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2 results for “aquatic microbiome”
A georeferenced rRNA amplicon database of aquatic microbiomes from South America
<p>Here we present the samples and data used in Metz & Huber et al. (2022) to construct <strong>µSudAqua[db].</strong></p> <p><strong>µSudAqua[db]</strong> contains over 866 georeferenced samples with contextual environmental information manually revised. For its integration and validation, we constructed a curated database (<strong>µSudAqua[db.sp]</strong>) using the DADA2 pipeline (https://github.com/microsudaqua/usudaquadb). It comprised ~60% of the total georeferenced samples of the <strong>µSudAqua[db]</strong>.</p> <p>Here we provide five files compressed in a zip file .</p> <ul> <li>The <em>microsudaqua_metadata_Vx </em>presents the metadata associated with the samples used to build the <strong>µSudAqua[db] </strong>database. For samples included in the <strong>µSudAqua[db.sp]</strong> database, the number of high-quality reads and Amplicon Sequences Variants (ASVs) defined is also indicated.</li> <li>The archive <em>microsudaqua_rawtable_Vx </em>harvests the<em> </em>number of reads in each sample (<strong>µSudAqua[db.sp]</strong>).</li> <li>The archive <em>microsudaqua_rawseqs_Vx</em> harvests the nucleotide sequences of each ASV (<strong>µSudAqua[db.sp]</strong>).</li> <li>The archive <em>microsudaqua_rawtaxonomy_blast_silva132_nr99_Vx </em>harvests taxonomic classification of each ASV (<strong>µSudAqua[db.sp]</strong>).</li> <li>The archive <em>microsudaqua_bacteria_filtered_50reads_with_taxonomy_Vx</em> harvests the Bacterial filtered ASVs, with more than 50 reads in at least three samples (<strong>µSudAqua[db.sp]</strong>).</li> </ul> <p>Further information regarding data usage and processing is available in the @microsudaqua GitHub (https://github.com/microsudaqua/usudaquadb)</p> <h3><strong>Version history</strong></h3> <ul> <li>February 2025 / version V.1.1: microsudaqua_data_V1.1_Feb2025.zip <ul> <li>The metadata file has been updated: microsudaqua_metadata_V1.1_Feb2025.txt</li> </ul> </li> </ul> <ul> <li>July 2022 / version V.1.0: microsudaqua_data_V1.0_July2022.zip.</li> </ul> <p> </p>
Raw data of microcosm assay - impact of herbicides to aquatic microbiome
<p>Raw data of microcosm assay - impact of herbicides to aquatic microbiome</p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.