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27 results for “alternative phenotypes”
Data and R script for Neville, Andrews, Nettle and Bateson, 'Dissociating the effects of alternative early-life feeding schedules on the development of adult depression-like phenotypes'
<p>The R script and raw data files for the paper 'Dissociating the effects of alternative early-life feeding schedules on the development of adult depression-like phenotypes', by Vikki Neville, Clare Andrews, Daniel Nettle and Melissa Bateson.</p>
Data from: Mate availability determines use of alternative reproductive phenotypes in hermaphrodites
<p>In many species individuals can employ alternative reproductive phenotypes, with profound consequences for individual fitness and population dynamics. This is particularly relevant for self-compatible hermaphrodites, which have exceptionally many reproductive options. Here we investigated the occurrence of reproductive phenotypes in the simultaneously hermaphroditic freshwater snail <i>Radix balthica</i> under experimentally simulated conditions of low vs. moderate population density. We captured all mating behavior on camera and measured individual female lifetime reproductive success. We found every possible reproductive phenotype: (1) both male and female (i.e. truly hermaphroditic) reproduction, (2) purely female and (3) purely male reproduction, (4) male reproduction combined with self-fertilization and (5) female mating activity, (6) pure self‑fertilization without mating and (7-8) two types of reproductive failure. Variation in alternative reproductive phenotypes was explained by mate availability (10.8%) and individual condition, approximated by a snail's mean daily growth rate (17.5%). Increased mate availability resulted in a lower diversity of reproductive phenotypes, in particular increasing the frequency of true hermaphrodites. However, it lowered phenotype-specific fecundities and hence reduced the population growth rate. Snails in better condition were more likely to reproduce as true hermaphrodites or pure females, while low-condition snails tended to suffer reproductive failure. Overall, we show substantial variation in alternative reproductive phenotypes in a hermaphrodite, which is possibly in part maintained by fluctuations in population density and thus mate availability, and by variation in individual condition. We also provide evidence of an almost two-fold increase in clutch size that can be ascribed specifically to mating as a female.</p>
Data from: Mate availability determines use of alternative reproductive phenotypes in hermaphrodites
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Data from: Phenotypic and genomic plasticity of alternative male reproductive tactics in sailfin mollies
A major goal of modern evolutionary biology is to understand the causes and consequences of phenotypic plasticity, the ability of a single genotype to produce multiple phenotypes in response to variable environments. While ecological and quantitative genetic studies have evaluated models of the evolution of adaptive plasticity, some long-standing questions about plasticity require more mechanistic approaches. Here, we address two of those questions: does plasticity facilitate adaptive evolution? And do physiological costs place limits on plasticity? We examine these questions by comparing genetically and plastically regulated behavioural variation in sailfin mollies (Poecilia latipinna), which exhibit striking variation in plasticity for male mating behaviour. In this species, some genotypes respond plastically to a change in the social environment by switching between primarily courting and primarily sneaking behaviour. In contrast, other genotypes have fixed mating strategies (either courting or sneaking) and do not display plasticity. We found that genetic and plastic variation in behaviour were accompanied by partially, but not completely overlapping changes in brain gene expression, in partial support of models that predict that plasticity can facilitate adaptive evolution. We also found that behavioural plasticity was accompanied by broader and more robust changes in brain gene expression, suggesting a substantial physiological cost to plasticity. We also observed that sneaking behaviour, but not courting, was associated with upregulation of genes involved in learning and memory, suggesting that sneaking is more cognitively demanding than courtship.
Can Modified Coronally Advanced Tunnel be an Alternative in Gingival Phenotype Modification?
ClinicalTrials.gov study NCT04690140. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from: Phenotypic and genomic plasticity of alternative male reproductive tactics in sailfin mollies
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Data from: Relative costs and benefits of alternative reproductive phenotypes at different temperatures - genotype-by-environment interactions in a sexually selected trait
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Data from: "Alternative phenotypes within mating systems" in The evolution of insect mating systems
Insects were for a long time considered simple organisms with unvarying behavioural repertoires, incapable of complicated behavioural responses to changing environments and/or social conditions. However, nothing could be further from the truth; phenotypic plasticity is widespread in insect development, life history, physiology, and behaviour (Whitman and Ananthakrishnan 2009). Plastic responses to environmental and social conditions are actually central to the remarkable adaptability of insects, and have played a crucial role in their evolutionary histories (Moczek 2010; Simpson et al. 2011). Moreover, phenotypic plasticity in insects is not merely restricted to simple responses in metabolism or activity to abiotic factors such as temperature, but can be extremely elaborate, an illuminating example of which is the learning ability of honeybees (Giurfa 2007; Hammer and Menzel 1995; Menzel 1993; Menzel and Muller 1996). Insect mating systems are no exception to this pattern. This chapter explores the intrasexual variation in behaviours and morphologies found in insect mating systems. More specifically, we focus on the evolution of the alternative means by which individuals obtain fertilizations, generally referred to as 'alternative mating tactics', or 'alternative mating phenotypes' (AMPs). The first studies to describe what we can interpret today as cases of AMPs in insects date back to at least the 1930s (Salt 1937), but it was only in the 1970s that the number of studies reporting this phenomenon started to accumulate. In 1983, when the classic examples of AMPs in digger bees and scorpionflies were reviewed by Thornhill and Alcock (1983), approximately 50 cases of AMPs in insects were already known, a number that has now surpassed the 200 mark. Here, we review the theoretical and empirical advances that have been made in this area since Thornhill and Alcock's volume. We start by describing two illustrative systems in detail, gryllid field crickets and onthophagine dung beetles. These two groups were chosen because their reproductive biology is well known, and because the contrasting degrees of behavioural plasticity and morphological specialisation between alternative phenotypes in these two groups illustrate the diversity of AMPs that has evolved in insects. We then discuss the genetic models that have been proposed to account for the evolution and maintenance of such dimorphisms, before reviewing the occurrence of AMPs in insects more generally. Finally, we discuss the relatively limited evidence for AMPs in female insects, a somewhat new and very promising area for future research.
Data from: Experimental evolution reveals balancing selection underlying coexistence of alternative male reproductive phenotypes
Heritable alternative reproductive phenotypes (ARPs), which differ in traits associated with competition for mates, occur across taxa. If polymorphism in the genes underlying ARPs is maintained by balancing selection, selection should return ARP proportions to their equilibrium if that equilibrium is perturbed. Here, we used an experimental evolution approach to directly test this prediction in male Rhizoglyphus robini, in which two heritable morphs occur: armoured fighters and more female-like, benign scramblers. Using selection lines nearly fixed for male morph, we constructed replicate populations consisting of 50% or 94% fighters, and allowed them to evolve for 14 generations in two types of environment: simple or spatially complex. We found that in both types of populations, the proportion of fighters converged on values within a narrow range of 0.70-0.83, although the rate of convergence was slower in the complex environment. Our results thus demonstrate balancing selection acting on polymorphism(s) underlying ARPs
Data from: Integrating genomic and phenotypic data to evaluate alternative phylogenetic and species delimitation hypotheses in a recent evolutionary radiation of grasshoppers
Although resolving phylogenetic relationships and establishing species limits is a primary goal of systematics, these tasks remain challenging at both conceptual and analytical levels. Here, we integrated genomic and phenotypic data and employed a comprehensive suite of coalescent-based analyses to develop and evaluate competing phylogenetic and species delimitation hypotheses in a recent evolutionary radiation of grasshoppers (Chorthippus binotatus group) composed of two species and eight putative subspecies. To resolve the evolutionary relationships within this complex, we first evaluated alternative phylogenetic hypotheses arising from multiple schemes of genomic data processing and contrasted genetic-based inferences with different sources of phenotypic information. Second, we examined the importance of number of loci, demographic priors, number and kind of phenotypic characters, and sex-based trait variation for developing alternative species delimitation hypotheses. The best-supported topology was largely compatible with phenotypic data and showed the presence of two clades corresponding to the nominative species groups, one including three well-resolved lineages and the other comprising a four-lineage polytomy and a well-differentiated sister taxon. Integrative species delimitation analyses indicated that the number of employed loci had little impact on the obtained inferences but revealed the higher power provided by an increasing number of phenotypic characters and the usefulness of assessing their phylogenetic information-content and differences between sexes in among-taxa trait variation. Overall, our study highlights the importance of integrating multiple sources of information to test competing phylogenetic hypotheses and elucidate the evolutionary history of species complexes representing early-stages of divergence where conflicting inferences are more prone to appear.
Data from: Integrating genomic and phenotypic data to evaluate alternative phylogenetic and species delimitation hypotheses in a recent evolutionary radiation of grasshoppers
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Data from: Experimental evolution reveals balancing selection underlying coexistence of alternative male reproductive phenotypes
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Data from: "Alternative phenotypes within mating systems" in The evolution of insect mating systems
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Data from: Seasonality maintains alternative life history phenotypes
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Alternative spliced genes downstream of EMT enhance phenotypic plasticity and malignant behaviour in colon cancer
GEO Series GSE192877. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Soluble CD83 modulates human-monocyte-derived macrophages towards alternative phenotype, function and metabolism
GEO Series GSE245761. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Cancer-specific alternative polyadenylation shapes tumor phenotypes in vivo
GEO Series GSE212278. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct
GEO Series GSE54679. Mus musculus. 14 samples. Type: Expression profiling by array.
Phenotypic and transcriptional analysis of the antimicrobial effect of lactic acid bacteria on carbapenem-resistant Acinetobacter baumannii: Lacticaseibacillus rhamnosus CRL 2244 an alternative strate
GEO Series GSE236782. Acinetobacter baumannii; Lacticaseibacillus rhamnosus. 6 samples. Type: Expression profiling by high throughput sequencing.
Integrative RNA-omics discovers GNAS alternative splicing as a phenotypic driver of splicing factor mutant neoplasms
GEO Series GSE164666. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing; Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.