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615 results for “Tuning”

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zenodo52/100

Dataset of "Tuning the morphology and energy levels in organic solar cells with metal- organic framework nanosheets"

<p>Metal-organic framework nanosheets (MONs) have proved themselves to be useful<br>additives for enhancing the performance of a variety of thin film solar cell devices. However,<br>to date only isolated examples have been reported. In this work we take advantage of the<br>modular structure of MONs in order to resolve the effect of their different structural and<br>optoelectronic features on the performance of organic photovoltaic (OPV) devices. Three<br>different MONs were synthesized using different combinations of two porphyrin-based ligands<br>meso-tetracarboxyphenyl porphyrin (TCPP) or tetrapyridyl-porphyrin (TPyP) with either zinc<br>and/or copper ions and the effect of their addition to polythiophene-fullerene (P3HT-PCBM)<br>OPV devices was investigated. The power conversion efficiency (PCE) of devices was found to<br>approximately double with the addition of MONs of Zn2(ZnTCPP), but was unchanged with<br>the addition of Cu2(ZnTPyP) and halved upon the addition of Cu2(CuTCPP) compared to<br>devices without nanosheets. Our analysis indicates that there are three different mechanisms<br>by which MONs can influence the photoactive layer &ndash; light absorption, energy level alignment,<br>and morphological changes. Analysis of external quantum efficiency, UV-vis photoelectron<br>spectroscopy data found that MONs have similar effects on light absorption and energy level<br>alignment. However, atomic force and Raman microscopy studies revealed that the nanosheet<br>thickness and lateral size are crucial parameters in enabling the MONs to act as beneficial<br>additives resulting in an improvement of the OPV device performance. We anticipate this<br>study will aid in the design of MONs and other 2D materials for future use in other light<br>harvesting and emitting devices.</p>

opencc-by-4.0Jul 2024View details →
zenodo48/100

Dataset for the fine-tuning of parameters and hyper parameters, and the evaluation of the Scorca agent

<p># Scorca Data<br>This repository contains data collected during multiple tests of the Scorca agent.</p> <p>This data was used to generate the various plots seen in the ICAART paper titled ***Knowledge Modelling, Strategy Designing, and Agent Engineering for Reconnaissance Blind Chess***, and to forge decisions for the agent, i.e. with which strategy to go and which hyperparameters to use.&nbsp;</p> <p>It also contains multiple scripts used to generate the plots in the paper.</p> <p>## Project overview</p> <p>The project is organized into several key directories, each containing specific components of the Scorca agent's testing and data analysis:</p> <p>- /experiments: Contains various experimental data and scripts.<br>&nbsp; - /entropy_comp: Data and scripts related to entropy computation experiments.<br>&nbsp; - /piece_states_removal: Information on experiments involving the removal of piece states.<br>&nbsp; - /sense_comp: Contains sub-directories for adapted entropy, likely senses, and opponent move weight analysis.<br>- /misc_src: Miscellaneous source files and scripts.<br>&nbsp; - /efficiency: Scripts and data related to the efficiency analysis of the agent.<br>&nbsp; - /enemy_bot_movement: Data on enemy bot movement patterns and strategies.<br>&nbsp; - /history: Historical data and analysis scripts.<br>&nbsp; - /naive_entropy: Scripts for naive entropy calculations.<br>- /sense_comp: Sense computation related files.<br>&nbsp; - /all_possible_states: Tracking and analysis of all possible board states.<br>&nbsp; - /likely_senses: Data on the most likely senses used in various game scenarios.<br>&nbsp; - /opp_move_weight: Analysis of opponent move weight in different contexts.</p> <p>For the agent source code, please refer to the Scorca GitHub repository: https://github.com/Robinbux/Scorca.</p> <p>- Contact Robin in case of any inquiry (rb.stoehr@gmail.com)<br>- ⁠The licence is CC-BY 4.0.</p>

opencc-by-4.0Dec 2023View details →
zenodo48/100

Supplementary materials to the paper: Automatic Parameters Tuning of Late Reverberation Algorithms for Audio Augmented Reality

<p>Supplementary materials to the paper:</p> <blockquote> <p>Riccardo Bona, Davide Fantini, Giorgio Presti, Marco Tiraboschi, Isaac Engel and Federico Avanzini. 2022. Automatic Parameters Tuning of Late Reverberation Algorithms for Audio Augmented Reality. In <em>Proceedings of International Conference on Audio Mostly</em>.</p> </blockquote> <p>The supplementary materials include the reverberated audio stimuli employed in the MUSHRA listening test reported in the paper. For each type of audio stimuli (Drums, Sax and Speech) the version&nbsp;reverberated with each of the&nbsp;six&nbsp;target Room Impulse Responses (RIRs) is provided along with the versions reverberated using the reverb matching method proposed in the paper (two different artificial reverberators have been considered: FDN and Freeverb).</p> <p>Further, the reverberation times (<span class="math-tex">\(T_{20}\)</span>) per octave band for each considered RIR are provided.</p>

opencc-by-4.0Jul 2022View details →
zenodo48/100

Catalyst Supraparticles: Tuning the Structure of Spray‐Dried Pt/SiO2 Supraparticles via Salt‐Based Colloidal Manipulation to Control their Catalytic Performance

<p>This data publication is based on the metadata and raw datasets underlying the manuscript: P. Groppe, J. Reichstein, S. Carl, C. Cuadrado Collados, B.-J. Niebuur, K. Zhang, B. Apeleo Zubiri, J. Libuda, T. Kraus, T. Retzer, M. Thommes, E. Spiecker, S. Wintzheimer, K. Mandel, Catalyst Supraparticles: Tuning the Structure of Spray-Dried Pt/SiO2 Supraparticles via Salt-Based Colloidal Manipulation to Control their Catalytic Performance. Small 2024, 2310813. https://doi.org/10.1002/smll.202310813</p> <p>A detailed description of the dataset is given in the attached "Raw data assignment.xlsx"</p>

opencc-by-4.0Apr 2024View details →
zenodo44/100

Tuning the transport properties of biomolecules atom by atom.

<p>Data&nbsp; presented in the CECAM Conference:&nbsp;BioMolecular Electronics -- BIOMOLECTRO&nbsp;( link: <a href="https://www.cecam.org/workshop-details/246">https://www.cecam.org/workshop-details/246</a>).&nbsp;</p> <p>Here we discuss how point mutations can result in abrupt changes of the electron transfer properties of proteins, and the findings are rationalized using a combination of Ab-Initio and Molecular dynamics simulations. This&nbsp;is intended to provide an overview of the results published in several peer-reviewed freely available papers:</p> <p>J. Am. Chem. Soc. 139, 15337-15346 (2017)&nbsp; [DOI: 10.1021/jacs.7b06130]<br> Phys. Chem. Chem. Phys. 20, 30392 (2018) [DOI:10.1039/C8CP06862C]<br> Biomolecules&nbsp; 9, 611 (2019) [DOI:10.3390/biom9100611]<br> Biomolecules 9, 506 (2019) [DOI: 10.3390/biom9090506]</p>

opencc-by-4.0Apr 2020View details →
zenodo44/100

Trophic cascade driven by behavioural fine-tuning as naïve prey rapidly adjust to a novel predator

<p>The arrival of novel predators can trigger trophic cascades driven by shifts in prey numbers. Predators also elicit behavioural change in prey populations, via phenotypic plasticity and/or rapid evolution, and such changes may also contribute to trophic cascades. Here we document rapid demographic and behavioural changes in populations of a prey species (grassland melomys <em>Melomys burtoni</em>, a granivorous rodent) following the introduction of a novel marsupial predator (northern quoll <em>Dasyurus hallucatus</em>). Within months of quolls appearing, populations of melomys exhibited reduced survival and population declines relative to control populations. Quoll-invaded populations (<em>n </em>= 4) were also significantly shyer than nearby, quoll-free populations (<em>n </em>= 3) of conspecifics. This rapid but generalised response to a novel threat was replaced over the following two years with more threat-specific antipredator behaviours (i.e. predator-scent aversion). Predator-exposed populations, however, remained more neophobic than predator-free populations throughout the study. These behavioural responses manifested rapidly in changed rates of seed predation by melomys across treatments. Quoll-invaded melomys populations exhibited lower per-capita seed take rates, and rapidly developed an&nbsp;avoidance of seeds associated with quoll scent, with discrimination playing out over a spatial scale of tens of metres. Presumably the significant and novel predation pressure induced by quolls drove melomys populations to fine-tune behavioural responses to be more predator-specific through time. These behavioural shifts could reflect individual plasticity (phenotypic flexibility) in behaviour or may be adaptive shifts from natural selection imposed by quoll predation. Our study provides a rare insight into the rapid ecological and behavioural shifts enacted by prey to mitigate the impacts of a novel predator and shows that trophic cascades can be strongly influenced by behavioural as well as numerical responses.</p>

opencc-by-4.0Jul 2020View details →
zenodo44/100

Tuning the Thermal Stability and Photoisomerization of Azoheteroarenes through Macrocycle Strain

<p>Azobenzene and its derivatives are one of the most-widespread molecular scaffolds in a range of modern applications, as well as in fundamental research. After photoexcitation, azo-based photoswitches revert back to the most stable isomer in a timescale ( ) that determines the range of potential applications. Attempts to bring &nbsp;to extreme values prompted to the development of azobenzene and azoheteroarene derivatives that either rebalance the E- and Z- isomer stabilities, or exploit unconventional thermal isomerization mechanisms. In the former case, one successful strategy has been the creation of macrocycle strain, which tends to impact the E/Z stability asymmetrically, and thus significantly modify . On the bright side, bridged derivatives have shown an improved optical switching owing to the higher quantum yields and absence of degradation. However, in most (if not all) cases, bridged derivatives display a <em>reversed</em> thermal stability (more stable Z-isomer), and smaller &nbsp;than the acyclic counterparts, which restricts their potential interest to applications requiring a fast forward and backwards switch. In this paper, we investigate the impact of alkyl bridges to the thermal stability of phenyl-azoheteroarenes using computational methods, and we reveal that is indeed possible to combine such improved photo-switching characteristics while preserving the <em>regular</em> thermal stability (more stable E-isomer), and increased &nbsp;values under the appropriate connectivity and bridge length.</p>

opencc-by-4.0Sep 2020View details →
zenodo44/100

Using thin films of phase-change material for active tuning of terahertz waves scattering on dielectric cylinders

<p>The uploaded files contain the data generated by MATLAB and used to plot a part of the figures, and a sample code.</p> <p>Research supported by Narodowe Centrum Nauki, project no UMO-2020/39/I/ST3/02413.</p>

opencc-by-4.0Mar 2024View details →
zenodo44/100

Dataset of article entitled: "Tuning magnonic devices with on-chip permanent micromagnets"

<p>These are the dataset relative to paper entitled "Tuning magnonic devices with on-chip permanent micromagnets"&nbsp; published in <em>Physical Review Applied</em>&nbsp;</p>

opencc-by-4.0Nov 2024View details →
zenodo44/100

scGPT: End-to-End Protocol for Fine-tuned Retina Cell Type Annotation

<h1>Abstract</h1> <p>Single-cell research faces challenges in accurately annotating cell types at high resolution, especially when dealing with large-scale datasets and rare cell populations. To address this, foundation models like scGPT offer flexible, scalable solutions by leveraging transformer-based architectures. This protocol provides a comprehensive guide to fine-tuning scGPT for cell-type classification in single-cell RNA sequencing (scRNA-seq) data. We demonstrate how to fine-tune scGPT on a custom retina dataset, highlighting the model&rsquo;s efficiency in handling complex data and improving annotation accuracy achieving 99.5% F1-score. This protocol automates key steps, including data preprocessing, model fine-tuning, and evaluation. This protocol enables researchers to efficiently deploy scGPT for their own datasets. The provided tools, including a command-line script and Jupyter Notebook, simplify the customization and exploration of the model, proposing an accessible workflow for users with minimal Python and Linux knowledge. The protocol offers an off-the-shell solution of high-precision cell-type annotation using scGPT for researchers with intermediate bioinformatics.</p>

opencc-by-4.0Sep 2024View details →
zenodo44/100

Dataset for "Tuning the thermoelectric properties of boron-doped silicon nanowires integrated in a micro-harvester"

<p>Dataset including all data used for the elaboration of the work &quot;Tuning the thermoelectric properties of boron-doped silicon nanowires integrated in a micro-harvester&quot; published in Advanced Materials Technologies, 2022</p> <p><a href="https://doi.org/10.1002/admt.202101715">https://doi.org/10.1002/admt.202101715</a></p> <p>The files includes:</p> <p>&middot; INDIVIDUAL NW data:</p> <p>&nbsp;- I-V data of each NW at different temperatures</p> <p>&nbsp;- 3w&nbsp;data of each NW at different temperatures<br> &nbsp;- 4 SEM images of the NW, each of them used for assessing one NW parameter<br> &nbsp;&nbsp; &nbsp;- Tip: NW diameter 2<br> &nbsp;&nbsp; &nbsp;- Base: NW diameter 1<br> &nbsp;&nbsp; &nbsp;- Overall: NW length<br> &nbsp;&nbsp; &nbsp;- Tilted view at 45&ordm;: Relative NW heigh over substrate</p> <p>&middot; SEEBECK MEASUREMENT data:</p> <p>&nbsp;- Voc versus applied dT data for each substrate temperature<br> &nbsp;- File containig calibration data for all resistors</p> <p>&middot; TEM data:</p> <p>-TEM images of the studied NWs in .dm3 format.</p> <p>&middot; X-RAY FLUORESCENCE data:</p> <p>- Maps containing one energy spectrum per pixel in .hdf files.</p> <p>&middot; TIP-ENHANCED RAMAN SPECTROSCOPY&nbsp;data:</p> <p>- Maps containing one energy spectrum per pixel in a tabulated .txt file.</p> <p>&middot; POWER HARVESTED data:</p> <p>- IV curves of each microthermocouple connection X-Y upon different substrate temperatures in tabulated separated .txt files</p>

opencc-by-4.0Dec 2021View details →
zenodo44/100

SMART - Self-adaptive Machine Learning Approach for Real-time Tuning of IEEE 802.11 PHY and MAC layers

<p><strong>Introduction</strong></p> <p>Worldwide the demand for wireless access networks providing very high throughputs has been increasing exponentially, namely due to bandwidth-hungry applications such as high definition video streaming and augmented reality. In order to fulfil these requirements, the Wi-Fi standard was enriched with new amendments, such as IEEE 802.11n, IEEE 802.11ac, and recently IEEE 802.11ax (Wi-Fi 6). New parameters have been proposed for both physical (PHY) and media access control (MAC) layers, including channel bonding, short guard interval (SGI), and advanced modulation and coding schemes (MCS).</p> <p>However, the high variability of the signal strength in the wireless radio channel, allied to the channel asymmetry, makes the selection of optimal configurations for these parameters a challenge. Typically, these parameters are configured with a default value. For runtime optimization, some algorithms have already been proposed. Still, they were designed considering legacy IEEE 802.11 releases and static scenarios. Besides, these parameters have their trade-offs that need to be properly managed. To help dealing with this, machine learning has been recently introduced in wireless networks, providing the intelligence that networks need in order to be smart and self-adaptive.</p> <p>SWOP (Smart Wireless Optimization) is a cross-layer optimization approach for Wi-Fi networks extending the current Rate Adaptation (RA) approach, for instance, followed by the well-known Minstrel algorithm widely used in practice. Our approach takes advantage of Deep Reinforcement Learning (DRL) in order to learn the optimal Wi-Fi link configuration. By considering the wireless channel as the environment, the transmitter node (the agent) chooses the best link parameters (the action) in order to maximize the throughput (the reward) based on the channel metrics captured from the environment (the state). In this work we propose a simple DRL-based Wi-Fi Rate Adaptation (RA) algorithm, named Data-driven Algorithm for Rate Adaptation (DARA), which is one of the modules of Smart Wireless Optimization (SWOP)</p> <p>SMART aimed to run a set of wireless experiments on top of w-iLab.t testbeds provided by the Fed4FIRE+ project to directly validate our DRL model and learn a policy from the wireless experiments executed in a controlled environment. However, after facing difficulties with the scenarios we could achieve on the real testbed, we decided to train and test DARA using a trace-based simulation approach. In simulation, we could train our model in scenarios that are more complex and diverse whilst easy to configure, when compared to real testbeds. The w-iLab.t testbeds were still used to capture data traces (e.g. Signal-to-Noise Ratio, position of nodes, transmission power and link distance) that were then injected in ns-3 for validating DARA.</p> <p>With this work, we concluded that DARA performance is impacted when operating in scenarios with asymmetric links, which is common in the highly dynamic and unpredictable wireless environments. Furthermore, the asymmetry offset varies between scenarios and it may also change for the same scenario, as time progresses. This randomness is not addressed when solely considering the SNR as the link metric, posing a challenge in the learning phase of DARA. Despite these limitations, the results obtained show that DARA still achieves up to 14.9% higher throughput higher than Minstrel [1] &nbsp;and slightly lower than Ideal&nbsp; [2] for most of the scenarios. The results obtained will serve as a basis to support our ongoing and future research.</p> <p>&nbsp;</p> <p><strong>Folder Organization</strong></p> <p>The following dataset presents the results of the SMART project, organized in different folders for each Rate Adaptation Algorithm, as well as the traces that were used to obtain such results:</p> <ul> <li><strong>DARA: </strong>Results obtained using our solution <strong>(Naming Convention #1, Folder Content #1)</strong></li> <li><strong>MIN: </strong>Results obtained using Minstrel-HT <strong>(Naming Convention #1, Folder Content #2)</strong></li> <li><strong>ID: </strong>Results obtained using Ideal <strong>(Naming Convention #1, Folder Content #2)</strong></li> <li><strong>TRACES: </strong>Trace files used to obtain the results present in this dataset <strong>(Naming Convention #2, Folder Content #3)</strong></li> </ul> <p><strong>Naming Convention #1 &ndash; RAA TID TP TO:</strong></p> <ul> <li>Rate Adaptation Algorithm<strong> (RAA)&nbsp; </strong> <ul> <li><strong>drl </strong>&ndash; Data Driven Algorithm for Rate Adaptation</li> <li><strong>min </strong>&ndash; MinstrelHTWifiManager</li> <li><strong>id </strong>&ndash; IdealWifiManager</li> </ul> </li> <li>Trace ID<strong> (TID)</strong> <ul> <li><strong>3 </strong>up to<strong> 8</strong></li> </ul> </li> <li>Transport Protocol<strong> (TP)</strong> <ul> <li><strong>udp </strong>&ndash; User Datagram Protocol</li> </ul> </li> <li>Traffic Orientation<strong> (TO)</strong> <ul> <li><strong>normal </strong>&ndash; A<strong>-&gt;</strong>B</li> <li><strong>reversed </strong>&ndash; B<strong>-&gt;</strong>A</li> </ul> </li> </ul> <p><strong>Naming Convention #2 &ndash; TID_TXP:</strong></p> <ul> <li>Trace ID<strong> (TID)&nbsp; </strong> <ul> <li><strong>3 </strong>up to<strong> 8</strong></li> </ul> </li> <li>Transmitting Power in dBm <strong>(TXP)&nbsp; </strong> <ul> <li><strong>3, 5, 7, 9, 12 dBm </strong></li> </ul> </li> </ul> <p><strong>Folder Content #1: </strong></p> <ul> <li><em>checkpoint_ RAA TID TP TO</em><strong> (Folder)</strong> <ul> <li><strong>Policy Checkpoint</strong> with which the results were obtained</li> </ul> </li> <li> <ul> <li><strong>Flowmonitor </strong>output for the configured scenario</li> </ul> </li> <li> <ul> <li>Column 1 &ndash; <strong>Step Counter</strong></li> <li>Column 2 &ndash; <strong>Reward Value</strong></li> <li>Column 3 &ndash; <strong>Observation Value</strong></li> <li>Column 4 &ndash; <strong>Action Value</strong></li> </ul> </li> <li> <ul> <li>Column 1 &ndash; <strong>Simulation Time </strong>(seconds)</li> <li>Column 2 &ndash; <strong>Throughput </strong>(Mbit/100ms)</li> </ul> </li> </ul> <p><strong>Folder Content #2: </strong></p> <ul> <li> <ul> <li><strong>Flowmonitor </strong>output for the configured scenario</li> </ul> </li> <li> <ul> <li>Column 1 &ndash; <strong>Simulation Time </strong>(seconds)</li> <li>Column 2 &ndash; <strong>Throughput </strong>(Mbit/100ms)</li> </ul> </li> </ul> <p><strong>Folder Content #3 - </strong>Source: <a href="https://zenodo.org/record/3713271#.YjjBVDXLdhE">https://zenodo.org/record/3713271#.YjjBVDXLdhE</a><strong>: </strong></p> <p>&middot;&nbsp; <em>date_time</em><strong>.cfg </strong>configuration details of the experiment</p> <p>&middot;&nbsp; <em>date_time_NodeID</em><a href="https://zenodo.org/record/3713271#_ftn1"><strong><em><sup>[1]</sup></em></strong></a><em>_SenderID</em><a href="https://zenodo.org/record/3713271#_ftn2"><strong><em><sup>[2]</sup></em></strong></a><em>_ReceiverID</em><a href="https://zenodo.org/record/3713271#_ftn3"><strong><em><sup>[3]</sup></em></strong></a><em>_FlowType</em><a href="https://zenodo.org/record/3713271#_ftn4"><strong><em><sup>[4]</sup></em></strong></a><em>_Params</em><a href="https://zenodo.org/record/3713271#_ftn5"><strong><em><sup>[5]</sup></em></strong></a><strong>.snr </strong>&ndash; logs of the Signal/Noise ratio (1 file per node/flow) &nbsp;</p> <p>&middot;&nbsp; <em>date_time_NodeID_SenderID_ReceiverID_FlowType_Params</em><strong>.stats</strong> &ndash; logs of the packets received (1 file per node/flow) &nbsp;</p> <p><a href="https://zenodo.org/record/3713271#_ftnref1"><sub>[1]</sub></a><sub> ID of the node Logging node</sub></p> <p><a href="https://zenodo.org/record/3713271#_ftnref2"><sub>[2]</sub></a><sub> ID of the Sender node</sub></p> <p><a href="https://zenodo.org/record/3713271#_ftnref3"><sub>[3]</sub></a><sub> ID of the Receiver node</sub></p> <p><a href="https://zenodo.org/record/3713271#_ftnref4"><sub>[4]</sub></a><sub> Flow type: Unidirectional, Bidirectional or Unidirectional with Multiple Access</sub></p> <p><a href="https://zenodo.org/record/3713271#_ftnref5"><sub>[5]</sub></a><sub> Configurable parameters: Sender/Receiver Transmission Power and Data Rate (when applicable)</sub></p> <p>&nbsp;</p> <p><strong>References</strong></p> <p>1.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; F. FietKau, &ldquo;Minstrel_HT: New rate control module for 802.11n [LWN.net]&rdquo;. Mrt-2010.</p> <p>2.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &ldquo;ns-3: ns3::IdealWifiManager Class Reference,&rdquo; Jan 2021, [Online; accessed 23. Jun. 2021]. Available: <a href="https://www.nsnam.org/docs/release/3.33/doxygen/classns3_1_1_ideal_wifi%20manager.html">https://www.nsnam.org/docs/release/3.33/doxygen/classns3_1_1_ideal_wifi manager.html</a></p>

opencc-by-4.0Mar 2022View details →
zenodo44/100

Nanomechanical probing and strain tuning of the Curie temperature in suspended Cr2Ge2Te6-based heterostructures

<p>Data files for Figs. 1-5&nbsp;of the article &quot;Nanomechanical probing and strain tuning of the Curie temperature in suspended Cr<sub>2</sub>Ge<sub>2</sub>Te<sub>6</sub>-based heterostructures&quot; published in <em>npj 2D Materials and Applications</em>, DOI: , URL:&nbsp;</p>

opencc-by-4.0Apr 2022View details →
zenodo44/100

Single molecule dataset for article: Multistep orthophosphate release tunes actomyosin energy transduction

<table> <tbody> <tr> <td> <p>Dataset (single molecule movies) that is&nbsp;behind&nbsp;the results in the article&#39;s&nbsp;Figure 2 and Figure 3.</p> <p>MATLAB scripts used to analyze the dataset.&nbsp;</p> </td> </tr> </tbody> </table> <p>&nbsp;</p>

opencc-by-4.0Aug 2022View details →
zenodo44/100

Ion Implantation Sensor and Process Target Data for Predicting Ion Beam Tuning in Semiconductor Manufacturing

<h2><strong>Dataset Description:</strong></h2> <p>This dataset is designed to predict ion beam tuning setup processes in semiconductor manufacturing, in terms of tuning success or failure, and tuning duration. It is split into&nbsp;<strong><code>X</code></strong> and <code><strong>y</strong></code> to allow for supervised learning approaches.</p> <ul> <li><code><strong>X</strong></code> represents the current equipment condition and the process targets of the currently processed and the upcoming lot, as defined within recipes.</li> <li><code><strong>y</strong></code> represents the ion beam tuning setup report, which informs about the tuning success ratio and tuning duration. These setups are necessary, when switching between recipes to prepare the equipment for processing the next lot.&nbsp;<strong><code>y</code></strong> contains three labels, enabling classification of (1) tuning success or fail, and (2) prolonged tuning, as well as (3) estimation of tuning duration as a regression task.</li> </ul> <p>About <strong><code>X</code></strong>:</p> <p>Each lot is processed with a specific recipe to achieve the process target. The tuning takes place before the first wafer of the to-be-tuned recipe is processed. Each row in <strong><code>X</code></strong> includes logistical information such as the equipment used for processing and parsed recipe / process target information for the current and upcoming lot. The majority of data consists out of aggregated metrics of equipment-internally tracked sensor traces, recording physical parameters such as gas flows, temperatures, voltages and currents. When analyzed in conjunction with the processed recipe, these sensors provide insights into the current equipment condition.&nbsp;</p> <p>About <code><strong>y</strong></code>:</p> <p>The&nbsp;<code>setup_result</code> column indicates the success or failure of tuning - with <code>setup_result=0</code> indicating tuning success, while&nbsp;<code>setup_result=1</code> signals tuning failure. If the first tuning attempt fails, there may be follow-up attempts, but these are not included in this dataset. The&nbsp;<code>duration</code> column represents the tuning duration in seconds, as used for regression analysis. The&nbsp;<code>duration_interval</code> column is a binary label for prolonged tunings, i.e. <code>duration_interval=1</code> for instances, which take more than 6 minutes to tune.</p> <p>For reproducibility of the corresponding paper's results:</p> <ol> <li>The dataset contains the same carefully curated subset of features.</li> <li>The train_test_split() has already been performed, thus we provide&nbsp;<code>x_train</code> and <code>x_valid</code> separately.</li> <li>To reduce the effect of outliers in the data, the sensor data has already been scaled, as derived from&nbsp;<code>x_train</code>.</li> </ol> <p>In summary, these datasets (<code><strong>X</strong></code>, <code><strong>y</strong></code>) provide comprehensive information for predicting ion beam tuning in semiconductor manufacturing, making it a valuable resource for researchers and practitioners in the field.</p> <h2><strong>Python Code for Reproducibility:</strong></h2> <p>Furthermore, we share a jupyter notebook <code>ionbeamtuning.ipynb</code> with Python code to train the best performing model on the provided data, as described in the paper. To execute the code, you may need to install any missing packages specified in the <code>requirements.txt</code>, as indicated within the notebook.</p>

opencc-by-4.0Apr 2024View details →
zenodo44/100

AstroChat - A Dataset of synthetically generated conversations for LLM supervised fine-tuning in the domain of Space Mission Engineering and Astronautics

<h1>AstroChat Dataset Description</h1> <h2>Purpose and Scope</h2> <p>The AstroChat dataset is a collection of 901 dialogues, synthetically generated, tailored to the specific domain of Astronautics / Space Mission Engineering. This dataset will be frequently updated following feedback from the community. If you would like to contribute, please reach out in the community discussion.</p> <h2>Intended Use</h2> <p>The dataset is intended to be used for supervised fine-tuning of chat LLMs (Large Language Models). Due to its currently limited size, you should use a pre-trained instruct model and ideally augment the AstroChat dataset with other datasets in the area of (Science Technology, Engineering and Math).</p> <h2>DATASET DESCRIPTION</h2> <h3>Access</h3> <ul> <li>Manual download from Hugging face hub:&nbsp;<a href="https://huggingface.co/datasets/patrickfleith/Astro-Ultrachat" rel="nofollow">https://huggingface.co/datasets/patrickfleith/AstroChat</a></li> <li>Or with python:</li> </ul> <pre><code>from datasets import load_dataset dataset = load_dataset("patrickfleith/AstroChat") </code></pre> <h3>Structure</h3> <p>901 generated conversations between a simulated user and AI-assistant (more on the generation method below). Each instance is made of the following field (column):</p> <ul> <li><strong>id</strong>: a unique identifier to refer to this specific conversation. Useeful for traceability purposes, especially for further processing task or merge with other datasets.</li> <li><strong>topic</strong>: a topic within the domain of Astronautics / Space Mission Engineering. This field is useful to filter the dataset by topic, or to create a topic-based split.</li> <li><strong>subtopic</strong>: a subtopic of the topic. For instance in the topic of&nbsp;<code>Propulsion</code>, there are subtopics like&nbsp;<code>Injector Design</code>,&nbsp;<code>Combustion Instability</code>,&nbsp;<code>Electric Propulsion</code>,&nbsp;<code>Chemical Propulsion</code>, etc.</li> <li><strong>persona</strong>: description of the persona used to simulate a user</li> <li><strong>opening_question</strong>: the first question asked by the user to start a conversation with the AI-assistant</li> <li><strong>messages</strong>: the whole conversation messages between the user and the AI assistant in already nicely formatted for rapid use with the transformers library. A list of messages where each message is a dictionary with the following fields: <ul> <li><strong>role</strong>: the role of the speaker, either&nbsp;<code>user</code>&nbsp;or&nbsp;<code>assistant</code></li> <li><strong>content</strong>: the message content. For the assistant, it is the answer to the user's question. For the user, it is the question asked to the assistant.</li> </ul> </li> </ul> <p><strong>Important</strong>&nbsp;See the full list of topics and subtopics covered below.</p> <h3>Metadata</h3> <p>Dataset is version controlled and commits history is available here:&nbsp;<a href="https://huggingface.co/datasets/patrickfleith/Astro-Ultrachat/commits/main" rel="nofollow">https://huggingface.co/datasets/patrickfleith/AstroChat/commits/main</a></p> <h3>Generation Method</h3> <p>We used a method inspired from Ultrachat dataset. Especially, we implemented our own version of Human-Model interaction from&nbsp;<strong>Sector I: Questions about the World</strong>&nbsp;of their paper:</p> <p><em>Ding, N., Chen, Y., Xu, B., Qin, Y., Zheng, Z., Hu, S., ... &amp; Zhou, B. (2023). Enhancing chat language models by scaling high-quality instructional conversations. arXiv preprint arXiv:2305.14233.</em></p> <h4>Step-by-step description</h4> <ul> <li>Defined a set of user persona</li> <li>Defined a set of topics/ disciplines within the domain of Astronautics / Space Mission Engineering</li> <li>For each topics, we defined a set of subtopics to narrow down the conversation to more specific and niche conversations (see below the full list)</li> <li>For each subtopic we generate a set of opening questions that the user could ask to start a conversation (see below the full list)</li> <li>We then distil the knowledge of an strong Chat Model (in our case ChatGPT through then api with&nbsp;<code>gpt-4-turbo</code>&nbsp;model) to generate the answers to the opening questions</li> <li>We simulate follow-up questions from the user to the assistant, and the assistant's answers to these questions which builds up the messages.</li> </ul> <h3>Future work and contributions appreciated</h3> <ul> <li>Distil knowledge from more models (Anthropic, Mixtral, GPT-4o, etc...)</li> <li>Implement more creativity in the opening questions and follow-up questions</li> <li>Filter-out questions and conversations which are too similar</li> <li>Ask topic and subtopic expert to validate the generated conversations to have a sense on how reliable is the overall dataset</li> </ul> <h3>Languages</h3> <p>All instances in the dataset are in english</p> <h3>Size</h3> <p>901 synthetically-generated dialogue</p> <h2>USAGE AND GUIDELINES</h2> <h3>License</h3> <p>AstroChat&nbsp;&copy; 2024 by Patrick Fleith is licensed under Creative Commons Attribution 4.0 International</p> <h4>Restrictions</h4> <p>No restriction. Please provide the correct attribution following the license terms.</p> <h4>Citation</h4> <p><em>Patrick Fleith, AstroChat &ndash; A Dataset of synthetically generated conversations for LLM supervised fine-tuning in the domain of Space Mission Engineering and Astronautics, (2024).</em></p> <h4>Update Frequency</h4> <p>Will be updated based on feedbacks. I am also looking for contributors. Help me create more datasets for Space Engineering LLMs :)</p> <h4>Have a feedback or spot an error?</h4> <p>Use the community discussion tab directly on the huggingface AstroChat dataset page.</p> <h4>Contact Information</h4> <p>Reach me here on the community tab or on LinkedIn (Patrick Fleith) with a Note.</p> <h3>Number of conversation per topic category</h3> <pre><code>Space Propulsion Systems 135 Human Spaceflight 50 Entry Descent and Landing (EDL) 45 Mechanisms 45 Planetary Rovers 45 Attitude Determination and Control 45 Telecommunication 41 Space Business 40 Structures 40 Materials 40 Launchers, Launches, Launch Operations 36 Power System 35 Payload S/S and Optics 35 Reliability, Availability, Maintainability, and Safety (RAMS) 35 Space Missions Operations 31 Space Environment 30 Command and Data System 30 Orbital Mechanics 30 Space Law 26 Ground Systems 25 Thermal Control 25 Space Processes 20 Planetary Science and Exploration 17 </code></pre> <h3>Topics and subtopics covered</h3> <p>topic: [ Space Law ]</p> <p>subtopics:</p> <ul> <li>Space Law Basics</li> <li>1998 ISS agreement</li> <li>Outer Sppace Treaty</li> <li>Geostationary Orbit Regulations</li> <li>Space Traffic Management</li> <li>French Space Law</li> </ul> <p>topic: [ Space Business ]</p> <p>subtopics:</p> <ul> <li>New Space</li> <li>Satellite Insurance</li> <li>Financing Space Project (in EU)</li> <li>Commercial Satellite Launch Services</li> <li>Space Tourism</li> <li>Business Models for Space Stations</li> <li>Public-private Partnerships</li> <li>Economic Impact of Space Technologies</li> </ul> <p>topic: [ Space Missions Operations ]</p> <p>subtopics:</p> <ul> <li>Flight control team</li> <li>Flight Dynamics</li> <li>Procedure Preparation and Validation</li> <li>Mission Planning</li> <li>Extravehicular Activities (EVAs)</li> <li>Collision Avoidance Manoeuvres</li> <li>Mission Termination and De-Orbit Strategies</li> </ul> <p>topic: [ Human Spaceflight ]</p> <p>subtopics:</p> <ul> <li>Astronaut Selection</li> <li>Astronaut Training</li> <li>research experiments onboard of the ISS</li> <li>Human Mission to Mars Design</li> <li>Environmental Control and Life Support Systems</li> <li>Moon Surface Habitats</li> <li>Microgravity effects</li> <li>Space Suit Design and Operation</li> <li>Space Medicine</li> <li>Space Food</li> </ul> <p>topic: [ Space Environment ]</p> <p>subtopics:</p> <ul> <li>Micrometeorites</li> <li>Space Radiation</li> <li>Solar Cycle</li> <li>Spacecraft Hardening</li> <li>Space Environment Effects on Satellites</li> <li>Magneto-sphere and Radiation Belt</li> </ul> <p>topic: [ Space Propulsion Systems ]</p> <p>subtopics:</p> <ul> <li>Liquid Rocket Engines</li> <li>Solid Rocket Motors</li> <li>Hybrid Rocket Engines</li> <li>Staging and Ignition Systems</li> <li>Propellant Feed Systems</li> <li>Nozzle Designs</li> <li>Thermodynamics</li> <li>Turbopumps and/or Combustion Chambers</li> <li>Specific Impulse and Thrust-to-Weight Ratios</li> <li>Chemical Monopropellant Technologies</li> <li>Chemical Bipropellant Systems</li> <li>Nuclear Thermal Propulsion</li> <li>Fuel Handling and Storage</li> <li>Nuclear Propulsion Thermal Neutron Absorbers</li> <li>Nuclear Propulsion Heat Exchangers</li> <li>Green Propellants</li> <li>Bipropellant Injector Design</li> <li>Electric Ion Thrusters</li> <li>Hall Effect Thrusters</li> <li>Electrothermal Thrusters</li> <li>Grid and Cathode Technologies</li> <li>Aerospike Engines</li> <li>Variable Specific Impulse Magnetoplasma Rocket (VASIMR)</li> <li>Bipropellant Mixing Ratios and Combustion</li> <li>Cryogenic Propellant Handling</li> <li>Oxydizer and Fuel Combinations</li> <li>Long-term Impacts of Propellant Residues in the Atmosphere</li> <li>Propellant Tank Pressurization</li> </ul> <p>topic: [ Space Processes ]</p> <p>subtopics:</p> <ul> <li>Trade Studies</li> <li>Margins, Coningencies, Reserves</li> <li>Systems Engineering</li> <li>Quality Assurance</li> </ul> <p>topic: [ Ground Systems ]</p> <p>subtopics:</p> <ul> <li>Ground Stations</li> <li>Ground Support Equipments</li> <li>Control Centers</li> <li>Tracking Systems</li> <li>AntennasGround Systems Engineering</li> </ul> <p>topic: [ Planetary Rovers ]</p> <p>subtopics:</p> <ul> <li>Mars Rovers</li> <li>Lunar Rovers</li> <li>Rover Instrumentation</li> <li>Rover Power Systems</li> <li>Rover Thermal Control</li> <li>Rover Autonomy</li> <li>Wheels Design</li> <li>Legged Rovers</li> <li>Hazard Avoidance</li> </ul> <p>topic: [ Planetary Science and Exploration ]</p> <p>subtopics:</p> <ul> <li>Astrobiology</li> <li>Exoplanets</li> <li>AsteroidsJupiter</li> <li>Saturn</li> <li>Search for Extraterrestrial Life</li> </ul> <p>topic: [ Structures ]</p> <p>subtopics:</p> <ul> <li>Structural Design and Analysis</li> <li>Load Path Determination</li> <li>Vibration and Acoustic Testing</li> <li>Thermal Protection Systems</li> <li>Composite Structures</li> <li>Joining Techniques (e.g., Welding, Bolting, Bonding)</li> <li>Manufacturing Tolerances and Quality Control</li> <li>Deployable Structures (e.g., Antennas, Solar Arrays)</li> </ul> <p>topic: [ Mechanisms ]</p> <p>subtopics:</p> <ul> <li>Actuators and Dampers</li> <li>Gimbals and Bearings</li> <li>Latch and Release Devices</li> <li>Hinges and Deployment Systems</li> <li>Robotic Arms and Tools</li> <li>Valves and Fluid Control Systems</li> <li>Thermal Expansion Joints</li> <li>Drive Systems and Motors</li> <li>Reliability and Lifetime Analysis</li> </ul> <p>topic: [ Materials ]</p> <p>subtopics:</p> <ul> <li>Composite Materials</li> <li>Metals and Alloys</li> <li>Polymers and Plastics</li> <li>Nano-materials</li> <li>Radiation Shielding Materials</li> <li>Thermal Insulation Materials</li> <li>Corrosion and Oxidation Resistance</li> <li>Material Testing and Characterization</li> </ul> <p>topic: [ Entry Descent and Landing (EDL) ]</p> <p>subtopics:</p> <ul> <li>Aerodynamics and Aeroheating</li> <li>Powered Descent</li> <li>Landing Gear and Systems</li> <li>Heat Shield Design and Materials</li> <li>Hazard Avoidance</li> <li>Surface Interaction (Airbags, Crushable Structures)</li> <li>Entry, Descent, and Landing Sequencing</li> <li>EDL on Mars</li> <li>Parachute Systems Design</li> </ul> <p>topic: [ Reliability, Availability, Maintainability, and Safety (RAMS) ]</p> <p>subtopics:</p> <ul> <li>System Reliability Modeling</li> <li>Failure Modes, Effects, and Criticality Analysis (FMECA)</li> <li>Risk Assessment and Management</li> <li>Safety-Critical Systems Design</li> <li>Availability Modeling and Prediction</li> <li>Lifecycle Cost and Duration Analysis</li> <li>Hazardous Material Handling</li> </ul> <p>topic: [ Orbital Mechanics ]</p> <p>subtopics:</p> <ul> <li>Interplanetary Trajectories</li> <li>Gravity Assist Maneuvers</li> <li>Orbit Determination and Propagation</li> <li>Space Situational Awareness and Debris Tracking</li> <li>Mission Design and Analysis Tools</li> <li>Orbit Decay and Re-entry Predictions</li> </ul> <p>topic: [ Launchers, Launches, Launch Operations ]</p> <p>subtopics:</p> <ul> <li>Launcher Types (e.g., expendable, reusable)</li> <li>Launch Vehicles</li> <li>Launch Sites and Infrastructure</li> <li>Countdown Procedures and Sequencing</li> <li>Launch Window Determination and Trajectory Analysis</li> <li>Ground and Launch Crew Training</li> <li>Payload Integration and Fairing Design</li> <li>Environmental and Weather Constraints</li> </ul> <p>topic: [ Attitude Determination and Control ]</p> <p>subtopics:</p> <ul> <li>Sensors for Attitude Determination (e.g., Gyroscopes, Star Trackers)</li> <li>Actuators for Attitude Control (e.g., Reaction Wheels, Thrusters)</li> <li>Control Algorithms (e.g., PID, Kalman Filter)</li> <li>Momentum Exchange Devices</li> <li>Attitude Dynamics Modeling</li> <li>On-Orbit Attitude Reconfiguration</li> <li>Fault Detection and Response Strategies</li> <li>Sun and Earth Sensors</li> <li>Magnetic Torquers and Gravity Gradient Stabilization</li> </ul> <p>topic: [ Payload S/S and Optics ]</p> <p>subtopics:</p> <ul> <li>Payload Design and Integration</li> <li>Spectral Imaging and Multi-spectral Sensors</li> <li>Infrared and Ultraviolet Optics</li> <li>Calibration and Validation of Optical Systems</li> <li>Image Processing and Data Analysis</li> <li>Thermal Control for Sensitive Optics</li> <li>Data Downlink and Communication Interfaces</li> </ul> <p>topic: [ Power System ]</p> <p>subtopics:</p> <ul> <li>Solar Panels and Arrays</li> <li>Battery Types and Management Systems (e.g., Li-ion, NiMH)</li> <li>Energy Storage Technologies</li> <li>Fault Protection and Isolation</li> <li>Harness and Cabling</li> <li>Alternative Power Sources (e.g., RTGs, Fuel Cells)</li> <li>Power Budgeting and Load Analysis</li> </ul> <p>topic: [ Thermal Control ]</p> <p>subtopics:</p> <ul> <li>Active Thermal Control Systems (e.g., Heat Pumps, Louvers)</li> <li>Environmental Testing and Validation</li> <li>Heating and Cooling Hardware</li> <li>Thermal Protection for Entry, Descent, and Landing</li> <li>Cryogenic Thermal Management</li> </ul> <p>topic: [ Command and Data System ]</p> <p>subtopics:</p> <ul> <li>Onboard Computers and Processing Units</li> <li>Software Architecture and Middleware</li> <li>Command Link and Telemetry Systems</li> <li>Interface and Bus Systems (e.g., MIL-STD-1553, SpaceWire)</li> <li>Real-Time Operating Systems (RTOS)</li> <li>Security Measures and Encryption</li> </ul> <p>topic: [ Telecommunication ]</p> <p>subtopics:</p> <ul> <li>Antenna Systems (e.g., Parabolic, Phased Array)</li> <li>Communication Transponders</li> <li>Frequency Bands and Spectrum Management</li> <li>Signal Modulation and Demodulation Techniques</li> <li>Inter-Satellite Links and Data Relays</li> <li>Error Detection and Correction</li> <li>Space Communication Protocols</li> <li>RF and Microwave Components</li> <li>Deep Space Communications</li> </ul>

opencc-by-4.0Jun 2024View details →
zenodo44/100

A Reproducible Analysis of RSSI Fingerprinting for Outdoors Localization Using Sigfox: Preprocessing and Hyperparameter Tuning (datasets)

<p>The train/validation/test sets used in the study &quot;<strong>A Reproducible Analysis of RSSI Fingerprinting for Outdoors Localization Using Sigfox: Preprocessing and Hyperparameter Tuning</strong>&quot;.</p> <p>Preprint:<a href="https://arxiv.org/abs/1908.06851"> https://arxiv.org/abs/1908.06851</a></p> <p>Published paper: <a href="https://ieeexplore.ieee.org/document/8911792">https://ieeexplore.ieee.org/document/8911792</a></p> <p>&nbsp;</p> <p>The dataset used to&nbsp;create these sets was published in:</p> <p><a href="http://www.mdpi.com/2306-5729/3/2/13">http://www.mdpi.com/2306-5729/3/2/13</a></p> <p>The full dataset is available here:</p> <pre><a href="https://doi.org/10.5281/zenodo.1212478">https://doi.org/10.5281/zenodo.1212478</a> </pre> <p>The credit for the creation of the dataset goes to&nbsp;Aernouts, Michiel;&nbsp; Berkvens, Rafael;&nbsp;Van Vlaenderen, Koen;&nbsp;and&nbsp; Weyn, Maarten.</p> <p>&nbsp;</p>

opencc-by-4.0May 2019View details →
zenodo44/100

Irish Traditional Music Tune Types Thesaurus

<p>A Simple Knowledge Organisation System (SKOS) Thesaurus. Incorporates dance tunes and other tune types found in contemporary Irish traditional music. Developed for use at the Irish Traditional Music Archive. Contains Irish language and English terms.</p>

opencc-by-4.0Jun 2019View details →
zenodo44/100

The complex non-collinear magnetic orderings in Ba2YOsO6: A new approach to tuning spin-lattice interactions and controlling magnetic orderings in frustrated complex oxides

<p><strong>Project abstract</strong>: Frustrated magnets are one class of fascinating materials that host many intriguing phases such as spin ice, spin liquid and complex long-range magnetic orderings at low temperatures. In this work we use first-principles calculations to find that in a wide range of magnetically frustrated oxides, at zero temperature a number of non-collinear magnetic orderings are more stable than the type-I collinear ordering that is observed at finite temperatures. The emergence of non-collinear orderings in those complex oxides is due to higher-order exchange interactions that originate from second-row and third-row transition metal elements. This implies a collinear-to-noncollinear spin transition at sufficiently low temperatures in those frustrated complex oxides. Furthermore, we find that in a particular oxide Ba2YOsO6, experimentally feasible uniaxial strain can tune the material between two different non-collinear magnetic orderings. Our work predicts new non- collinear magnetic orderings in frustrated complex oxides at very low temperatures and provides a mechanical route to tuning complex non-collinear magnetic orderings in those materials.&nbsp;<br> <br> <strong>About this entry</strong>: We provide the input files of our DFT calculations for the studied complex oxides. The structures in POSCAR format and the INCAR files for all stabilized magnetic orderings in our study are all included. These files can be directly used into DFT calculations with VASP. Only the versions&nbsp;of PAW potentials are included in POT.info files owing to the VASP license restrictions.</p>

opencc-by-4.0Dec 2018View details →
zenodo44/100

Compartment and Hub Definitions Tune Metabolic Networks for Metabolomic Interpretations

<p>This archive contains data for a report by the same title.<br> Data relate to software projects MetaboNet and DyMetaboNet.<br> MetaboNet: https://github.com/tcameronwaller/metabonet<br> DyMetaboNet: https://github.com/tcameronwaller/dymetabonet</p> <p>File descriptions</p> <p>dymetabonet_2019-08-29.mp4 ... raw screen capture video of DyMetaboNet<br> dock_metabonet_2019-08-18.zip ... complete MetaboNet export<br> model_* ... curation of human metabolic model by MetaboNet<br> model_dymetabonet.zip ... format for DyMetaboNet<br> model_compartments* ... compartments<br> model_processes* ... processes<br> model_reactions* ... reactions<br> model_metabolites* ... metabolites<br> measurement_* ... curation of metabolomic measurements by MetaboNet<br> measurement_study_*_report.tsv ... summary of match measurements to metabolites<br> measurement_study_*.tsv ... metabolites&#39; fold changes and probabilities between groups<br> measurement_study_*_metaboanalyst.txt ... format for MetaboAnalyst<br> measurement_study_*_metaboanalyst_pair.txt ... format for MetaboAnalyst with sample pairs<br> network_* ... multiple definitions of metabolic networks<br> network_compartments-true_hubs-true.zip ... compartmental network with hubs<br> network_compartments-true_hubs-false.zip ... compartmental network without hubs<br> network_compartments-false_hubs-true.zip ... noncompartmental network with hubs<br> network_compartments-false_hubs-false.zip ... noncompartmental network without hubs<br> network_compartments-*_hubs_*/network_cytoscape.json ... format for Cytoscape<br> network_compartments-*_hubs_*/network_networkx.pickle ... format for NetworkX<br> network_compartments-*_hubs_*/nodes_reactions.pickle ... network&#39;s nodes for reactions<br> network_compartments-*_hubs_*/nodes_metabolites.pickle ... network&#39;s nodes for metabolites<br> network_compartments-*_hubs_*/links.pickle ... network&#39;s links<br> network_compartments-*_hubs_*/analysis/nodes_reactions.tsv ... nodes&#39; metrics relative to reactions<br> network_compartments-*_hubs_*/analysis/nodes_metabolites.tsv ... nodes&#39; metrics relative to metabolites<br> network_compartments-*_hubs_*/analysis/network_reactions.tsv ... network&#39;s metrics relative to reactions<br> network_compartments-*_hubs_*/analysis/network_metabolites.tsv ... network&#39;s metrics relative to metabolites<br> network_compartments-*_hubs_*/measurement/metabolites.tsv ... measurements on nodes for metabolites</p>

opencc-by-4.0Aug 2019View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record