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Dataset results
16 results for “array design”
Data for "How Array Design Creates SNP Ascertainement Bias"
<p>The repository contains the raw SNP data in vcf format for the publication "How Array Design Creates SNP Ascertainment Bias". Note that the variants are <strong>not</strong> filtered at this timepoint. Samples starting with pl_ are pooled sequences of ~10 individuals while samples starting with i_ were individually sequenced. Please find detailed information about samples, raw sequencing data and SNP calling pipeline in the linked preprint (<a href="https://doi.org/10.1101/833541">https://doi.org/10.1101/833541</a>)/ publication (<a href="https://doi.org/10.1371/journal.pone.0245178">https://doi.org/10.1371/journal.pone.0245178</a>). In case you need additional information, please contact<a href="mailto:johannes.geibel@uni-goettingen.de"> johannes.geibel@uni-goettingen.de</a></p>
Design and performance of an ecosystem-scale forest soil warming experiment with infrared heater arrays
<p><span>How forest ecosystems respond to climate warming will determine forest trajectories over the next 100 years. However, the potential effects of elevated temperature on forests remain unclear, </span><span>primarily because of the absence of long-term and large-size field warming experiments in forests, especially in Asia.</span></p> <p><span>Here, we present the design and performance of an ecosystem-scale warming experiment</span><span> using an infrared (IR) heater array in a 60-year-old temperate mixed forest at Qingyuan Forest CERN in northeastern China.</span></p> <p><span>In paired </span><span>108 m<sup>2</sup> plots (n = 3),</span><span> the surface soils were constantly elevated 2 degrees</span><span> above control plots with a feedback control system over four years (2018-2021). Subsoils down to 60 cm depth were warmed 1.2-2 degrees</span><span>. Soil warming did not affect soil moisture either in surface soils or subsoils. Turn-off time due to weather extremes (heavy rains, snow) and power outages only accounted for 2.5% of the total warming period.</span></p> <p><span>In conclusion, we provide a proof-of-principle setup that allows long-term analysis of forest response to warming temperatures in large-size field plots. Importantly, our warming experiment demonstrated the feasibility of IR heater arrays for soil warming in tall-statured forest ecosystems.</span></p>
Design and performance of an ecosystem-scale forest soil warming experiment with infrared heater arrays
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Data from: A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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IF002 - Custom designed Agilent arrays result on the Cystic Fibrosis model in ferrets.
GEO Series GSE49061. Mustela putorius furo. 16 samples. Type: Expression profiling by array.
An experimental loop design improves the detection of congenital chromosomal aberrations by array CGH
GEO Series GSE6538. Homo sapiens. 27 samples. Type: Genome variation profiling by genome tiling array.
Design and use of multiplexed chemostat arrays
GEO Series GSE36691. Saccharomyces cerevisiae. 7 samples. Type: Expression profiling by array; Genome variation profiling by array.
Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray
GEO Series GSE28152. Pseudomonas aeruginosa UCBPP-PA14; Pseudomonas paraeruginosa PA7; Pseudomonas aeruginosa 2192; Pseudomonas aeruginosa LESB58; Pseudomonas aeruginosa AES-1R; Pseudomonas aeruginosa PAO1; Pseudomonas aeruginosa C3719; Pseudomonas aeruginosa; Pseudomonas aeruginosa PACS2. 8 samples. Type: Expression profiling by array.
Expression data collected using a custom Affymetrix array (Adenoma Biomarker Gene Chip) designed to differentiate neoplastic colorectal from non-neoplastic
GEO Series GSE24713. Homo sapiens. 68 samples. Type: Expression profiling by array.
Expression analysis of uninfected Boechera stricta and infected Boechera stricta with Puccinia monoica forming pseudoflowers using an Arabidopsis thaliana gene expression 4x72K array design from Nimbl
GEO Series GSE41165. Arabidopsis thaliana; Boechera stricta. 8 samples. Type: Expression profiling by array.
Design of a Tobacco Exon Array with application to investigate the differential cadmium accumulation property in two tobacco varieties
GEO Series GSE42319. Nicotiana tabacum. 21 samples. Type: Expression profiling by array.
Design of a Diagnostic Pan-Pathogen Oligonucleotide Microarray including a sub-Array for Detection of Meningitis-Causing Bacterial Pathogens
GEO Series GSE30794. Haemophilus influenzae; Staphylococcus aureus; Neisseria meningitidis; Listeria monocytogenes; Neisseria flavescens; Streptococcus agalactiae; Streptococcus pneumoniae; Homo sapiens; Neisseria lactamica; synthetic construct. 68 samples. Type: Other.
Using pooled earthworm RNA to test 244K probes on TA-2 test array design 2520023 antisense 1
GEO Series GSE16548. Eisenia fetida. 4 samples. Type: Expression profiling by array.
Using pooled earthworm RNA to test 244K probes on TA-1 test array design 2520022 sense 1
GEO Series GSE16536. Eisenia fetida. 4 samples. Type: Expression profiling by array.
Using pooled earthworm RNA to test 244K probes on TA-3 test array design 2520024 sense 2
GEO Series GSE16549. Eisenia fetida. 4 samples. Type: Expression profiling by array.
Using pooled earthworm RNA to test 244K probes on TA-4 test array design 2520025 antisense 2
GEO Series GSE16550. Eisenia fetida. 4 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.