Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
95
datasets available to search
ShareScore release 0.7.1
Dataset results
95 results for “Vibrio cholerae”
Vibrio cholerae codon biased genes list
<p>Files called top25: For each codon, 25% of genes with highest differential codon usage are listed. </p> <p>Files called top: For each codon, top genes with highest differential codon usage are listed, as indicated by violin plots in pdf files. </p> <p>Excel sheet with assigned codon usage for each codon and each gene.</p> <p>Whole genome of Vibrio cholerae N16961</p>
Fig. 4 in Bactericidal properties of mangrove Bruguiera cylindrica (L.) Blume leaf and Rhizophora mucronata Poir. stilt root extracts on Vibrio cholera, MTCC 435 and Escherichia coli pathogens
Fig. 4 — Percentage viability of HeLa cells with different mangrove extracts. Values are mean of triplicate reading (mean±SD)
Fig. 3 in Bactericidal properties of mangrove Bruguiera cylindrica (L.) Blume leaf and Rhizophora mucronata Poir. stilt root extracts on Vibrio cholera, MTCC 435 and Escherichia coli pathogens
Fig. 3 — SEM images of mangrove extracts with treated and un-treated bacterial cells: (a) Un-treated; (b) MTCC 435 treated with R. mucronata acetone stilt root extract; (c) MTCC 435 treated with B. cylindrica acetone leaf extract; (d) Un-treated Escherichia coli; (e) Escherichia coli treated with R. mucronata acetone stilt root extract; (f) Escherichia coli treated with B. cylindrica ethyl acetate leaf extract; (g) Un-treated Vibrio cholera; and (h) Vibrio cholerae treated with R. mucronata acetone stilt root extract
Fig. 2 in Bactericidal properties of mangrove Bruguiera cylindrica (L.) Blume leaf and Rhizophora mucronata Poir. stilt root extracts on Vibrio cholera, MTCC 435 and Escherichia coli pathogens
Fig. 2 — Viable count analysis of the bacterial pathogens - I: Collected solvent extract; II: Control plates [a) MTCC 435, g) E. coli, m) V. cholerae; b, h & n: Tetracycline (40 µg.ml-1) treated plates - (b) MTCC 435, h) E. coli, and n) V. cholerae); c, e, i, k & o: X- MBC concentration treated plates - (c) MTCC 435 with R. mucronata acetone stilt root extract, e) MTCC 435 with B. cylindrica acetone leaf extract, i) E. coli with R. mucronata acetone stilt root extract, k) E. coli with B. cylindrica acetone leaf extract, and o) V. cholerae with B. cylindrica ethyl acetate leaf extract); d, f, j, l & p: 2X-MBC concentration treated plates - (d) MTCC 435 with R. mucronata acetone stilt root extract, f) MTCC 435 with B. cylindrica acetone leaf extract, j) E. coli with R. mucronata acetone stilt root extract, l) E. coli with B. cylindrica acetone leaf extract, and p) V. cholerae with B. cylindrica ethyl acetate leaf extract)]
Fig. 1 in Bactericidal properties of mangrove Bruguiera cylindrica (L.) Blume leaf and Rhizophora mucronata Poir. stilt root extracts on Vibrio cholera, MTCC 435 and Escherichia coli pathogens
Fig. 1 — Effect of various extracts on growth pattern of clinical pathogens: a) R. mucronata acetone stilt root extract with MTCC 435; b) B. cylindrica acetone leaf extract with MTCC 435; c) R. mucronata acetone stilt root extract with E. coli; d) B. cylindrica acetone leaf extract with E. coli; and e) B. cylindrica ethyl acetate leaf extract with V. cholera
Data on the occurrence of Vibrio spp. of public health importance (i.e. Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae non-O1/non-O139) in seafood in European countries (Jan 2010-Sept 2023)
<p><span>This file contains data on the occurrence of <em><span>Vibrio</span></em><span> spp. of public health importance (<em>i.e</em>. <em>Vibrio parahaemolyticus</em>, <em>Vibrio vulnificus,</em> and <em>Vibrio cholerae </em>non-O1/non-O139) in seafood produced and/or commercialized in Europe, </span>covering studies published between January 2010 and September 2023. </span><span>The systematic review protocol used to identify and extract the information is available at <a href="../doi/10.5281/zenodo.10282513"><span>https://zenodo.org/doi/10.5281/zenodo.10282513</span></a> .</span></p>
Single cell annotations in 3D bacterial biofilms of Vibrio cholerae
<p>This repository contains the data to reproduce the study `Single-cell segmentation in bacterial biofilms with optimized convolutional neural networks enables tracking of cell lineages and measurements of growth rates` by Jelli, Ohmura, Netter, et al. It contains the following four subfolders:</p> <p> </p> <p>- `training-data-from-experimentally-acquired-images`: the dataset that was created to train segmentation models<br> - `trained-models`: contains five models trained on the trainind dataset to be used for predictions<br> - `segmentation-predictions-for-different-species`: segmentations based on a trained model on biofilms of different species<br> - `training-data-synthetic`: Synthetic microscope images and their corresponding label images together with scripts to create the data</p>
Data for: Constitutive expression of the Type VI secretion system carries no measurable fitness cost in Vibrio cholerae
Open the record for dataset details and reuse information.
Global Vibrio Cholerae O1 dataset
<p>This repository contains six files. Files with the n4196 file notation pertain the full core genome alignment, while the n100 FASTA file can be used for testing purposes. The files (.csv and .tsv) conains metadata of the sequences in the FASTA and tree files. Both core genome alignments (FASTA files) contain sequence outputs from SNIPPY and has not been processed through the clustering or masking steps in CholeraSeq. </p>
Supplementary Figures -B Cell Epitopes Mapping of the Vibrio cholera Toxins A, B, and P and an ELISA assay
<p>Figure S1- List of <em>Vibrio cholerae</em> [toxin A (P01555), B (P01556), and P (P29485)] synthetic peptides and position in the cellulose membrane of Spot synthesis.</p> <p>Figure S2- Purification of the peptide B (Vc/TxB-11) by HPLC using an XBridge BEH C18 (2.7 μ, 5 cm x 4.6 mm) column coupled to a Water HPLC system at a flow rate of 1.2 ml min<sup>-1 </sup>using mobile phases A [0.05% formic acid in water (18 MΩ × cm)] and B [(0.05% formic acid in ACN (acetonitrile acid)] (v/v) in water. Detection at 200-300 nm using a diode array.</p> <p>Figure S3- Mass spectrometry. The peptide B (Vc/TxB-11) was solubilized in deionized water to a final concentration of 10 µg/ml and then added formic acid to a final concentration of 0.1%. The mass spectrometer used was the Water UPLC model Acquity-I Class. The samples were electronically injected by the equipment at 1 µl/min. The range used for ion detection ranged from 1000-11500 m/z.</p>
Epidemiology Non-cholera Vibrio Infections
ClinicalTrials.gov study NCT04451707. IPD Sharing: YES. Countries: 1. Publications: 5.
Peptide-based ligand antagonists block a <em>Vibrio cholerae</em> adhesin
Open the record for dataset details and reuse information.
Uncropped gel—nuclease data from: A nicking class 1 OLD family nuclease encoded by <em>Vibrio cholerae</em> inhibits virbiophage replication and is countered by a direct inhibitor
Open the record for dataset details and reuse information.
Confocal microscopy images for: Surface remodeling and inversion of cell-matrix interactions underlie community recognition and dispersal in Vibrio cholerae biofilms
Open the record for dataset details and reuse information.
Data from: Quorum-sensing signaling by chironomid egg masses' microbiota affects haemagglutinin/protease (HAP) production by Vibrio cholerae
<p><i>Vibrio cholerae</i>, the causative agent of cholera, is commonly isolated, along with other bacterial species, from chironomid insects (<i>Diptera: Chironomide</i>). Nevertheless, its prevalence in the chironomid egg masses' microbiota is less than 0.5%. <i>V. cholerae</i> secretes haemagglutinin/protease (HAP) that degrades the gelatinous matrix of chironomid egg masses and prevents hatching. Quorum sensing (QS) activates HAP production in response to accumulation of bacterial autoinducers (AIs). Our aim was to define the impact of chironomid microbiota on HAP production by <i>V. cholerae</i>. To study QS signaling, we used<i> V. cholerae</i> bioluminescence reporter strains (QS-proficient O1 El-Tor wild type and QS-deficient mutants) and different bacterial species that we isolated from chironomid egg masses. These egg mass isolates, as well as a synthetic AI-2, caused an enhancement in <i>lux</i> expression by a <i>V. cholerae</i> QS-deficient mutant. The addition of the egg mass bacterial isolate supernatant to the QS-deficient mutant also enhanced HAP production and egg mass degradation activities. Moreover, the <i>V. cholerae</i> wild type strain was able to proliferate using egg masses as their sole carbon source while the QS-deficient was not. The results demonstrate that members of the chironomid bacterial consortium produce external chemical cues that, like AI-2, induce expression of the<i> hapA </i>gene in <i>V. cholerae</i>. Understanding the interactions between <i>V. cholerae</i> and the insects' microbiota may help uncover the interactions between this pathogen and the human gut microbiota.</p>
Data from: Cholera outbreaks (2012) in three districts of Nepal reveal clonal transmission of multi-drug resistant Vibrio cholerae O1
Open the record for dataset details and reuse information.
Data from: Quorum-sensing signaling by chironomid egg masses’ microbiota affects haemagglutinin/protease (HAP) production by Vibrio cholerae
Open the record for dataset details and reuse information.
Chitoporin from Vibrio cholerae O1: single-channel properties, sugar specificity and role in adaptive survival of the bacteria
<p>Mass identification data for VcChiP from Vibrio cholerae. The data are included in the article under consideration for publication in JBC (Reference number JBC/2020/012921R1).</p>
Vibrio cholerae O395 toxSL33S vs toxSL33S delta rpoE
GEO Series GSE72378. Vibrio cholerae; Vibrio cholerae O395. 4 samples. Type: Expression profiling by array.
The QstR regulon of Vibrio cholerae
GEO Series GSE114592. Vibrio cholerae. 24 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.