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ShareScore release 0.9.0
Dataset results
10 results for “ancestry mapping”
An updated map of GRCh38 linkage disequilibrium blocks based on European ancestry data
<p>A map of approximately independent linkage disequilibrium (LD) blocks has many uses in statistical genetics. Current publicly available LD block maps are based on sparse recombination maps and are only available for GRCh37 (hg19) and prior genome assemblies. We generated LD blocks in GRCh38 for European (EUR) ancestry populations using a recent recombination map based on more than 115,000 individuals. This new map consists of 1,361 independent LD blocks across the 22 autosomal chromosomes and can be accessed at https://github.com/jmacdon/LDblocks_GRCh38</p>
Results from the revision of MultiSuSiE improves multi-ancestry fine-mapping in All of Us whole-genome sequencing data
<p>afr47041.zip, lat36378.zip, and eur115620.zip contain All of Us Summary Statistics used in the revised version of "MultiSuSiE improves multi-ancestry fine-mapping in All of Us whole-genome sequencing data". Summary statistics for three cohorts are included: Afr47k, Lat36k, and Eur116k. These cohorts have not been downsampled to have equal levels of missingness.</p> <p>pips.tsv contains fine-mapped variants with PIP > 0.01 via MultiSuSiE from the revised version of "MultiSuSiE improves multi-ancestry fine-mapping in All of Us whole-genome sequencing data". Subcohorts with the _unmatched suffix have not been downsampled to have equal levels of phenotyped missingness across ancestries. </p> <p>MultiSuSiE-main.zip contains the MultiSuSiE software packages (corresponds to the Github repo on 10/16/2025).</p> <p>Please cite:</p> <p>Rossen, Jordan, et al. "MultiSuSiE improves multi-ancestry fine-mapping in All of Us whole-genome sequencing data." <em>medRxiv</em> (2024): 2024-05.</p> <p> </p>
Improved multi-ancestry fine-mapping identifies cis-regulatory variants underlying molecular traits and disease risk
<p>sushie.molqtl.weights.tar.gz contains ancestry-specific eQTL and pQTL weights trained on mRNA and protein levels measured in American European, American African, and American Hispanic ancestries from TOPMed-MESA and GENOA studies. Column “a1” is the counting allele.</p> <p>mesa.*.fusion.tar.gz contains the weights in FUSION format.</p> <p>sushie_real_data_results.tar.gz contains all the real data analyzed in the sushie project.</p> <p>sushie_sim_data_results.tar.gz contains all the sim data analyzed in the sushie project.</p> <p>sushie_analysis_codes.tar.gz contains all the codes and scripts to generate and analyze these data.</p>
Mapping the relative accuracy of cross-ancestry prediction
<p>GWAS for six traits for SNPs from the UK Biobank arrays set, six traits for SNPs from the HapMap set, and three traits for SNPs from the ARIC study set.</p>
Data from: Admixture mapping in two Mexican samples identifies significant associations of locus ancestry with triglyceride levels in the BUD13/ZNF259/APOA5 region and fine mapping points to rs964184 as the main driver of the association signal
Open the record for dataset details and reuse information.
Development of Polygenic Risk Scores in Colon Cancer Patients Through the Study of Ancestry and Diversity in Genetic Maps of the Brazilian Population - ORIGEM Project
ClinicalTrials.gov study NCT06917794. IPD Sharing: NO. Countries: 1. Publications: 0.
Single nuclei chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry [10X single-cell multiome]
GEO Series GSE244585. Homo sapiens. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Single nuclei chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry
GEO Series GSE244594. Homo sapiens. 84 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Single nuclei chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry [scRNA-seq]
GEO Series GSE244583. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Single nuclei chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry [GeoMx]
GEO Series GSE244593. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing; Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.