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Dataset results
20 results for “accurate profiling”
Literature Curated PPIs from "Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay"
<p>This dataset includes the literature curated protein-protein interactions supporting the manuscript titled 'Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay'.</p>
Raw NanoLuc and NanoBiT Data from "Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay"
<p>This dataset includes raw NanoLuc and NanoBiT data supporting the manuscript titled 'Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay'.</p>
Analyzed NanoBiT Data from "Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay"
<p>This dataset includes analyzed NanoBiT data supporting the manuscript titled 'Accurate and Sensitive Interactome Profiling Using a Quantitative Protein-Fragment Complementation Assay'.</p>
RF Coil Design for Accurate Parallel Imaging on 13C MRSI using 23Na Sensitivity Profiles
<p>This upload contains data for the article "RF Coil Design for Accurate Parallel Imaging on 13C MRSI using 23Na Sensitivity Profiles" published in Magnetic Resonance in Medicine, https://doi.org/10.1002/mrm.29259.</p> <p>Data are organized with respect to the figures in the article. To read and process the GE MR raw files (p-files) GE software tools are required including Matlab software from the GE MNS Research Pack. For the human data, the raw data are provided in mat-files without header information.</p> <p>All data were processed in Matlab to produce the results presented in the article. Please do not hesitate to reach out, if you are interested in any data processing methods or details, we will be happy to share relevant source code.</p>
Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads
<p>Data consists of raw Illumina MiSeq 2x250bp reads from the Fab mini library Mix9A, and Illumina MiSeq 2x300bp reads from the Fab mini library Mix14 at 8 attomole as described in the journal publication "Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads".</p>
Dataset for "An innovative pure rotational Raman lidar for accurately profiling atmospheric temperature and aerosol/cloud backscatter coefficients"
<p>This is the dataset used in the paper "<span>An innovative pure rotational Raman lidar for accurately profiling atmospheric temperature and aerosol/cloud backscatter coefficients"</span></p>
Data from: Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation
Proteins have distinct structural and functional constraints at different sites that lead to site-specific preferences for particular amino acid residues as the sequences evolve. Heterogeneity in the amino acid substitution process between sites is not modeled by commonly used empirical amino acid exchange matrices. Such model misspecification can lead to artefacts in phylogenetic estimation such as long-branch attraction. Although sophisticated site-heterogeneous mixture models have been developed to address this problem in both Bayesian and maximum likelihood (ML) frameworks, their formidable computational time and memory usage severely limits their use in large phylogenomic analyses. Here we propose a posterior mean site frequency (PMSF) method as a rapid and efficient approximation to full empirical profile mixture models for ML analysis. The PMSF approach assigns a conditional mean amino acid frequency profile to each site calculated based on a mixture model fitted to the data using a preliminary guide tree. These PMSF profiles can then be used for in-depth tree-searching in place of the full mixture model. Compared with widely used empirical mixture models with k classes, our implementation of PMSF in IQ-TREE (http://www.iqtree.org) speeds up the computation by approximately k /1.5-fold and requires a small fraction of the RAM. Furthermore, this speedup allows, for the first time, full nonparametric bootstrap analyses to be conducted under complex site-heterogeneous models on large concatenated data matrices. Our simulations and empirical data analyses demonstrate that PMSF can effectively ameliorate long-branch attraction artefacts. In some empirical and simulation settings PMSF provided more accurate estimates of phylogenies than the mixture models from which they derive.
Data from: Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation
Open the record for dataset details and reuse information.
SPAAC-NAD-seq, a sensitive and accurate method to profile NAD+-capped transcripts
GEO Series GSE162114. Arabidopsis thaliana. 15 samples. Type: Expression profiling by high throughput sequencing.
Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples (training
GEO Series GSE34577. Homo sapiens. 89 samples. Type: Expression profiling by array.
Shrinking the Psoriasis assessment gap: Early gene-expression profiling accurately predicts response to long-term treatment
GEO Series GSE85034. Homo sapiens. 179 samples. Type: Expression profiling by array.
Genome-wide Profiles of DNA Damage Represent Highly Accurate Predictors of Chronological Age
GEO Series GSE239751. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing; Other.
NADcapPro Seq and CircNAD –Methods for Accurate Profiling of NAD and Non-Canonical RNA Caps in Eukaryotes
GEO Series GSE217259. Saccharomyces cerevisiae. 20 samples. Type: Expression profiling by high throughput sequencing.
Structure-seq2: Sensitive and accurate genome-wide profiling of RNA structure in vivo
GEO Series GSE95514. Oryza sativa Japonica Group. 27 samples. Type: Expression profiling by high throughput sequencing; Other.
Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples
GEO Series GSE34823. Homo sapiens. 206 samples. Type: Expression profiling by array.
Method for accurate epigenome profiling using a few hundred cells and its applications
GEO Series GSE70832. Mus musculus. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Accurate and precise transcriptional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes
GEO Series GSE5130. Mus musculus. 103 samples. Type: Expression profiling by array.
Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples. (test sa
GEO Series GSE34714. Homo sapiens. 117 samples. Type: Expression profiling by array.
Keloid-specific gene expression profiling for accurate diagnostic and therapeutic applications.
GEO Series GSE188952. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads
<p>Data consists of raw Illumina MiSeq 2x250bp reads from the Fab mini library mix as described in the journal publication "Accurate profiling of full length Fv in highly homologous antibody libraries using UMI tagged short reads".</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.