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34 results for “atomic resolution”
Atomic resolution X-ray diffraction images for methanol dehydrogenase from Methylobacterium extorquens.
<p>Atomic resolution X-ray diffraction images for methanol dehydrogenase from <em>Methylobacterium extorquens</em> collected at ESRF (Grenoble, France) using beamline ID29 in May 2002 with an ADSC detector. The diffraction resolution for the first pass is approximately 1.1 - 1.2 Angstroms and a second pass was collected to recoup the reflections that were overloaded in the first pass. More details of the data collection are in the included scanned notes and log files. </p>
Atomic resolution X-ray diffraction images of native endothiapepsin.
<p>X-ray diffraction images that were collected at DESY (Hamburg) to a resolution of 0.9 Angstroms from native endothiapepsin. The data were collected using a MAR345 detector at beamline BW7B in June 1999. More details are in the included notes. </p>
Atomic resolution X-ray diffraction images for endothiapepsin complexed with the inhibitor H261.
<p>X-ray diffraction images for a complex of endothiapepsin with the hydroxyethylene renin inhibitor H261 which were collected at DESY (Hamburg) in June 1998 using the beamline BW7B with a Mar image plate detector in two passes. The data extend to a resolution of almost 1.1 Angstroms. More details are given in the accompanying notes. </p>
Atomic resolution X-ray diffraction images for endothiapepsin complexed with a cyclic statine inhibitor.
<p>X-ray diffraction images for endothiapepsin complexed with inhibitor CP-129,541. The data were collected on 29th April 2001. </p>
Bacteriophage Lambda Structure at Atomic Resolution
<p>Bacteriophage Lambda structure at atomic resolution. This structure has been constructed in UCSF Chimera software putting together all the structures that compose bacteriophage lambda using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com Website: https://www.drvictorpadillasanchez.com</p>
Dataset 2 for: Multi-eGO: an in-silico lens to look into protein aggregation kinetics at atomic resolution
<p><strong>Dataset</strong></p> <p>Molecular dynamics simulation trajectories of TTR peptide aggregation kinetics:</p> <ul> <li>multi-eGO-XXmM-Y: aggregation kinetics simulations of TTR using the multi-eGO force field at XXmM concentration replicate Y.</li> </ul>
Figure 2 in High-Resolution Functional Imaging of Native Proteins using Force Distance Curve Based Atomic Force Microscopy
Figure 2. - Juvenile Trachipterus arcticus, 129 mm SL, collected at Faial Island, Azores, 14 May 2014, on the surface. A: Portrait with anterior black facet visible; B: Oblique lateral view with first spines erected; note orange bulbous outgrowths on the prolonged spine; C: Lateral view showing proportions, markings and orientation of fins. Scale bars: A = 1 cm; B, C = 5 cm.
Figure 1 in High-Resolution Functional Imaging of Native Proteins using Force Distance Curve Based Atomic Force Microscopy
Figure 1. - Adult Trachipterus arcticus, about 1.8 m long, observed south of Pico Island, Azores, 18 Aug. 2013, 950 m deep.
Bacteriophage phi29 Structural Model at Atomic Resolution
<p>Bacteriophage phi29 structural model at atomic resolution. This structural model has been constructed in UCSF Chimera software putting together all the structures that compose bacteriophage phi29 using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Bacteriophage SPP1 Structural Model at Atomic Resolution
<p>Bacteriophage SPP1 structural model at atomic resolution. This structural model has been constructed in UCSF Chimera software putting together all the structures that compose bacteriophage SPP1 using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Mycobacteriophage ZoeJ Structural Model at Atomic Resolution
<p>Mycobacteriophage ZoeJ structural model at atomic resolution. This structural model has been constructed in UCSF Chimera software putting together all the structures that compose mycobacteriophage ZoeJ using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Adenovirus D26 Structural Model at Atomic Resolution
<p>Adenovirus D26 structural model at atomic resolution. This structural model has been constructed in UCSF Chimera software putting together all the structures that compose Adenovirus D26 using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Bacteriophage T5 Structure at Atomic Resolution
<p>Bacteriophage T5 structure at atomic resolution. This structure has been constructed in UCSF Chimera software putting together all the structures that compose bacteriophage T5 using cryoEM reconstructions and pdb structures updated to October 2025. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Bacteriophage T7 Structure at Atomic Resolution.
<p>Bacteriophage T7 structure at atomic resolution. This structure has been constructed in UCSF Chimera software putting together all the structures that compose bacteriophage T7 using cryoEM reconstructions and pdb structures. By Dr. Victor Padilla-Sanchez, PhD from Washington Metropolitan University. Email: drvictorpadilla@aol.com</p>
Dataset belonging to the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper"
<p>This repository contains the raw data of the experimental (S)TEM imaging and the data corresponding to the simulations and theoretical calculations of the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper",. A pre-print version of the paper is available on arXiv: <a href="http://doi.org/10.48550/arXiv.2212.01180">http://doi.org/10.48550/arXiv.2212.01180</a></p> <p>See the file README.md for a detailed description.</p>
Atomic resolution X-ray crystal structure of cisplatin bound to hen egg white lysozyme stored for 5 years ‘on the shelf’
<p>These are the raw diffraction images for crystals 1 and 2 underpinning PDBe code 5LXW.</p>
Probing structural superlubricity of two-dimensional water transport with atomic resolution.
<p>Here lies the tabulated data used to create the Figures for the Science manuscript ado1544 titled "Probing structural superlubricity of two-dimensional water transport with atomic resolution".</p>
Molecular dynamics trajectories of pYEEI:SH2 recognition, unbiased, at all-atom resolution.
<div> </div> <p>Set of 772 all-atom trajectories simulated from an unbound (apo) configuration of the human p56 -lck tyrosine kinase SH2 domain with its high-specificity phosphopeptide recognition substrate pYEEI (initial structure based on PDB:<a href="https://www.rcsb.org/structure/1LKK">1LKK</a> ). Approximately 24 trajectories spontaneously reach a bound state with ligand RMSD < 2 Â from the crystal. System building and run details are described in [1].</p> <p>A preliminary version of this dataset have been analyzed and discussed in [1] (approx 200 ns per trajectory were available and used in [1]). </p> <p>The trajectories provided here are extended to ~800 ns each, for a total of ~640 μs sampled time. The full dataset is analyzed in [2] with a SOM-based technique.</p> <div> <h2>Notes</h2> </div> <div> <ul> <li>These are all-atom simulations (with TIP3P water). Water molecules have been stripped off from these files (filtered).</li> <li>Not all trajectories have the same length. Some are cut short due to the distributed computing setup.</li> <li>Frame-to-frame interval is 1 ns.</li> </ul> </div> <h2>Acknowledgments</h2> <p>We thank the volunteers of the GPUGRID.net project for donating computing time.</p> <p> </p> <h2>References</h2> <p>[1] T. Giorgino, I. Buch, and G. De Fabritiis. <a href="https://pubs.acs.org/doi/10.1021/ct300003f">Visualizing the Induced Binding of SH2-Phosphopeptide</a>, J. Chem. Theory Comput. 2012, 8, 4, 1171-1175. doi:10.1021/ct300003f</p> <p>[2] Lara Callea, Camilla Caprai, Laura Bonati, Toni Giorgino, Stefano Motta. Self-Organizing Maps of Unbiased Ligand-Target Binding Pathways and Kinetics. J. Chem. Phys, 2024. https://doi.org/10.1063/5.0225183 </p> <p> </p> <div> </div> <div> <p> </p> </div>
Atomic-resolution imaging of surface and core melting in individual size-selected Au nanoclusters on carbon
<p>Experimental and theoretical data sets for the Nature Communications paper "Atomic-resolution imaging of surface and core melting in individual size-selected Au nanoclusters on carbon". Data structure and formats are described in the README.docx file.</p>
Dataset for Interlacing in atomic resolution scanning transmission electron microscopy
<p>Dataset for the publication: Interlacing in atomic resolution scanning transmission electron microscopy</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.