents with negative utility score and negative activity time corresponding to at least one activity are filtered out as the &lsquo;infeasible&rsquo; agents. The dataset &lsquo;<strong>Synthetic Agents</strong>&rsquo; contains all synthetic agents regardless of their <span>&lsquo;<em>feasibility</em>&rsquo; (0=excluded &amp; 1=included in plans and trajectories). In the other datasets, only agents with feasible activity plans are included. </span></p> <p>The simulation setup adheres to the MATSim 13.0 benchmark scenario, with slight adjustments. The strategy for replanning integrates BestScore (60%), TimeAllocationMutator (30%), and ReRoute (10%)&mdash; the percentages denote the proportion of agents utilizing these strategies. In each iteration of the simulation, the agents adopt these strategies to adjust their activity plans. The "BestScore" strategy retains the plan with the highest score from the previous iteration, selecting the most successful strategy an agent has employed up until that point. The "TimeAllocationMutator" modifies the end times of activities by introducing random shifts within a specified range, allowing for the exploration of different schedules. The "ReRoute" strategy enables agents to alter their current routes, potentially optimizing travel based on updated information or preferences. These strategies are detailed further in W. Axhausen et al. (2016) work, which provides comprehensive insights into their implementation and impact within the context of transport simulation modeling.&nbsp;</p> <h2>Data Description</h2> <h3>(1) Synthetic Agents</h3> <p>This dataset contains all agents in Sweden and their socioeconomic characteristics.&nbsp;&nbsp;</p> <p>The attribute &lsquo;<span><em>feasibility</em></span>&rsquo; has two categories: <em>feasible</em><em> agents </em>(73%),&nbsp;and <em>infeasible agents</em> (27%). <span>Infeasible agents are agents with negative utility score and negative activity time corresponding to at least one activity.</span>&nbsp;</p> <p>File name: 1_syn_pop_all.parquet</p> <table> <tbody> <tr> <td> <p><strong>Column</strong></p> </td> <td> <p><strong>Description</strong></p> </td> <td> <p><strong>Data type</strong></p> </td> <td> <p><strong>Unit</strong></p> </td> </tr> <tr> <td> <p>PId</p> </td> <td> <p>Agent ID</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td>Deso</td> <td>Zone code of Demographic statistical areas (DeSO)<sup>1</sup></td> <td>String</td> <td>-</td> </tr> <tr> <td> <pre>kommun</pre> </td> <td>Municipality code</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>marital&nbsp;</pre> </td> <td>Marital Status (single/ couple/ child)</td> <td>String</td> <td>-</td> </tr> <tr> <td> <pre>sex&nbsp;</pre> </td> <td>Gender (0 = Male, 1 = Female)</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>age</pre> </td> <td>Age</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>HId</pre> </td> <td>A unique identifier for households</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>HHtype&nbsp; </pre> </td> <td>Type of households (single/ couple/ other)</td> <td>String</td> <td>-</td> </tr> <tr> <td> <pre>HHsize&nbsp; </pre> </td> <td>Number of people living in the households</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>num_babies</pre> </td> <td>Number of children less than six years old in the household</td> <td>Integer</td> <td>-</td> </tr> <tr> <td>employment</td> <td>Employment Status (0 = Not Employed, 1 = Employed)</td> <td>Integer</td> <td>-</td> </tr> <tr> <td>studenthood</td> <td>Studenthood Status (0 = Not Student, 1 = Student)</td> <td>Integer</td> <td>-</td> </tr> <tr> <td>income_class</td> <td>Income Class (0 = No Income, 1 = Low Income, 2 = Lower-middle Income, 3 = Upper-middle Income, 4 = High Income)</td> <td>Integer</td> <td>-</td> </tr> <tr> <td>num_cars</td> <td>Number of cars owned by an individual&nbsp;</td> <td>Integer</td> <td>-</td> </tr> <tr> <td>HHcars</td> <td>Number of cars in the household</td> <td>Integer</td> <td>-</td> </tr> <tr> <td> <pre>feasibility</pre> </td> <td>Status of the individual (1=feasible, 0=infeasible)</td> <td>Integer</td> <td>-</td> </tr> </tbody> </table> <p>1 <a href="https://www.scb.se/vara-tjanster/oppna-data/oppna-geodata/deso--demografiska-statistikomraden/">https://www.scb.se/vara-tjanster/oppna-data/oppna-geodata/deso--demografiska-statistikomraden/</a></p> <h3>(2) Activity Plans of the Agents</h3> <p>The dataset contains the car agents&rsquo; (agents that use cars on the simulated day) activity plans for a simulated average weekday.&nbsp;&nbsp;&nbsp;</p> <p>File name:&nbsp;<span>2_plans_i.parquet, i = 0, 1, 2, ..., 8, 9. (10 files in total)</span></p> <table> <tbody> <tr> <td> <p><strong>Column</strong></p> </td> <td> <p><strong>Description</strong></p> </td> <td> <p><strong>Data type</strong></p> </td> <td> <p><strong>Unit</strong></p> </td> </tr> <tr> <td> <p>act_purpose</p> </td> <td> <p>Activity purpose (work/ home/ school/ other)</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>PId</p> </td> <td> <p>Agent ID</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>act_end&nbsp;</p> </td> <td> <p>End time of activity (0:00:00 &ndash; 23:59:59)</p> </td> <td> <p>String</p> </td> <td> <p>hour:minute:seco</p> <p>nd</p> </td> </tr> <tr> <td> <p>act_id</p> </td> <td> <p>Activity index of each agent</p> </td> <td> <p>Integer</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>mode</p> </td> <td> <p>Transport mode to reach the activity location</p> </td> <td> <p>String</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>POINT_X&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;</p> </td> <td> <p>Coordinate X of activity location (SWEREF99TM)</p> </td> <td> <p>Float</p> </td> <td> <p>metre</p> </td> </tr> <tr> <td> <p>POINT_Y</p> </td> <td> <p>Coordinate Y of activity location (SWEREF99TM)</p> </td> <td> <p>Float</p> </td> <td> <p>metre</p> </td> </tr> <tr> <td> <p>dep_time&nbsp;&nbsp;&nbsp;&nbsp;</p> </td> <td> <p>Departure time (0:00:00 &ndash; 23:59:59)</p> </td> <td> <p>String</p> </td> <td> <p>hour:minute:seco</p> <p>nd</p> </td> </tr> <tr> <td> <p>score</p> </td> <td> <p>Utility score of the simulation day as obtained from MATSim</p> </td> <td> <p>Float</p> </td> <td> <p>-</p> </td> </tr> <tr> <td> <p>trav_time&nbsp; &nbsp;</p> </td> <td> <p>Travel time to reach the activity location</p> </td> <td> <p>String</p> </td> <td> <p>hour:minute:seco</p> <p>nd</p> </td> </tr> <tr> <td> <p>trav_time_min&nbsp;&nbsp;&nbsp;&nbsp;</p> </td> <td> <p>Travel time in decimal minute</p> </td> <td> <p>Float</p> </td> <td> <p>minute</p> </td> </tr> <tr> <td> <p>act_time&nbsp;</p> </td> <td> <p>Activity duration in decimal minute</p> </td> <td> <p>Float</p> </td> <td> <p>minute</p> </td> </tr> <tr> <td> <p>distance</p> </td> <td> <p>Travel distance between the origin and the destination</p> </td> <td> <p>Float</p> </td> <td> <p>km</p> </td> </tr> <tr> <td> <p>speed</p> </td> <td> <p>Travel speed to reach the activity location</p> </td> <td> <p>Float</p> </td> <td> <p>km/h</p> </td> </tr> </tbody> </table> <h3>(3) Travel Trajectories of the Agents</h3> <p>This dataset contains the driving trajectories of all the agents on the road network,&nbsp;<span>and the public transit vehicles used by these agents, including buses, ferries, trams etc. The files are produced by MATSim simulations and organised into 10 *.parquet&rsquo; files (representing different batches of simulation) corresponding to each plan file.</span></p> <p>File name:&nbsp;<span>3_events_i.parquet, i = 0, 1, 2, ..., 8, 9. (10 files in total)</span></p> <p>&nbsp;</p> <table> <tbody> <tr> <td> <div> <div> <p><strong>Column&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Description&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Data type&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Unit&nbsp;</strong></p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>time&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Time in second in a simulation day (0-86399)&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>second&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>type&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Event type defined by MATSim simulation*&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>String&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>person&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Agent ID&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Nearest road link consistent with&nbsp;the road network&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>String&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>vehicle&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Vehicle ID identical to person&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>from_node&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Start node of the link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>to_node&nbsp; &nbsp;</p> </div> </div> </td> <td> <div> <div> <p>End node of the link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> </tbody> </table> <p>* One typical episode of MATSim simulation events: Activity ends (actend) -&gt; Agent&rsquo;s vehicle enters traffic (vehicle enters traffic) -&gt; Agent&rsquo;s vehicle moves from previous road segment to its next connected one (left link) -&gt; Agent&rsquo;s vehicle leaves traffic for activity (vehicle leaves traffic) -&gt; Activity starts (actstart)&nbsp;</p> <h3>(4) Road Network</h3> <p>This dataset contains the road network.</p> <p>File name: 4_network.shp</p> <table> <tbody> <tr> <td> <div> <div> <p><strong>Column&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Description&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Data&nbsp;type&nbsp;</strong></p> </div> </div> </td> <td> <div> <div> <p><strong>Unit&nbsp;</strong></p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>length&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>The length of road link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Float&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>metre&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>freespeed&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Free speed&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Float&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>km/h&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>capacity&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Number of vehicles&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>permlanes&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Number of lanes&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>oneway&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Whether the segment is one-way (0=no, 1=yes)&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>modes&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Transport mode&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>String&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>from_node&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Start node of the link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>to_node&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>End node of the link&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>Integer&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>-&nbsp;</p> </div> </div> </td> </tr> <tr> <td> <div> <div> <p>geometry&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>LINESTRING (SWEREF99TM)&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>geometry&nbsp;</p> </div> </div> </td> <td> <div> <div> <p>metre&nbsp;</p> </div> </div> </td> </tr> </tbody> </table> <p>&nbsp;</p> <p><strong><span>Additional Notes</span></strong></p> <p><span>This research is funded by the RISE Research Institutes of Sweden, the Swedish Research Council for Sustainable Development (Formas, project number 2018-01768), and Transport Area of Advance, Chalmers.</span></p> <p><strong><span>Contributions</span></strong></p> <p><span>YL designed the simulation, analyzed the simulation data, and, along with CT, executed the simulation. CT, SD, FS, and SY conceptualized the model (SySMo), with CT and SD further developing the model to produce agents and their activity plans. KG wrote the data document. All authors reviewed, edited, and approved the final document.</span></p>

opencc-by-4.0Feb 2024View details →
zenodo44/100

Snow equi-temperature metamorphism described by a phase-field model applicable on micro-tomographic images: prediction of microstructural and transport properties

<p>This dataset provides data described and used in the article submitted to Journal of Advances in Modeling Earth Systems &quot;Snow equi-temperature metamorphism described by a phase-field model applicable on micro-tomographic images: prediction of microstructural and transport properties&quot;.</p> <p>It contains .csv files with different properties computed on outputs of the model Snow3D simulating equi-temperature metamorphism. This micro-scale model was used here with experimental micro-tomographic snow images as input and returns series of 3-D images of snow showing features of equi-temperature metamorphism at different time steps as output.</p> <p>In this dataset, you will find two types of files:</p> <p>- the microstructural properties (density, specific surface area, covariance lengths, mean curvature) computed on&nbsp; the simulated images at different time steps.</p> <p>- the transport properties (effective conductivity, normalizes effective vapor diffusion coefficient, permeability) of the simulated images at different time steps.</p> <p>Finally, metadata_simulations.csv gather the information relative to the simulations.</p>

opencc-by-4.0Jan 2022View details →
zenodo44/100

Sensitivity experiment data using the CHASER chemical transport model for investigation of lower-tropospheric spring ozone enhancement over Hanoi

<p>This is the data from the numerical model experiment for investigating the relative importance of different emission source regions on the spring ozone enhancement in the lower troposphere over Hanoi, Vietnam. The details of the investigation are written in the paper by Ogino et al. (2022, Journal of Geophysical Research, Atmosphere, in revision).</p> <p><strong>Experiment description</strong></p> <p>We performed sensitivity experiments using the global chemical-transport model, CHASER (Sudo et al., 2002) with T42 horizontal resolution (approximately 2.8 degrees longitude &times; 2.8 degrees latitude) and 32 vertical layers from the surface up to 10 hPa in sigma coordinate. The two-hourly model outputs interpolated onto the constant pressure levels at 1000, 990, 970, 930, 870, 790, 700, 610, 530, 460, 400, 350, 300, 260, 230, 200, 176, 153, 133, 116, and 100 hPa were used in this study. Note that the updated model, MIROC-Chem (Miyazaki et al., 2017; Watanabe et al., 2011), includes more detailed chemical processes for both troposphere and stratosphere. Nevertheless, CHASER already includes the most important chemical processes in the NOx-CO-Ozone reactions and can be used to evaluate the impact of NOx emissions on ozone productions. In addition, the simulated ozone performance, as well as ozone response to NOx emissions, are comparable between CHASER and MIROC-Chem (Miyazaki et al., 2020). Thus, the results should not be sensitive to the choice of model.</p> <p>The surface emissions of major ozone precursors, such as carbon monoxide (CO), nitrogen oxide (NOx), and nonmethane hydrocarbons, were included in the model based on the published emission inventories (the Emission Database for Global Atmospheric Research (EDGAR) version 4.2 (EC-JRC/PBL, 2011), the monthly Global Fire Emissions Database (GFED) version 3.1 (van der Werf et al., 2010), and monthly mean Global Emissions Inventory Activity (GEIA) (Graedel et al., 1993)). We employed daily NOx and CO emissions that were optimized using the assimilation of satellite NO2 and CO measurements, where the a priori emissions were constructed based upon bottom-up emission inventories (Miyazaki et al., 2015; 2017). These emissions, including both anthropogenic and biomass burning components, used were obtained from the Tropospheric Chemistry Reanalysis version 1 (TCR-1, Miyazaki et al., 2015) and enabled us to evaluate the emission impacts for individual sources.</p> <p>In the sensitivity experiments, we eliminated the emissions of ozone precursors from the following three source regions: the Indian subcontinent, the northern Indochina Peninsula, and southern China. We conducted spin-up calculations with the optimized emissions for all regions (i.e., standard emissions) from January 1st to the end of February in each year for 10 years from 2005 to 2014. Then, we performed four types of experiments from March 1st to 21st: the control experiment with the standard emissions, and the three sensitivity experiments with the elimination of emission from the above-mentioned three regions, namely the Indian subcontinent, the northern Indochina, the southern China experiments. Because of the non-linear chemistry, the cumulative response from the sensitivity calculations can be different from the total ozone response in the control simulation to some extent as shown by the HTAP modeling works (Turnock et al., 2018; Wild et al., 2012). Nevertheless, they provided important information on the relative contributions of emission sources from different regions. The results of the sensitivity experiments will be compared with the control experiment to investigate the relative contributions of individual emission sources to the ozone enhancement over Hanoi.</p> <p><strong>Files</strong></p> <ul> <li>O3_Fullyear_[YYYY].nc: The 2-hourly data of ozone mixing ratio obtained in the control experiment from January 1 to December 31 in year [YYYY] from 2005 to 2014.</li> <li>[Param]_March_[YYYY].nc: The 2-hourly data obtained in the sensitivity experiment from Mar 1 to 21 in every year [YYYY] from 2005 to 2014. [Param] is one of&nbsp; the following: <ul> <li>O3_Control: Ozone mixing ratio in the control experiment</li> <li>O3_IndianSubcontinent: Ozone mixing ratio in the Indian Subcontinent experiment</li> <li>O3_NorthernIndochina: Ozone mixing ratio in the northern Indochina experiment</li> <li>O3_SouthernChina: Ozone mixing ratio in the southern China experiment</li> <li>CO: Carbon monoxide</li> <li>T: Temperature</li> <li>U: Zonal wind</li> </ul> </li> <li>CO_Emission.nc and NOx_Emission.nc: The monthly mean CO and NOx emissions from the surface used in the model experiments.</li> </ul> <p><strong>Contact</strong></p> <p>Shin-Ya Ogino<br> Japan Agency for Marine-Earth Science and Technology (JAMSTEC)<br> E-mail: ogino-sy@jamstec.go.jp</p>

opencc-by-4.0Apr 2022View details →
zenodo44/100

The International Transport Energy Modeling (iTEM) Open Data & Harmonized Transport Database

<p>This dataset and documentation contains detailed information of the iTEM Open Database, a harmonized transport data set of historical values, 1970 - present. It aims to create transparency through two key features:</p> <ul> <li>Open-Data: Assembling a comprehensive collection of publicly-available&nbsp;transportation data</li> <li>Open-Code: All code and documentation will be publicly accessible and&nbsp;open for modification and extension.&nbsp;<a href="https://github.com/transportenergy">https://github.com/transportenergy</a></li> </ul> <p>The iTEM Open Database is comprised of individual datasets collected from&nbsp;public sources. Each dataset is downloaded, cleaned, and harmonised to the&nbsp;common region and technology definitions defined by the iTEM consortium https://transportenergy.org. For each dataset, we describe the name of the dataset, the web link to the original source, the web link to the cleaning script (in python), variables, and explain the data cleaning steps (which explains the data cleaning script in plain English).</p> <p>Shall you find any problems with the dataset, please report the issues here&nbsp;<a href="https://github.com/transportenergy/database/issues">https://github.com/transportenergy/database/issues</a>.&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Sep 2024View details →
zenodo44/100

Model data and code for "Freeze-thaw effects on daily sediment transport in an Alpine river"

<p>Supporting information for the research article "Freeze-thaw effects on daily sediment transport in an Alpine river" by Sk&aring;lev&aring;g et al., submitted to Water Resources Research.</p> <p>This data repository contains the processed data, model code, and results presented in the research article. Please refer to the article and its supplementary information for details on primary data.</p> <p>&nbsp;</p> <p><strong>Contents:</strong></p> <ul> <li>processed data: <ul> <li>Standardised target and predictor variables, in addition to non-standardised data used for freeze-thaw state classification <a href="https://zenodo.org/api/records/13928999/draft/files/model_variables.csv/content" target="_blank" rel="noopener noreferrer">model_variables.csv</a></li> <li>Means and standard deviations of standardised variables <a href="https://zenodo.org/api/records/13928999/draft/files/regression_variables_mean_std.csv/content" target="_blank" rel="noopener noreferrer">regression_variables_mean_std.csv</a></li> </ul> </li> <li>model code: <ul> <li>final model presented in research article: <a href="https://zenodo.org/api/records/13928999/draft/files/model.py/content" target="_blank" rel="noopener noreferrer">model.py</a></li> <li>model comparison performed as part of model development:&nbsp;<a href="https://zenodo.org/api/records/13928999/draft/files/model_comparison_predictors_and_segmentation.html/content" target="_blank" rel="noopener noreferrer">model_comparison_predictors_and_segmentation.html</a></li> </ul> </li> <li>results: <ul> <li>final model: <ul> <li>Inference trace from the pymc model <a href="https://zenodo.org/api/records/13928999/draft/files/inference.nc/content" target="_blank" rel="noopener noreferrer">inference.nc</a></li> <li>Summary table of the inference trace <a href="https://zenodo.org/api/records/13928999/draft/files/inference_summary.csv/content" target="_blank" rel="noopener noreferrer">inference_summary.csv</a></li> <li>Visualisation of the inference trace <a href="https://zenodo.org/api/records/13928999/draft/files/inference_trace.png/content" target="_blank" rel="noopener noreferrer">inference_trace.png</a></li> </ul> </li> <li>other models: <ul> <li>non-segmented sediment rating curve: <a href="https://zenodo.org/api/records/13928999/draft/files/inference_SRC.nc/content" target="_blank" rel="noopener noreferrer">inference_SRC.nc</a> and <a href="https://zenodo.org/api/records/13928999/draft/files/inference_summary_SRC.csv/content" target="_blank" rel="noopener noreferrer">inference_summary_SRC.csv</a></li> <li>non-segmented "pooled" model with all predictors: <a href="https://zenodo.org/api/records/13928999/draft/files/inference_summary_full_nonsegmented.csv/content" target="_blank" rel="noopener noreferrer">inference_summary_full_nonsegmented.csv</a></li> <li>freeze-thaw-state-segmented sediment rating curve: <a href="https://zenodo.org/api/records/13928999/draft/files/inference_summary_segm_SRC.csv/content" target="_blank" rel="noopener noreferrer">inference_summary_segm_SRC.csv</a></li> <li>freeze-thaw-state-segmented "unpooled" model with all predictors:&nbsp;<a href="https://zenodo.org/api/records/13928999/draft/files/inference_summary_full_unpooled.csv/content" target="_blank" rel="noopener noreferrer">inference_summary_full_unpooled.csv</a></li> </ul> </li> <li>model comparison: <ul> <li><a href="https://zenodo.org/api/records/13928999/draft/files/model_comparison_waic.csv/content" target="_blank" rel="noopener noreferrer">model_comparison_waic.csv</a></li> <li> <div><a href="https://zenodo.org/api/records/13928999/draft/files/model_comparison_loo.csv/content" target="_blank" rel="noopener noreferrer">model_comparison_loo.csv</a></div> </li> </ul> </li> </ul> </li> </ul>

opencc-by-4.0Oct 2024View details →
zenodo44/100

Coupling Microkinetics with Continuum Transport Models to Understand Electrochemical CO2 Reduction in Flow Reactors

<p>Data supporting the manuscript published in PRX Energy titled &quot;Coupling Microkinetics with Continuum Transport Models to Understand Electrochemical CO2 Reduction in Flow Reactors&quot;. Jupyter notebook and included data for recreating the figures in the paper and for additional analysis.</p>

opencc-by-4.0Aug 2023View details →
zenodo40/100

Data related to the manuscript "Bayesian Calibration and Validation of a Large-scale and Time-demanding Sediment Transport Model"

<p>1) Riverbed_Elevation_Measurements.txt<br> &nbsp;&nbsp;&nbsp; Description: Measured riverbed geometry of available years<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevation 2002 [m asl], Elevation 2005 [m asl], Elevation 2010 [m asl], Elevation&nbsp;&nbsp;&nbsp;<br> &nbsp;&nbsp;&nbsp; 2013 [m asl]<br> ----------------------------------------------------------------------------------------------------------------------------<br> 2) Hydro_FT_2D_manual.txt<br> &nbsp;&nbsp; &nbsp;Description: Simulation results of the manually calibrated full model<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevation 2005 [m asl], Elevation 2010 [m asl], Elevation 2013 [m asl]</p> <p>3.1) Hydro_FT_2D_CollocationPointBase.txt<br> &nbsp;&nbsp; &nbsp;Description: Parameter combinations of the collocation point base for each of the 20 simulations conducted with the full model to&nbsp;<br> &nbsp;&nbsp;&nbsp; construct the surrogate<br> &nbsp;&nbsp; &nbsp;Rows: Critical Shields parameter, Grain Roughness, Grain Size distribution</p> <p>3.2) Hydro_FT_2D_CollocationResults.txt<br> &nbsp;&nbsp; &nbsp;Description: Simulation results of the 20 simulations conducted with the full model at the collocation points<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2005 [m asl] of simulation 1 through 20, Node ID, Easting [m asl], Northig<br> &nbsp;&nbsp;&nbsp; [m asl], Elevations 2010 [m asl] of simulation 1 through 20, Node ID, Easting [m asl], Northig [m asl], Elevations 2013 [m asl] of<br> &nbsp;&nbsp;&nbsp; simulation 1 through 20<br> ----------------------------------------------------------------------------------------------------------------------------<br> 4.1) aPC_MC_N_Combinations_Weights_prior.txt<br> &nbsp;&nbsp; &nbsp;Description: ID of prior MC runs with tested parameter combinations and corresponding importance weights<br> &nbsp;&nbsp; &nbsp;Rows: ID of MC runs, Critical Shields parameter, Grain Roughness, Grain Size distribution, importance weights<br> 4.2) aPC_MC_2005_prior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of prior MC runs for 2005<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2005 [m asl] of MC run 1 through 100,000<br> 4.3) aPC_MC_2010_prior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of prior MC runs for 2010<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2010 [m asl] of MC run 1 through 100,000<br> 4.4) aPC_MC_2013_prior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of prior MC runs for 2013<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2013 [m asl] of MC run 1 through 100,000<br> &nbsp;&nbsp; &nbsp;<br> 4.5) aPC_MC_N_Combinations_Weights_posterior.txt<br> &nbsp;&nbsp; &nbsp;Description: ID of accepted (posterior) MC runs with tested parameter combinations and corresponding importance weights<br> &nbsp;&nbsp; &nbsp;Rows: ID of accepted MC runs, Critical Shields parameter, Grain Roughness, Grain Size distribution, importance weights<br> 4.6) aPC_MC_2005_posterior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of posterior MC runs for 2005<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2005 [m asl] of accepted MC run 1 through 857<br> 4.7) aPC_MC_2010_posterior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of posterior MC runs for 2010<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevations 2010 [m asl] of accepted MC run 1 through 857<br> 4.8) aPC_MC_2013_posterior.txt<br> &nbsp;&nbsp; &nbsp;Description: aPC surrogate results of posterior MC runs for 2013<br> &nbsp;&nbsp; &nbsp;Columns: Node ID, Easting [m], Northig [m], Elevation 2013 [m asl] of accepted MC run 1 through 857<br> ----------------------------------------------------------------------------------------------------------------------------<br> 5) aPC_MAP.txt<br> &nbsp;&nbsp;&nbsp; Description: Simulation results conducted with the stochastically calibrated aPC surrogate model using the MAP parameter&nbsp;<br> &nbsp;&nbsp;&nbsp; combination<br> &nbsp;&nbsp;&nbsp; Columns: Node ID, Easting [m], Northig [m], Elevation 2005 [m asl], Elevation 2010 [m asl], Elevation 2013 [m asl]</p> <p>6) Hydro_FT_2D_MAP.txt<br> &nbsp;&nbsp;&nbsp; Description: Simulation results conducted with the stochastically calibrated full model using the MAP parameter combination<br> &nbsp;&nbsp;&nbsp; Columns: Node ID, Easting [m], Northig [m], Elevation 2005 [m asl], Elevation 2010 [m asl], Elevation 2013 [m asl]<br> ----------------------------------------------------------------------------------------------------------------------------<br> 7) dz.txt<br> &nbsp;&nbsp;&nbsp; Description: Riverbed Evolution for all nodes in the section of interest (n=1138) obtained with differently calibrated models for all&nbsp;&nbsp;&nbsp;&nbsp;<br> &nbsp;&nbsp;&nbsp; considered time periods<br> &nbsp;&nbsp;&nbsp; Columns: Node ID, Easting [m asl], Northig [m asl], aPC_prior 2005 [m], aPC_posterior 2005 [m], aPC_MAP 2005 [m],&nbsp;<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2005 [m], Hydro_FT-2D_manual 2005 [m], aPC_prior 2010 [m], aPC_posterior 2010 [m], aPC_MAP 2010 [m],<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2010 [m], Hydro_FT-2D_manual 2010 [m], aPC_prior 2013 [m], aPC_posterior 2013 [m], aPC_MAP 2013 [m],<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2013 [m], Hydro_FT-2D_manual 2013 [m]</p> <p>8) dz_CalibrationNodes.txt<br> &nbsp;&nbsp;&nbsp; Description: Riverbed Evolution for calibration nodes (n=204) obtained with differently calibrated models for all considered time<br> &nbsp;&nbsp;&nbsp; periods<br> &nbsp;&nbsp;&nbsp; Columns: Node ID, Easting [m asl], Northig [m asl], aPC_prior 2005 [m], aPC_posterior 2005 [m], aPC_MAP 2005 [m],&nbsp;<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2005 [m], Hydro_FT-2D_manual 2005 [m], aPC_prior 2010 [m], aPC_posterior 2010 [m], aPC_MAP 2010 [m],<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2010 [m], Hydro_FT-2D_manual 2010 [m], aPC_prior 2013 [m], aPC_posterior 2013 [m], aPC_MAP 2013 [m],<br> &nbsp;&nbsp;&nbsp; Hydro_FT-2D_MAP 2013 [m], Hydro_FT-2D_manual 2013 [m]</p> <p>&nbsp;</p>

opencc-by-4.0Dec 2019View details →
zenodo40/100

Dataset for "Experimental and Modeling Insights into Mixing-Limited Reactive Transport in Heterogeneous Porous Media: Role of Stagnant Zones"

<p>This dataset contains the observed and simulated BTC of bimolecular transport experiment that was involved in "Yin et al., Experimental and Modeling Insights into Mixing-Limited Reactive Transport in Heterogeneous Porous Media: Role of Stagnant Zones".</p>

opencc-by-4.0Mar 2024View details →
zenodo40/100

UF & UAB's Phase 2 Demonstration Study: Developing a Model to Support Transportation System Decisions considering the Experiences of Drivers of all Age Groups with Autonomous Vehicle Technology (Project A3)

<p>Enclosed you will find the data collected during our STRIDE Phase II research project (A3) and a data dictionary.</p>

opencc-by-4.0May 2022View details →
zenodo40/100

Model output data and code for Zhang et al., Cross-cutting scenarios and strategies for designing decarbonization pathways in the transport sector toward carbon neutrality

<p>Model output data and code for &quot;Zhang et al., Cross-cutting scenarios and strategies for designing decarbonization pathways in the transport sector toward carbon neutrality&quot; in Nature Communications.</p>

opencc-by-4.0Jun 2022View details →
zenodo40/100

GENeSYS-MOD Transport Sensitivities: Data and model code for Hainsch (preprint): Identifying policy areas for the transition of the transportation sector

<p>This dataset contains all GENeSYS-MOD input data for Hainsch (preprint): Identifying policy areas for the transition of the transportation sector. doi: 10.5281/zenodo.6919452.</p> <p>With the input data files and the GAMS files, the model results presented in the preprint can be replicated.</p> <p>Furthermore, the output folder contains the result files for the base case and all sensitivities as well as the Tableau files which were used to generate the result figures.</p>

opencc-by-4.0Jul 2022View details →
zenodo40/100

Full Inverse Velocity Fields for "Transport of Antarctic Bottom Water entering the Brazil Basin in a Planetary Geostrophic Inverse Model"

<p>Velocity fields on all approximate neutral surfaces from the inverse model presented in &quot;Transport of Antarctic Bottom Water entering the Brazil Basin in a Planetary Geostrophic Inverse Model&quot;. The pressure of the approximate neutral surface is contoured in the background. The number in the title represents the pressure of the approximate neutral surface at the reference station in the Hunter Channel.</p>

opencc-by-4.0Sep 2022View details →
zenodo40/100

Data supplement to "From Grains to Plastics: Modeling Nourishment Patterns and Hydraulic Sorting of Fluvially Transported Materials in Deltas"

<p>Supplementary data and codes for&nbsp;&quot;From Grains to Plastics: Modeling Nourishment Patterns and Hydraulic Sorting of Fluvially Transported Materials in Deltas&quot;. Zipped files contain ANUGA hydrodynamic model outputs, dorado particle-routing simulation outputs, Python scripts for running additional dorado simulations, and other metadata used in the analysis of dorado outputs.&nbsp;See README for additional details about directory contents.&nbsp;Note that this directory does not contain the model software itself, which is available on GitHub and has been archived elsewhere&nbsp;(relevant links can be found in README).</p>

opencc-by-4.0Oct 2022View details →
zenodo40/100

Fig. 3 in Transportation of microplastic during high-flow and low-flow seasons in southeastern Black Sea: A modelling approach

Fig. 3 — Snapshots of microplastic distribution on southeastern Black Sea in high-flow (S1, S2, and S3) and low-flow (S4, S5, and S6)

opencc-by-4.0Aug 2022View details →
zenodo40/100

Research data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach"

<div><strong>Research Data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em></strong></div> <div>&nbsp;</div> <div>Dear reader,</div> <div>&nbsp;</div> <div>reasearch data are provided for the research article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em> (https://doi.org/10.1016/j.advwatres.2024.104763). The authors hope that the research data allows for a better understanding of the modeling workflow. The research data covers the following files:</div> <div> <ul> <li>Python scripts to create the models <ul> <li>Model scripts using FloPy (Bakker et al., 2016) are stored as .py files in './model_data/flopy_scripts/', named 'model_variant_vXYZ.py', where 'XYZ' is a wildcard for the model number.&nbsp;</li> <li>--&gt; Note that model numbers correspond to the different model variants as referred to in the article, see overview below.</li> <li>The model scripts require postfix files, stored in './model_data/flopy_scripts/postfix/', a PHREEQC database file, stored in './model_data/flopy_scripts/template_database/', as well as spreadsheets that contain the initial concentrations as well as reaction rate parameters needed by PHT3D, stored as .xlsx files in './model_data/flopy_scripts/', to create the models.</li> <li>Note that the .xlsx files are used by PHT3D-FSP in the model scripts to generate relevant PHT3D input files (compare https://doi.org/10.5281/zenodo.7559750 for more details).</li> </ul> </li> <li>SEAWAT/PHT3D input files <ul> <li>Original SEAWAT and PHT3D input files, which were created with the corresponding model scripts previously (see step before).</li> <li>Input files are stored in './model_data/model_files/vXYZ/model_files/' for each model variant, where 'XYZ' is a wildcard for the model number.</li> <li>SEAWAT/PHT3D executables can directly run the model files files. Thus, the files don't need to be re-created via the previous step.</li> </ul> </li> <li>Model outputs <ul> <li>Model output data is stored as NumPy arrays in './model_data/model_files/vXYZ/npy_arrays/', where 'XYZ' is a wildcard for the model number.</li> <li>The script './model_data/flopy_scripts/template_output/pht3d_output_hpc_v006.py' was used to generate the output files.</li> <li>2-D species concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/species/', where 'XYZ' is a wildcard for the model number.</li> <li>Species min./max. concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/min_max/', where 'XYZ' is a wildcard for the model number.</li> <li>2-D water budget arrays (CH &amp; WEL boundaries) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/budgets/', where 'XYZ' is a wildcard for the model number.</li> <li>Model discretization information (ncol, nrow, nlay etc.) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/discretization/', where 'XYZ' is a wildcard for the model number.</li> </ul> </li> <li>Figure files <ul> <li>Original figure files as well as the corresponding Python scripts to create the figures are stored in the subfolder'./figures'.</li> </ul> </li> </ul> <p>Numbering of the model variants is as follows:<br><br>v401 --&gt; VAR-conservative<br>v402 --&gt; VAR-OM<br>v403 --&gt; VAR-C/I<br>v404 --&gt; VAR-C/I/S<br>v405 --&gt; VAR-C/I/P<br>v406 --&gt; VAR-C/I/P/H<br>v407 --&gt; VAR-C/I/P/V<br>v408 --&gt; VAR-C/I/P-Co<br>v409 --&gt; VAR-all<br>v410 --&gt; VAR-all (no C)</p> </div> <div>&nbsp;</div> <div>Literature:</div> <div>&nbsp;</div> <div>Bakker, M., Post, V., Langevin, C.D., Hughes, J.D., White, J.T., Starn, J.J. and Fienen, M.N., 2016. Scripting MODFLOW model development using Python and FloPy. Groundwater, 54(5), pp.733-739. https://doi.org/10.1111/gwat.12413</div> <div>&nbsp;</div> <div>Seibert, S.L., Massmann, G., Meyer, R., Post, V.E.A., Greskowiak, J., 2024. Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach. Advances in Water Resources. https://doi.org/10.1016/j.advwatres.2024.104763</div> <div>&nbsp;</div> <div><strong>Contact one of the authors if you have further questions</strong>: Stephan L. Seibert (stephan.seibert@uol.de), Janek Greskowiak (janek.greskowiak@uol.de), Vincent E.A. Post (vincent@edinsi.nl), Rena Meyer (rena.meyer@uol.de) or Gudrun Massmann (gudrun.massmann@uol.de)</div>

opencc-by-4.0Jun 2024View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record