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45 results for “Trichoderma reesei”
Time and spatially-resolved Fourier-Transform Infrared (FTIR) Spectromicroscopy of cellulose in buffered reactions with Trichoderma reesei Cel7A
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Data from: Ruminal planktonic, weakly, and tightly feed-adhered bacterial community as affected by two <em>Trichoderma reesei</em> enzyme preparations fed to lactating cattle
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All data support the published articel "Loop-optimization of Trichoderma reesei endoglucanases for balancing the activity–stability trade-off through cross-strategy between machine learning and the B-factor analysis"
<p><em>Trichoderma reesei</em> endoglucanases (EGs) have limited industrial applications due to its low thermostability and activity. Here, we aimed to improve the thermostability of EGs from<em> T.reesei</em> without reducing its activity counteracting the activity-stability trade-off. A cross-strategy combination of machine learning and B-factor analysis was used to predict beneficial amino acid substitution in EG loop optimization. Experimental validation showed single-site mutated EG concomitantly improved enzymatic activity and thermal properties by 17.21%–18.06% and 49.85%–62.90%, respectively, compared with wild-type EGs. Furthermore, the mechanism explained mutant variants had lower RMSD values and a more stable overall structure than the wild type. According to this study, EGs loop optimization is crucial for balancing the activity-stability trade-off, which may provide new insights into how loop region function interacts with enzymatic characteristics. Moreover, the cross-strategy between machine learning and B-factor analysis improved superior enzyme activity-stability performance, which integrated structure-dependent and sequence-dependent information.</p>
Single-Molecule Image Sequences of Trichoderma reesei Cel7A and Variants on Cellulose Fibrils
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The effects of gul1 deletion on the transcriptome of Trichoderma reesei
GEO Series GSE147192. Trichoderma reesei. 6 samples. Type: Expression profiling by high throughput sequencing.
Kinetic transcriptome study reveals an essentially intact cellulase induction system in a cellulase hyper-producer Trichoderma reesei strain
GEO Series GSE60908. Trichoderma reesei. 32 samples. Type: Expression profiling by array.
Systemic analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction
GEO Series GSE39276. Trichoderma reesei. 6 samples. Type: Expression profiling by array.
Melanization of fungal necromass drives the upregulation of multiple chitinase, protease, and laccase genes when being degraded by Trichoderma reesei
GEO Series GSE263516. Trichoderma reesei. 9 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide RNA-seq analysis during CRE1-mediated carbon catabolite repression in Trichoderma reesei grown in sophorose
GEO Series GSE66915. Trichoderma reesei. 6 samples. Type: Expression profiling by high throughput sequencing.
RGS4 impacts carbohydrate and siderophore metabolism in Trichoderma reesei
GEO Series GSE216955. Trichoderma reesei. 12 samples. Type: Expression profiling by high throughput sequencing.
Trichoderma reesei transcript levels during mycoparasitism
GEO Series GSE23410. Trichoderma reesei. 6 samples. Type: Expression profiling by genome tiling array.
Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 reveals vib1 to be essential for cellulase induction
GEO Series GSE89199. Trichoderma reesei. 12 samples. Type: Expression profiling by high throughput sequencing.
Effect of the res-2 transcription factor gene deletion on protein secretion and stress response in the hyperproducer strain Trichoderma reesei Rut-C30
GEO Series GSE233738. Trichoderma reesei RUT C-30. 16 samples. Type: Expression profiling by high throughput sequencing.
The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
GEO Series GSE59600. Trichoderma reesei. 12 samples. Type: Expression profiling by high throughput sequencing.
Identification of microRNA-like RNAs in the filamentous fungus Trichoderma reesei by Solexa sequencing
GEO Series GSE46679. Trichoderma reesei. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Expression analysis of protein production in the filamentous fungus Trichoderma reesei (Hypocrea jecorina)
GEO Series GSE30458. Trichoderma reesei. 9 samples. Type: Expression profiling by array.
Genome-wide RNA-seq analysis during carbon catabolite repression in Trichoderma reesei reveals a multilevel control of cellulase production and action
GEO Series GSE57374. Trichoderma reesei. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome during shift of Trichoderma reesei from mycelial growth to asexual sporulation
GEO Series GSE27471. Trichoderma reesei. 4 samples. Type: Expression profiling by array.
Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose
GEO Series GSE46155. Trichoderma reesei; Trichoderma reesei QM9414. 3 samples. Type: Expression profiling by array.
ARA1 regulates not only L-arabinose but also D-galactose catabolism in Trichoderma reesei
GEO Series GSE104606. Trichoderma reesei. 28 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.