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ShareScore release 0.9.0
Dataset results
9 results for “analytical tool”
DateLife: leveraging databases and analytical tools to reveal the dated Tree of Life
<p>Achieving a high-quality reconstruction of a phylogenetic tree with branch lengths proportional to absolute time (chronogram) is a difficult and time-consuming task. But the increased availability of fossil and molecular data, and time-efficient analytical techniques has resulted in many recent publications of large chronograms for a large number and wide diversity of organisms. Knowledge of the evolutionary time frame of organisms is key for research in the natural sciences. It also represent valuable information for education, science communication, and policy decisions. When chronograms are shared in public, open databases, this wealth of expertly-curated and peer-reviewed data on evolutionary timeframe is exposed in a programatic and reusable way, as intensive and localized efforts have improved data sharing practices, as well as incentivizited open science in biology. Here we present DateLife, a service implemented as an R package and an R Shiny website application available at www.datelife.org, that provides functionalities for efficient and easy finding, summary, reuse, and reanalysis of expert, peer-reviewed, public data on time frame of evolution. The main DateLife workflow constructs a chronogram for any given combination of taxon names by searching a local chronogram database constructed and curated from the Open Tree of Life Phylesystem phylogenetic database, which incorporates phylogenetic data from the TreeBASE database as well. We implement and test methods for summarizing time data from multiple source chronograms using supertree and congruification algorithms, and using age data extracted from source chronograms as secondary calibration points to add branch lengths proportional to absolute time to a tree topology. DateLife will be useful to increase awareness of the existing variation in alternative hypothesis of evolutionary time for the same organisms, and can foster exploration of the effect of alternative evolutionary timing hypotheses on the results of downstream analyses, providing a framework for a more informed interpretation of evolutionary results.</p>
DateLife: leveraging databases and analytical tools to reveal the dated Tree of Life
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Dataset related to article "Archival skin biopsy specimens as a tool for miRNA-based diagnosis: Technical and post-analytical considerations".
<p>microRNA raw data</p>
New Analytic Tools for aHUS and C3G Diagnosis
ClinicalTrials.gov study NCT05985122. IPD Sharing: NO. Countries: 1. Publications: 8.
A rapid review about software analytics tools architectures and challenges to apply in a company
<p>A rapid review about software analytics tools architectures and challenges to apply in a company</p>
cLoops2: a full-stack comprehensive analytical tool for chromatin interactions
GEO Series GSE179010. Homo sapiens. 8 samples. Type: Other.
Data from: Analytical tools for quantifying the morphology of invertebrate trace fossils
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A novel analytical brain block tool to enable functional annotation of discriminatory transcript biomarkers among discrete regions of the fronto-limbic circuit in primate brain
GEO Series GSE64797. Macaca mulatta. 8 samples. Type: Expression profiling by high throughput sequencing.
Center for Computational and Genomic Medicine Analytic Tools
The Center for Computational and Genomic Medicine, established in 2018 with the recruitment of Yi Xing, PhD, drives biological discoveries and medical innovations by integrating genomics, big data, and computing. The Center contributes to CHOP's entire ecosystem of research, including collaborations with other key Centers of Emphasis, including the Center for Cellular and Molecular Therapeutics and the Department of Biomedical and Health Informatics. The Center provides an intellectual home for recruiting tenure track faculty who are not only adept at using existing technology, but also can develop new genomic technologies or computational tools that can be offered to a broader community of scientists. The Center has hybrid character - computational biology research will pave the way for new projects in wet laboratories. Under Dr. Xing's direction, the Center aims to serve as an engine for technological and biomedical innovation, providing tight interaction from both the basic science and technology side, as well as the translational and clinical side of genomics and computational biology.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.