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2 results for “WGS pipeline”
WGS pipeline supporting files
<p>These are supporting files used for our WGS analysis pipeline described in <a href="https://github.com/edg1983/WGS_pipeline">https://github.com/edg1983/WGS_pipeline</a></p> <p>Somalier files are derived from <a href="https://github.com/brentp/somalier">https://github.com/brentp/somalier</a></p> <p>Expansion Hunter files represent the variants catalog from Expansion Hunter v5.0.0 (<a href="https://github.com/Illumina/ExpansionHunter">https://github.com/Illumina/ExpansionHunter</a>)</p>
Performance and agreement between WGS variant calling pipelines used for bovine tuberculosis control: towards international standardisation
<p>This repository contains the simulated genomes and FASTQ files used for the analyses reported in the publication: <strong>Performance and agreement between WGS variant calling pipelines used for bovine tuberculosis control: towards international standardisation</strong>.</p> <p>This dataset is based on previously published data: <a href="https://doi.org/10.1099/mgen.0.000388">https://doi.org/10.1099/mgen.0.000388</a></p> <p>Processing scripts can be found in: <a href="https://github.com/Viloleal/bTB-pipeline-comparison-data-and-tools">https://github.com/Viloleal/bTB-pipeline-comparison-data-and-tools</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.