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datasets available to search
ShareScore release 0.9.0
Dataset results
2 results for “Urochordates”
Raw numerical data and cleavage assay blot for Figures found in the article: "The ion channel Anoctamin 10/TMEM16K coordinates organ morphogenesis across scales in the urochordate notochord"
<p><span>In relation to our publication: "The ion channel Anoctamin 10/TMEM16K coordinates organ morphogenesis across scales in the urochordate notochord" we provide all the individual quantitative observations that underlie the data summarized in the figures and results of our paper. More specifically we provide the data for <span><span>Fig. 1G, H, I, P, Q; Fig. 2D-G, R-U; Fig. 3E-H; Fig. 4D-F, Q-S; Fig. 5D-G, K-N; R-U; Fig. 6D-F, S-U; Fig. 7G, H, J-T; Fig. 8G-I, M, N, S, X, Y; Fig. 9D-G, R, S; Fig. 10D-Q, K-R; Fig. 11F, G; Fig. S2T-X; Fig. S3G; Fig. S4K, O, P and Fig. S6E-J</span></span></span>.</p> <p>In addition we provide a non-annotated and an annotated version of the original, uncropped gel picture shown in Fig. S4A</p>
Dataset associated with "Quantitative analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis."
<p>This dataset contains the data used in the publication “Quantitative analysis reveals the basic behavioural repertoire of the early branching chordate Ciona intestinalis.”. It is available in .hdf format which can be opened with the pandas library in python.</p> <p>The dataframe is structured as one row of descriptive parameters per tracked trace, but one entry in the row is an entire dataframe containing all data for observations per tracked point for the respective trace. </p> <p>Parameter descriptions:</p> <p>chor: Wether an animal is with chorion ("C") or dechorionated ("D")<br> age: Age of animal expressed in hours post hatching<br> video: Name of video file associated with trace<br> light: Which light stimulus was used.<br> fps: framerate of video<br> temp: temperature the experiment was performed at<br> crowdsize: number of animals in well<br> modafinil: concentration of modafinil used<br> lazy: boolean. True if an animal did not move more than a threshold value. Lazy/Dead/Immobile/Stuck animals were discarded from analysis.<br> tto: Thigmotaxis defined in percentage of time spent in thigmotactic area.<br> tdo: Thigmotaxis defined in percentage of distance covered in thigmotactic area.<br> ac: activity coeffiecient. Fraction of video where the animal had a speed of a threshold or higher.<br> complexity: Path complexity expressed in bits of entropy<br> dfs: Dataframes decribing the trace coordinate by coordinate.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.