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7 results for “Xanthomonas oryzae pv. oryzicola”
Genome assemblies of Xanthomonas oryzae pv. oryzae (PXO35, FXO38, Huang604) and Xanthomonas oryzae pv. oryzicola (BAI35, MAI23)
<p>Genome assemblies of <em>Xanthomonas oryzae</em> pv. <em>oryzae</em> (<em>Xoo</em>) and <em>Xanthomonas oryzae</em> pv. <em>oryzicola</em> (<em>Xoc</em>). Genome assemblies of the <em>Xoo</em> strains PXO35, FXO38, Huang604 and the <em>Xoc</em> strains BAI35, MAI23, have been generated with Flye based on ONT reads. For each of these strains, we corrected the sequences encoding for transcription activator-like effectors (TALEs) with our TALE-correction pipeline (https://github.com/Jstacs/Jstacs/tree/master/projects/talecorrect). For Xoo PXO35, we additionally provide assemblies based on reads obtained from different sequencing methods (Illumina, PacBio, ONT) generated by a collection of (hybrid) assembly strategies and different polishing approaches applied to combinations of these.</p>
Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high cop
GEO Series GSE67958. Oryza sativa Japonica Group. 6 samples. Type: Expression profiling by high throughput sequencing.
Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice
GEO Series GSE126994. Oryza sativa; Xanthomonas oryzae pv. oryzicola. 5 samples. Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Transcriptome Profiling of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola
GEO Series GSE9658. Xanthomonas oryzae pv. oryzae KACC 10331; Xanthomonas oryzae pv. oryzicola BLS256. 48 samples. Type: Expression profiling by array.
Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas oryzae pv. oryzicola
GEO Series GSE19239. Oryza sativa. 12 samples. Type: Expression profiling by array.
Transcriptome Profiling of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola on two different medias
GEO Series GSE9640. Xanthomonas oryzae pv. oryzicola BLS256; Xanthomonas oryzae pv. oryzae KACC 10331. 12 samples. Type: Expression profiling by array.
Xanthomonas oryzae pv. oryzicola (Indian Isolate) wild type and complented strains vs rpfF mutant grown under iron starved condition
GEO Series GSE53255. Xanthomonas oryzae pv. oryzicola. 8 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.