Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
42
datasets available to search
ShareScore release 0.9.0
Dataset results
42 results for “associations with other animals”
Data set for publication: Determination of Virulence-Associated Genes and Antimicrobial Resistance Profiles in Brucella Isolates Recovered from Humans and Animals in Iran Using NGS Technology
<p>This dataset includes information on resistance profiling, as well as antimicrobial resistance (AMR) genes and virulence-related factors that were identified in <em>Brucella</em> isolates recovered from humans and animals in different regions of Iran using classical phenotyping and next-generation sequencing (NGS) technology.</p>
Dataset associated with article "Robots mediating interactions between animals for interspecies collective behaviors"
<p>This dataset contains results and analysis described in the study "Robots mediating interactions between animals for interspecies collective behaviors", Bonnet, F., Mills, R., Szopek, M., Schönwetter-Fuchs, S., Halloy, J., Bogdan, S., Correia, L., Mondada, F. and Schmickl, T. (2019), <em>Science Robotics</em>, <em>4</em>(28), doi: 10.1126/scirobotics.aau7897</p> <p>Contents: </p> <ul> <li>experimental data (logs from robotic systems, example videos)</li> <li>animal tracking analysis output</li> </ul> <p>See the readme and summary files contained within the archives for further details.</p>
Red vision in animals is broadly associated with lighting environment but not types of visual task
<p>Red sensitivity is the exception rather than the norm in most animal groups. Among species with a long wavelength sensitive (LWS) photoreceptor, peak wavelength sensitivity (λ<sub>max</sub>) varies substantially and it is unclear whether this variation can be explained by visual tuning to the light environment or to visual tasks such as signalling or foraging. Here, we examine long wavelength sensitivity across a broad range of taxa showing diversity in LWS photoreceptor λ<sub>max</sub>: insects, crustaceans, arachnids, amphibians, reptiles, fish, sharks and rays. We identified 161 species with a LWS photoreceptor (λ<sub>max</sub> ≥ 550 nm). We found evidence supporting visual tuning to the light environment: terrestrial species had longer λ<sub>max</sub> than aquatic species, and of these, species from turbid shallow waters had longer λmax than those from clear or deep waters. Of the terrestrial species, diurnal species had longer λ<sub>max</sub> than nocturnal species, but we did not detect any differences across terrestrial habitats (closed, intermediate or open). We found no association with proxies for visual tasks such as having red morphological features or utilising flowers or coral reefs. These results support the emerging consensus that, in general, visual systems are adapted to broad range of tasks, rather than tuned to certain tasks.</p>
Taking advantage from phenotype variability in a local animal genetic resource: identification of genomic regions associated with the hairless phenotype in Casertana pigs
<p>Ped and Map files for 96 Casertana breed pigs genotyped with Illumina BeadChip 60K Porcine.<br> The first field of the ped file contains the id of the farm (1az-6az).<br> The hairless phenotype, in the ped phenotype field, is codified as 1, the hairy phenotype is codified as 2.</p>
Dihydrosphingolipids are associated with steatosis and increased fibrosis damage in human and animal models of non-alcoholic fatty liver disease
<p>Data sets used for the article entitled: "Accumulation of dihydrosphingolipids and neutral lipids is related to steatosis and fibrosis damage in human and animal models of non-alcoholic fatty liver disease"</p> <p>- Patient data: DATA Patients JLR.xlsx</p> <p>- Mouse data: DATA Mice.xlsx</p>
Red vision in animals is broadly associated with lighting environment but not types of visual task
Open the record for dataset details and reuse information.
Data from: Assessing the association between animal color and behavior: A meta-analysis of experimental studies
Open the record for dataset details and reuse information.
Data associated with: Recording animal-view videos of the natural world using a novel camera system and software package
<p>Data associated with Vasas V, Lowell MC*, Villa J*, Jamison QD*, Siegle AG*, Katta PVR*, Bhagavathula P*, Kevan PG, Fulton D, Losin N, Kepplinger D, Salehian S, Forkner RE, Hanley D (2023) Recording animal-view videos of the natural world using a novel camera system and software package. PLoS Biology. DOI: 10.1371/journal.pbio.3002444</p>
Data associated with the paper "Exploiting Color space geometry for visual stimulus design across animals"
<p>These are the pickled data files (pickled using pandas.DataFrame objects in Python) associated with the supplementary figures S4 and S7. </p> <p>* amp_1155: Data for S4B</p> <p>* amp_1156: Data for S4A</p> <p>* amp_518: Data for S7C-D</p> <p>* amp_529: Data for S7E-F</p>
Diaspore traits specialized to animal adhesion and sea current dispersal are positively associated with the naturalization of European plants across the World
<p>Understanding what drives non-native species naturalization (the establishment of a self-sustainable population outside its native range) is a central question in invasion science. Plants' capacity for long distance dispersal (LDD) is likely to influence the spread and naturalization of non-native species differently according to their introduction pathways. These pathways include intentional introductions (for economic use, e.g. for agriculture), unintentional introductions (e.g. seed contaminants), plant dispersal via human infrastructures (e.g. roads), and plant spread from an adjacent region where the species was previously introduced. Herein, we tested the relationship between sets of LDD traits (syndromes) of 10,308 European plant species and their global naturalization incidence (i.e. whether a species has become naturalized or not) and extent (i.e. the number of regions where a species has become naturalized) using the most comprehensive database of naturalized plants worldwide (GloNAF). Diaspore traits allowed the identification of four traditional LDD syndromes, namely those with specializations for dispersal by: wind (anemochorous), animal ingestion (endozoochorous), attached to animals (epizoochorous), and sea currents (thalassochorous). These evolutionary specializations have been historically interpreted by biologists even though actual dispersal is not always related to diaspore syndromes. We found that while epizoochorous and thalassochorous traits are positively associated with global plant naturalization incidence, anemochorous and endozoochorous traits show a negative relationship. Species´ residence time outside their native range, their economic use and presence of epizoochorous traits (such as hooks, hairs and adhesive substances) are positively associated with global naturalization extent. Furthermore, we found that plants' economic use reduces the influence of LDD syndromes on the naturalization incidence of intentionally introduced plants. While the success of non-native plants is influenced by a broad array of species- and context-specific factors, LDD syndromes play an important role in this context depending on the economic use of plants.</p>
Modelling migraine-related features in the nitroglycerin animal model: trigeminal hyperalgesia is associated with affective status and motor behaviour
<p>This dataset comprises the findings obtained in the study aimed at exploring the correlation between trigeminal hyperalgesia and affective status or behavioral components in a migraine-specific animal model based on nitroglycerin administration (see article <em>Modelling migraine-related features in the nitroglycerin animal model: trigeminal hyperalgesia is associated with affective status and motor behaviour).</em></p> <p>In vivo assessments performed in male Sprague-Dawley rats four hours after treatment with nitroglycerin (10mg/kg, i.p.) or its vehicle:</p> <p>- in the open field test were evaluated: time spent (expressed in seconds) in the center of the apparatus as a measure of anxiety; distance (expressed in meters) travelled in the apparatus as a measure of motor behaviour; number of rearings as a measure of exploratory behaviour; time spent in grooming behavior (expressed in seconds) used as nociception index;</p> <p>- evaluation of trigeminal hyperalgesia in the orofacial formalin test: the face rubbing was measured counting the seconds the animal spent grooming the injected area (upper lip, lateral to the nose) with the ipsilateral forepaw or hindpaw 0–3 min (Phase I) or 12–45 min (Phase II) after formalin injection (50 µl, s.c.). The observation time was divided into 15 blocks of 3 min each.</p> <p><strong>RESULTS</strong></p> <p>The data analysis shows an inverse correlation between trigeminal hyperalgesia and motor or exploratory behavior, and a positive association with anxiety-like behavior of spontaneous grooming.</p> <p>These findings further expand on the translational value of the migraine-specific model based on nitroglycerin administration and prompt additional parameters that can be investigated to explore the complexity of the disease.</p>
Supplementary Data associated with the article "LukProt: A database of eukaryotic predicted proteins designed for investigations of animal origins"
<p>Supplementary Data associated with the article "LukProt: A database of eukaryotic predicted proteins designed for investigations of animal origins" - BUSCO example.</p> <p> </p> <p>National Science Centre of Poland is acknowledged for funding of the project 2020/36/C/NZ8/00081, "The role of glycosylation in the emergence of animal multicellularity", which enabled the creation of this dataset.</p> <p> </p> <p> </p>
Data from: Trophic level and basal resource use of soil animals are hardly affected by local plant associations in abandoned arable land
Stable isotope composition of plants and soil animals in abandoned arable land <p>Dataset provides raw data on stable isotope composition of C and N of plants and soil meso- and macrofauna. Dominating animal groups were collected in arable fallow systems 3 and 14-16 years after abandonment. Animals were sampled from the rhizosphere of three plant species of different functional groups: a legume (Medicaco sativa), a non-legume herb (Taraxacum officinale) and a grass (Bromus sterilis). More information can be found in the associated paper.</p>
Different sources of natural products from the (a) bacterial, (b) archaeal, (c) fungal, (d) protozoan, (e) chromistan, (f) plant and (g) animal kingdoms, the rationale(s) for screening them for antibacterial activity, and associated advantages and disadvantages
<p>This table of information is from the review article 'Bioprospecting for Antibacterial drugs: A Multidisciplinary Perspective on Natural Product Source Material, Bioassay Selection and Avoidable Pitfalls' (<a href="https://doi.org/10.1007/s11095-020-02849-1">https://doi.org/10.1007/s11095-020-02849-1</a>).</p>
Animal data associated with: Pattern dynamics and stochasticity of the brain rhythms
<p>Our current understanding of brain rhythms is based on quantifying their instantaneous or time-averaged characteristics. What remains unexplored, is the actual structure of the waves–their shapes and patterns over finite timescales. The data published here are used to study brain wave patterning in different physiological contexts using two independent approaches: the first is based on quantifying stochasticity relative to the underlying mean behavior, and the second assesses "orderliness'' of the waves' features. The corresponding measures capture the waves' characteristics and abnormal behaviors, such as atypical periodicity or excessive clustering, and demonstrate coupling between the patterns' dynamics and the animal's location, speed, and acceleration. Specifically, patterns of θ, γ, and ripple waves recorded in mice hippocampi and observed speed-modulated changes of the wave's cadence, an antiphase relationship between orderliness and acceleration, as well as spatial selectiveness of patterns, are derived from the data. The results offer a complementary–mesoscale–perspective on brain wave structure, dynamics, and functionality.</p>
Animal data associated with: Pattern dynamics and stochasticity of the brain rhythms
Open the record for dataset details and reuse information.
Diaspore traits specialized to animal adhesion and sea current dispersal are positively associated with the naturalization of European plants across the World
Open the record for dataset details and reuse information.
Data from: Trophic level and basal resource use of soil animals are hardly affected by local plant associations in abandoned arable land
Open the record for dataset details and reuse information.
Proteoglycan 4 (lubricin) is a highly sialylated glycoprotein associated with cardiac valve damage in animal models of infective endocarditis
Open the record for dataset details and reuse information.
Greater landscape-scale forest cover and animal-mediated seed dispersal syndromes associate with faster recovery rates in restoring tropical Andean forests
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.