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832 results for “automatic”
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Chemiehochhaus (FRCHEM) from 2021-01-01 to 2021-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban rooftop weather station at Freiburg-Chemiehochhaus (FRCHEM, 7.8486ºE, 48.0011ºN, 323.5 m) using an actively ventillated and shielded psychrometer operated 2m above roof level.</p> <ul> <li>Quality controlled air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2021.</li> <li>Average, minimum and maximum air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRCHEM_2021_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Data and software: Stress and heat flux via automatic differentiation
<h4><strong>glp-archive</strong></h4><h2><strong>Code and Data for "Stress and heat flux with automatic differentiation"</strong></h2><p>This repository contains data, code, and related artefacts supporting the following publication (<a href="https://arxiv.org/abs/2305.01401">preprint</a>):</p><p>Stress and heat flux via automatic differentiation</p><p>by Marcel F. Langer, J. Thorben Frank, and Florian Knoop</p><p><i>J. Chem. Phys.</i> 159, 174105 (2023) <a href="https://doi.org/10.1063/5.0155760">doi:10.1063/5.0155760</a></p><p>This repository is available at <a href="https://github.com/sirmarcel/glp-archive">https://github.com/sirmarcel/glp-archive</a>. Selected versions are archived on Zenodo, under <a href="https://doi.org/10.5281/zenodo.7852529">doi:10.5281/zenodo.7852529</a>.</p><h2><strong>Overview</strong></h2><p>Each subfolder in this repository contains a README.md with additional information. The subfolders are:</p><ul><li>results/: Data and code that produced the figures in the manuscript</li><li>work/: Computational workflows, models, etc.</li><li>infra/: Project-specific infrastructure code</li><li>meta/: Scripts for assembling this archive; can be ignored but is retained for transparency.</li></ul><h2><strong>Related external code</strong></h2><p>The work in this repository relies on a few tools that the authors maintain separately:</p><ul><li><a href="https://github.com/sirmarcel/glp">glp</a> implements the quantities discussed in the manuscript</li><li><a href="http://github.com/thorben-frank/mlff">mlff</a> implements the so3krates model</li><li><a href="https://github.com/flokno/tools.mlff">tools.mlff</a> provides tools for the equation of state experiments</li></ul><p>These tools were developed during the work in the manuscript. The following versions/tags reflect what was used to obtain results:</p><ul><li>glp @ v0.1.0 (tag)</li><li>mlff @ v1.0 (branch)</li><li>mlff.tools @ v0.0.1</li></ul><p>We additionally note that the GK-MD functionality has been factored out into <a href="https://github.com/sirmarcel/gkx">gkx</a>.</p><h2><strong>Versions</strong></h2><ul><li>v1.1: published version, archived at <a href="https://doi.org/10.5281/zenodo.8406532">doi:10.5281/zenodo.8406532</a></li><li>v1.0: arXiv submission v1, archived at <a href="https://doi.org/10.5281/zenodo.7852530">doi:10.5281/zenodo.7852530</a></li></ul>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Chemiehochhaus (FRCHEM) from 2022-01-01 to 2022-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban rooftop weather station at Freiburg-Chemiehochhaus (FRCHEM, 7.8486ºE, 48.0011ºN, 323.5 m) using an actively ventillated and shielded psychrometer operated 2m above roof level.</p> <ul> <li>Quality controlled air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2022.</li> <li>Average, minimum and maximum air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRCHEM_2022_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Chemiehochhaus (FRCHEM) from 2023-01-01 to 2023-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban rooftop weather station at Freiburg-Chemiehochhaus (FRCHEM, 7.8486ºE, 48.0011ºN, 323.5 m) using an actively ventillated and shielded psychrometer operated 2m above roof level.</p> <ul> <li>Quality controlled air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2023.</li> <li>Average, minimum and maximum air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRCHEM_2023_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Chemiehochhaus (FRCHEM) from 2020-01-01 to 2020-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban rooftop weather station at Freiburg-Chemiehochhaus (FRCHEM, 7.8486ºE, 48.0011ºN, 323.5 m) using an actively ventillated and shielded psychrometer operated 2m above roof level.</p> <ul> <li>Quality controlled air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2020.</li> <li>Average, minimum and maximum air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRCHEM_2020_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Werthmannstrasse (FRWRTM) from 2021-01-01 to 2021-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban weather station at Freiburg-Werthmannstrasse (FRWRTM, 7.8447ºE, 47.9928, 277 m) using a passively ventilated and shielded temperature and humidity probe (Campbell Scientific Inc., CS 215) operated in a Stevenson Screen 2m above ground level in the vegetated backyard of Werthmannstrasse 10.</p> <ul> <li>Quality controlled in-canopy air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2021.</li> <li>Average, minimum and maximum in-canopy air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRWRTM_2021_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Werthmannstrasse (FRWRTM) from 2020-01-01 to 2020-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban weather station at Freiburg-Werthmannstrasse (FRWRTM, 7.8447ºE, 47.9928, 277 m) using a passively ventilated and shielded temperature and humidity probe (Campbell Scientific Inc., CS 215) operated in a Stevenson Screen 2m above ground level in the vegetated backyard of Werthmannstrasse 10.</p> <ul> <li>Quality controlled in-canopy air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2020.</li> <li>Average, minimum and maximum in-canopy air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRWRTM_2020_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Werthmannstrasse (FRWRTM) from 2023-01-01 to 2023-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban weather station at Freiburg-Werthmannstrasse (FRWRTM, 7.8447ºE, 47.9928, 277 m) using a passively ventilated and shielded temperature and humidity probe (Campbell Scientific Inc., CS 215) operated in a Stevenson Screen 2m above ground level in the vegetated backyard of Werthmannstrasse 10.</p> <ul> <li>Quality controlled in-canopy air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2023.</li> <li>Average, minimum and maximum in-canopy air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRWRTM_2023_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Werthmannstrasse (FRWRTM) from 2022-01-01 to 2022-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban weather station at Freiburg-Werthmannstrasse (FRWRTM, 7.8447ºE, 47.9928, 277 m) using a passively ventilated and shielded temperature and humidity probe (Campbell Scientific Inc., CS 215) operated in a Stevenson Screen 2m above ground level in the vegetated backyard of Werthmannstrasse 10.</p> <ul> <li>Quality controlled in-canopy air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2022.</li> <li>Average, minimum and maximum in-canopy air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRWRTM_2022_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
EUNIS-ESy: Expert system for automatic classification of European vegetation plots to EUNIS habitats
<p><strong>EUNIS-ESy</strong> is an expert system for automatic classification of European vegetation plots to habitat types of the EUNIS Habitat Classification. The EUNIS classification and the principles of the expert system are described by <a href="https://doi.org/10.1111/avsc.12519">Chytrý et al. (2020)</a>. The classification of a set of vegetation plots can be run using the JUICE program (<a href="https://doi.org/10.1111/j.1654-1103.2002.tb02069.x">Tichý 2002</a>; <a href="https://www.sci.muni.cz/botany/juice/">https://www.sci.muni.cz/botany/juice/</a>), TURBOVEG 3 program (Hennekens 2015) and an R script (<a href="https://doi.org/10.1111/avsc.12562">Bruelheide et al. 2021</a>).</p> <p>This dataset contains two parts: (1) the expert system and related files necessary for running it; (2) characterization of EUNIS habitats based on the results of the expert system classification.</p> <p><strong>1. Expert system and related files necessary to run it</strong></p> <p>1.1. <strong>EUNIS-ESy-2025-10-03.txt </strong>– a file containing the script for the classification of vegetation plots by EUNIS-ESy. This version contains tested definitions for the revised EUNIS classification of vegetated Marine (MA), Coastal (N), Wetland (Q), Grassland (R), Shrubland (S), Forest (T), Inland sparsely vegetated (U) and Man-made (V). It also contains tested definitions of Aquatic plant communities (P3) and Springs (P2N). This file is different from the analogous file in the previous versions.</p> <p>1.2. <strong>Nomenclature-translation-from-Turboveg-2-databases.zip </strong>– an archive containing the scripts for automatic translation of taxon concepts and names used in individual European Turboveg 2 databases (<a href="https://doi.org/10.2307/3237010">Hennekens & Schaminée 2001</a>; <a href="https://www.synbiosys.alterra.nl/turboveg/">https://www.synbiosys.alterra.nl/turboveg/</a>) to the nomenclature that can be used as an input for EUNIS-ESy. This file is the same as in the previous versions.</p> <p>1.3. <strong>EUNIS-ESy-User-Guide.pdf </strong>– a brief user guide to the classification of vegetation plots by EUNIS-ESy using the JUICE program. Please read this guide carefully before running the expert system to avoid misclassifications. This file is the same as in the previous versions.</p> <p><strong>2. Characterization of the EUNIS habitats based on the results of the EUNIS-ESy classification</strong></p> <p>2.1. <strong>EUNIS-habitats-2025-10-03.xlsx </strong>– the current list of EUNIS habitats. This file is different from the analogous file in the previous versions.</p> <p>2.2. <strong>EUNIS-EuroVegChecklist-crosswalk-2025-10-03.xlsx</strong> – a crosswalk between the EUNIS habitat classification and phytosociological alliances of EuroVegChecklist (<a href="http://doi.org/10.1111/avsc.12257">Mucina et al. 2016</a>; <a href="https://floraveg.eu/vegetation/">https://floraveg.eu/vegetation/</a>).</p> <p>2.3. <strong>EUNIS-habitats-Characteristic-species-combintation-2025-10-03.xlsx </strong>– a database of habitats' characteristic species combinations in a spreadsheet format. These species combinations are based on the analysis of vegetation plots from the European Vegetation Archive (EVA; <a href="https://doi.org/10.1111/avsc.12191">Chytrý et al. 2016</a>; <a href="http://euroveg.org/eva-database">http://euroveg.org/eva-database</a>) and other databases classified by EUNIS-ESy v2025-10-03. Analytical methods are described in <a href="https://doi.org/10.1111/avsc.12519">Chytrý et al. (2020)</a>. This file is different from the analogous file in the previous versions.</p> <p>2.4. <strong>EUNIS-habitats-Distribution-maps-2025-10-03.xlsx </strong>– a set of distribution maps in the TIFF format based on the analysis of vegetation plots from the European Vegetation Archive (EVA; <a href="https://doi.org/10.1111/avsc.12191">Chytrý et al. 2016</a>; <a href="http://euroveg.org/eva-database">http://euroveg.org/eva-database</a>) and other databases classified by EUNIS-ESy v2025-10-03.</p> <p>2.5. <strong>Data-sources-EUNIS-classification-2025-10-03.pdf </strong>– a list of data sources used to produce the distribution maps and characteristic species combinations.</p> <p>-----------------------------------------------------------------------------------------------------</p> <p><strong>Differences from the previous version (2021-06-01)</strong></p> <p>Aquatic plant communities (P3), spring (P2N), some wetland (Q61-Q63) and some inland sparsely vegetated (U71-U72) habitats were added to the EUNIS-ESy expert system. Plant taxon concepts and nomenclature were extensively revised. Some previously included habitat definitions were slightly refined. New vegetation-plot records added to the EVA database by 8 August 2025 were used to characterize habitat types. Unlike in the previous version, this version does not provide Habitat factsheets because summarized information about each habitat is now available in the FloraVeg.EU database at <a href="https://floraveg.eu/habitat/">https://floraveg.eu/habitat/</a>.</p> <p>-----------------------------------------------------------------------------------------------------</p> <p> </p> <p><strong>Recommended citation of this version of the EUNIS-ESy expert system</strong></p> <p>Chytrý et al. (2020), version 2025-10-03</p> <p>Chytrý M., Tichý L., Hennekens S.M., Knollová I., Janssen J.A.M., Rodwell J.S., Peterka T., Marcenò C., Landucci F., Danihelka J., Hájek M., Dengler J., Novák P., Zukal D., Jiménez-Alfaro B., Mucina L., Abdulhak S., Aćić S., Agrillo E., Attorre F., Bergmeier E., Biurrun I., Boch S., Bölöni J., Bonari G., Braslavskaya T., Bruelheide H., Campos J.A., Čarni A., Casella L., Ćuk M., Ćušterevska R., De Bie E., Delbosc P., Demina O., Didukh Y., Dítě D., Dziuba T., Ewald J., Gavilán R.G., Gégout J.-C., Giusso del Galdo G.P., Golub V., Goncharova N., Goral F., Graf U., Indreica A., Isermann M., Jandt U., Jansen F., Jansen J., Jašková A., Jiroušek M., Kącki Z., Kalníková V., Kavgacı A., Khanina L., Korolyuk A.Yu., Kozhevnikova M., Kuzemko A., Küzmič F., Kuznetsov O.L., Laiviņš M., Lavrinenko I., Lavrinenko O., Lebedeva M., Lososová Z., Lysenko T., Maciejewski L., Mardari C., Marinšek A., Napreenko M.G., Onyshchenko V., Pérez-Haase A., Pielech R., Prokhorov V., Rašomavičius V., Rodríguez Rojo M.P., Rūsiņa S., Schrautzer J., Šibík J., Šilc U., Škvorc Ž., Smagin V.A., Stančić Z., Stanisci A., Tikhonova E., Tonteri T., Uogintas D., Valachovič M., Vassilev K., Vynokurov D., Willner W., Yamalov S., Evans D., Palitzsch Lund M., Spyropoulou R., Tryfon E., Schaminée J.H.J. (2020) EUNIS Habitat Classification: expert system, characteristic species combinations and distribution maps of European habitats. Applied Vegetation Science, 23, 648–675. https://doi.org/10.1111/avsc.12519</p>
CzechVeg-ESy: Expert system for automatic classification of vegetation plots from the Czech Republic
<p><strong>Expertní systém pro automatickou klasifikaci fytocenologických snímků z České republiky </strong><br> [popis a instrukce v češtině jsou uvedeny níže]</p> <p>***************************************************************************************************************</p> <p><strong>CzechVeg-ESy</strong> is an expert system for automatic classification of vegetation plots from the Czech Republic to the vegetation types defined in the monograph <em>Vegetation of the Czech Republic</em> (<a href="https://www.sci.muni.cz/botany/vegsci/vegetace.php?page=monograph&lang=en">Chytrý 2007-2013</a>). It is delivered in two main versions: The <strong>main version 1 (v1) </strong>is the original version used for the vegetation classification in that monograph, described in detail in its English Summary (<a href="https://www.sci.muni.cz/botany/chytry/Vegetation-Czech-Rep-Summary.pdf">Chytrý 2007</a>). Its subversions (indicated by dates) contains corrections of minor errors and species nomenclature. This version only classifies vegetation to the phytosociological associations. The <strong>main version 2 (v2)</strong> uses the same classification system as accepted in the <em>Vegetation of the Czech Republic</em>, but includes more advanced functions to provide more accurate classification. Moreover, it is hierarchical, performing classification not only to associations but also to alliances and classes (for the plots not classified at lower levels).</p> <p>Each version is delivered in two variants. The <strong>basic variant </strong>(CzechVeg-ESy-basic-v1.txt) assigns vegetation plots to associations following their formal definitions created using the Cocktail method (<a href="https://doi.org/10.2307/3236796">Bruelheide 2000</a>) modified by <a href="https://www.sci.muni.cz/botany/chytry/Koci_etal2003_JVS.pdf">Kočí et al (2003)</a>. These definitions are based on the presence of sociological species groups and the dominance of selected species. The expert system evaluates individual vegetation plots and assigns them to the associations. A classification process is considerably faster when the basic variant is used, as opposed to the full variant. The <strong>full variant</strong> (file CzechVeg-ESy-full-v1.txt) performs the same functions as the basic variant, but in addition, it can also assign the plots not classified by formal definitions based on their numerical similarity to the plots that fulfil the requirements of the formal definitions. Most of such plots can be considered as untypical from the phytosociological point of view, i.e. with poor correspondence to any of the defined vegetation types, in most cases because of the lack of ecologically specialized species. The method of similarity-based assignment is the Frequency-Positive Fidelity Index (FPFI) described in <a href="https://www.sci.muni.cz/botany/chytry/Koci_etal2003_JVS.pdf">Kočí et al. (2003)</a> and <a href="https://doi.org/10.1007/s11258-004-5798-8">Tichý (2005)</a>.</p> <p><strong>Instructions for using CzechVeg-ESy version 1</strong></p> <ol> <li>Vegetation plots have to be stored in the TURBOVEG 2 program (<a href="https://www.synbiosys.alterra.nl/turboveg/">https://www.synbiosys.alterra.nl/turboveg/</a>) with the species list Czechia-Slovakia-2015 (contained in the file TurbovegSlBackup_Czechia_slovakia_2015.zip), which is largely compatible with the older species lists called Czechia-Slovakia-2012 and Central-Europe.</li> <li>Export plots from TURBOVEG 2 to a CC! file (Export / Other formats / JUICE input files) and import this file to the JUICE program (<a href="https://www.sci.muni.cz/botany/juice/">https://www.sci.muni.cz/botany/juice/</a>) using the species list in the file Checklist-Danihelka-et-al-2012-ver-2019-07-06.txt, which converts the plant nomenclature to correspond with the Checklist of vascular plants of the Czech Republic (<a href="http://www.preslia.cz/P123Danihelka.pdf">Danihelka et al. 2012</a>).</li> <li>Select Analysis / Expert system in the JUICE program.</li> <li>Upload the expert system file (either CzechVeg-ESy-basic-v1.txt or CzechVeg-ESy-full-v1.txt) by pressing Load ES File button.</li> <li>Modify species nomenclature by pressing the Modify Species Names button.</li> <li>If there are juvenile species in the herb layer in the plots to be analysed, delete them by pressing Delete Juveniles button.</li> <li>In some cases, narrow species concepts were changed to broader concepts, resulting in repetitions of the same names in the table. These must be merged using the Merge Same Spec. Names button. This will also merge records of the same species in different vegetation layers because the expert system assumes that each species name is contained only once in the same plot.</li> <li>When using the full version of the expert system, a threshold similarity value for similarity-based assignment must be specified in the field in the bottom right part of the form. The higher the value, the fewer plots will be assigned, while only those plots will be assigned that have a high similarity to the association. If the threshold value is set to 0, all the plots will be assigned, but some of them may be very dissimilar to the associations which they are assigned to.</li> <li>Run expert system using the Classify Relevé button (a plot marked by a previous mouse click will be classified) or Classify [colour] Relevés button (all the plots of the selected colour will be assigned).</li> <li>If a single plot is classified, species groups present in this plot and the assignment of the plot to an association will be shown. If the plot is not classified, no association will be listed. Occasionally, a plot can be assigned to more than one association. If the full version of the expert system is used, the table will contain a list of associations ranked by decreasing similarity to the plot.</li> <li>If multiple plots are classified, association codes will appear in the header of those plots that were assigned based on the formal definitions. The legends for the codes can be found in a printed version of the <em>Vegetation of the Czech Republic</em>, in its online version (<a href="https://pladias.cz/en/vegetation/">https://pladias.cz/en/vegetation/</a>) or in the expert system txt file. Plots not assigned to any association will be marked with ? and those assigned to more than one association will be marked with +. If the full version of the expert system is used, the output will contain the most similar associations for those plots which have remained unassigned to associations or were assigned to more than one association.</li> <li>Using the formal definition, the expert system normally assigns some plots of a single vegetation stand to a certain association while other plots of the same stand remain unassigned. This means that the stand consists of patches with species composition typical of the given association and patches with a less typical species composition. If different plots from a single relatively homogeneous stand are assigned to different associations, it is appropriate to interpret the stand as transitional between these associations.</li> </ol> <p>This electronic publication of CzechVeg-ESy was supported by the Czech Science Foundation (grant no. 17-15168S).</p> <p>***************************************************************************************************************</p> <p><strong>CzechVeg-ESy</strong> je expertní systém pro automatickou klasifikaci fytocenologických snímků z České republiky do vegetačních typů definovaných v monografii <em>Vegetace České republiky </em>(<a href="https://www.sci.muni.cz/botany/vegsci/vegetace.php?lang=en&page=monograph">Chytrý 2007-2013</a>). Existují dvě hlavní verze tohoto expertního systému: <strong>Hlavní verze 1 (v1) </strong>je originální verze použitá pro klasifikaci v této národní vegetační monografii, která je podrobně popsaná v její metodické kapitole. Její dílčí verze (označené datem) obsahují opravy drobných chyb a nomenklatury druhů. Tato verze klasifikuje fytocenologické snímky pouze do fytocenologických asociací. <strong>Hlavní verze 2 (v2)</strong> používá stejný klasifikační systém, jaký byl použit ve Vegetaci České republiky, ale používá pokročilejší funkce umožňující přesnější klasifikaci. Tato verze také provádí hierarchickou klasifikaci nejen do asociací, ale také do svazů a tříd (pro snímky nezařazené do nižších jednotek).</p> <p>Každá verze má dvě varianty. <strong>Základní varianta </strong>(soubor CzechVeg-ESy-basic-v1.txt) přiřazuje fytocenologické snímky do asociací na základě jejich formálních definic vytvořených metodou Cocktail (<a href="https://doi.org/10.2307/3236796">Bruelheide 2000</a>) v úpravě podle práce <a href="https://www.sci.muni.cz/botany/chytry/Koci_etal2003_JVS.pdf">Kočí et al (2003)</a>. Tyto definice jsou založeny na prezenci sociologických skupin druhů a dominanci vybraných druhů. Expertní systém vyhodnocuje každý jednotlivý fytocenologický snímek v datovém souboru a řadí jej do asociace. Klasifikace pomocí základní varianty je výrazně rychlejší než klasifikace pomocí plné varianty. <strong>Plná varianta </strong>(soubor CzechVeg-ESy-full-v1.txt) zajišťuje stejné funkce jako základní varianta, ale navíc klasifikuje i snímky neklasifikované formálními definicemi, a to na základě jejich numerické podobnosti ke skupinám snímků, které vyhovují podmínkám formálních definic asociací. Většinu takových snímků lze považovat z fytocenologického hlediska za netypické porosty, tj. takové, které plně neodpovídají definovaným vegetačním typům, zpravidla kvůli absenci ekologicky specializovaných druhů. Klasifikace na základě podobnosti se počítá pomocí indexu FPFI (Frequency-Positive Fidelity Index), který definovali <a href="https://www.sci.muni.cz/botany/chytry/Koci_etal2003_JVS.pdf">Kočí et al. (2003)</a> a <a href="https://doi.org/10.1007/s11258-004-5798-8">Tichý (2005)</a>.</p> <ol> <li>Fytocenologické snímky určené k analýze musí být uloženy v databázi v programu TURBOVEG 2 (<a href="https://www.synbiosys.alterra.nl/turboveg/">https://www.synbiosys.alterra.nl/turboveg/</a>) s druhovým seznamem Czechia-Slovakia-2015 (soubor TurbovegSlBackup_Czechia_slovakia_2015.zip), který je kompatibilní s druhovými seznamy Czechia-Slovakia-2012 a Central-Europe.</li> <li>Snímky se exportují z programu TURBOVEG 2 do souboru CC! (Export / Other formats / JUICE input files) a tento soubor se importuje do programu JUICE (<a href="https://www.sci.muni.cz/botany/juice/">https://www.sci.muni.cz/botany/juice/</a>) s použitím druhového seznamu v souboru Checklist-Danihelka-et-al-2012-ver-2019-07-06.txt, čímž se nomenklatura konvertuje do nomenklatury odpovídající Seznamu cévnatých rostlin květeny České republiky (<a href="http://www.preslia.cz/P123Danihelka.pdf">Danihelka et al. 2012</a>).</li> <li>V programu JUICE se zvolí menu Analysis / Expert system.</li> <li>Tlačítkem Load ES File se nahraje do paměti soubor s příslušným expertním systémem (buď CzechVeg-ESy-basic-v1.txt, nebo CzechVeg-ESy-full-v1.txt).</li> <li>Tlačítkem Modify Species Names se upraví nomenklatura druhů tak, aby odpovídala nomenklatuře používané expertním systémem.</li> <li>Obsahují-li snímky určené k analýze juvenilní dřeviny v bylinném patru, je potřeba je vymazat tlačítkem Delete Juveniles.</li> <li>Při převodu nomenklatury se v některých případech převedlo užší pojetí druhů na širší, čímž vznikly v tabulce druhové údaje vedené pod stejnými jmény. Ty je potřeba sloučit tlačítkem Merge Same Spec. Names. Přitom se sloučí i údaje stejného druhu v různých patrech, protože expertní systém předpokládá jen jeden výskyt stejného druhového jména v jednom snímku.</li> <li>Pokud je používána plná (Full) verze expertního systému, je potřeba v okénku vpravo dole nastavit prahovou hodnotu podobnosti pro přiřazování snímků k asociacím pomocí podobnosti. Čím vyšší hodnota, tím méně snímků se přiřadí, ale přiřadí se ty, které se dané asociaci více podobají. Při hodnotě 0 se přiřadí všechny snímky, ale některé budou dané asociaci velmi nepodobné.</li> <li>Spustí se běh expertního systému, a to buď tlačítkem Classify Relevé (bude se klasifikovat jeden snímek, na který se předtím kliklo myší) nebo Classify [colour] Relevés (budou se klasifikovat všechny snímky vybrané barvy).</li> <li>Při klasifikaci jednoho snímku se zobrazí v tabulce druhové skupiny, jejich zastoupení v daném snímku a asociace, do které byl snímek přiřazen pomocí formální definice. Pokud přiřazen nebyl, nezobrazí se žádná asociace. Snímek může být přiřazen i do více než jedné asociace. Při použití plné verze expertního systému se do tabulky vypíší asociace v pořadí klesající podobnosti ke snímku, a to u těch snímků, které nebyly přiřazeny do žádné asociace nebo byly přiřazeny do více než jedné asociace.</li> <li>Při klasifikaci více snímků se do záhlaví tabulky vepíší kódy asociací u těch snímků, které se přiřadily na základě formálních definic. Převod kódů na jména asociací lze dohledat v tištěné verzi <em>Vegetace České republiky</em>, v její online verzi (<a href="https://pladias.cz/en/vegetation/">https://pladias.cz/vegetation/</a>) nebo v textovém souboru expertního systému. U snímků, které se nepřiřadily k žádné asociaci, se v záhlaví zobrazí znak ?. U snímků přiřazených do více než jedné asociace se zobrazí znak +. Při použití plné verze expertního systému se do tabulky vypíší nejpodobnější asociace u těch snímků, které nebyly přiřazeny do žádné asociace nebo byly přiřazeny do více než jedné asociace.</li> <li>Expertní systém běžně přiřazuje pomocí formálních definic některé snímky v porostu nebo lokálně rozlišovaném rostlinném společenstvu do určité asociace a jiné do žádné asociace, což znamená, že se porost skládá z míst s druhovým složením typickým pro danou asociaci a míst s méně typickým druhovým složením. Pokud expertní systém přiřadí různé snímky z jednoho relativně homogenního porostu k různým asociacím, je vhodné porost interpretovat jako přechodný mezi těmito asociacemi.</li> </ol> <p>Tato elektronická publikace expertního systému CzechVeg-ESy byla podpořena Grantovou agenturou České republiky (grant 17-15168S).</p>
2019-2020 woody plants pollen dataset from automatic particle detector in Šiauliai
<p>Dataset acquired from Rapid-E device by testing it with anemophilous woody plants pollen collected in Lithuania. Data is sorted by pollen type.</p> <p>The sampling methodology can be found in publication "Automatic pollen recognition with the Rapid-E particle counter: the first-level procedure, experience and next steps", Šaulienė Ingrida, et al. Atmospheric Measurement Techniques, 2019, 12.6: 3435-3452. <a href="https://doi.org/10.5194/amt-12-3435-2019">https://doi.org/10.5194/amt-12-3435-2019</a></p> <p>The authors would like to hear from you at realtime@sa.vu.lt if you use this dataset.</p>
2019-2020 herbaceous plants pollen dataset from automatic particle detector in Šiauliai
<p>Dataset acquired from Rapid-E device by testing it with anemophilous herbaceous plant pollen collected in Lithuania. Data is sorted by pollen type.</p> <p>The sampling methodology can be found in publication "Automatic pollen recognition with the Rapid-E particle counter: the first-level procedure, experience and next steps", Šaulienė Ingrida, et al. Atmospheric Measurement Techniques, 2019, 12.6: 3435-3452. <a href="https://doi.org/10.5194/amt-12-3435-2019">https://doi.org/10.5194/amt-12-3435-2019</a></p> <p>The authors would like to hear from you at realtime@sa.vu.lt if you use this dataset.</p>
Transcribing audio data: overview and transcripts of several automatic transcription tools
<p>Throughout institutions, audio recordings are being made regularly. To be able to further process these recordings, the audio often needs to be transcribed. In order to avoid having to transcribe the audio manually, there is a wealth of tools available for doing so automatically. In this record, we present an overview of several often-used tools to automatically transcribe pre-recorded audio data, including their features, costs, and security.</p> <p>To check the quality of the tool, we also recorded an audio fragment in Dutch that we ran through all tools in this overview in March of 2022. This original audio fragment (Test_interview_20220203.mp3), the cleaned-up transcription (Test_interview_cleaned_transcript.odt) and each tool’s raw transcript of the audio fragment (Test_interview_[name-tool]_raw_[date-run]) are included in this record as well. The raw transcripts were downloaded as .docx or .txt files and the .docx files saved as .odt. No edits to the transcripts were made before saving them, except an incidental removal of a personal email address or hyperlink.</p> <p>The overview contains information and transcripts of following transcription tools:</p> <ul> <li>Amberscript</li> <li>HappyScribe</li> <li>Kaldi</li> <li>NVIVO transcription</li> <li>Sonix</li> <li>SpokenOnline</li> <li>Transcribe</li> <li>Trint</li> <li>Microsoft Word 365 Online</li> </ul> <p><strong>About</strong></p> <p>This overview was created through a collaboration between Utrecht University’s Research Data Management (RDM) Support and the <a href="https://datahub.sites.uu.nl/">DataHub SSH</a> programme situated at the faculty of Humanities.</p> <p>The details in the overview have last been updated April 19, 2022. Please note that at the time you are downloading these files, the quality of the (Dutch) speech-to-text conversion may have been improved by the respective supplier.</p>
Supplementary materials to the paper: Automatic Parameters Tuning of Late Reverberation Algorithms for Audio Augmented Reality
<p>Supplementary materials to the paper:</p> <blockquote> <p>Riccardo Bona, Davide Fantini, Giorgio Presti, Marco Tiraboschi, Isaac Engel and Federico Avanzini. 2022. Automatic Parameters Tuning of Late Reverberation Algorithms for Audio Augmented Reality. In <em>Proceedings of International Conference on Audio Mostly</em>.</p> </blockquote> <p>The supplementary materials include the reverberated audio stimuli employed in the MUSHRA listening test reported in the paper. For each type of audio stimuli (Drums, Sax and Speech) the version reverberated with each of the six target Room Impulse Responses (RIRs) is provided along with the versions reverberated using the reverb matching method proposed in the paper (two different artificial reverberators have been considered: FDN and Freeverb).</p> <p>Further, the reverberation times (<span class="math-tex">\(T_{20}\)</span>) per octave band for each considered RIR are provided.</p>
ATEPP: A Dataset of Automatically Transcribed Expressive Piano Performance
<p>ATEPP is a dataset of expressive piano performances by virtuoso pianists. The dataset contains 11742 11677 performances (~1000 hours) by 49 pianists and covers 1580 movements by 25 composers. All of the MIDI files in the dataset come from the piano transcription of existing audio recordings of piano performances. Scores in MusicXML format are also available for around half of the tracks. The dataset is organized and aligned by compositions and movements for comparative studies. For more details, please check <a href="https://github.com/BetsyTang/ATEPP">here</a>. </p>
VSR Databases used in article "Standardization of noisy volcano-seismic waveforms as a key step towards station-independent, robust automatic recognition"
<p>This dataset contains required volcano-seismic waveform DBs (<em>dec.95M.16c</em> and <em>dec.09U.4c</em>) used in the article:</p> <p>"<em>Standardization of noisy volcano-seismic waveforms as a key step towards station-independent, robust automatic recognition</em>",</p> <p>published in the Seismological Research Letters (<a href="https://doi.org/10.1785/0220180334">https://doi.org/10.1785/0220180334</a>). The authors want to thank everyone at the Instituto Andaluz of Geofísica (<a href="http://iagpds.ugr.es">http://iagpds.ugr.es</a>), precisely to Prof. Jesús Ibáñez and Dr. Javier Almendros, IPs of several research projects which </p> <p>have made possible the monitoring of Deception Island since early 1990s.</p> <p>This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No.[749249] (VULCAN.ears).</p>
An automatic fascicle tracking algorithm quantifying gastrocnemius architecture during maximal effort contractions
<p>This repository includes all the experimental data, tracking code, and tracked trials reported in Drazan JF, Hullfish TJ, Baxter JR. 2019. An automatic fascicle tracking algorithm quantifying gastrocnemius architecture during maximal effort contractions. <em>PeerJ</em> 7:e7120. DOI: <a href="https://doi.org/10.7717/peerj.7120">10.7717/peerj.7120</a>.</p> <p>Updated tracking code will be maintained on github https://github.com/joshrbaxter/ultrasound_tracking</p> <p>To get started - download the 'matlab' and 'Sample Videos' folders and unzip them into a common directory. If you are having path issues (will first appear when trying to pull the Data structure), then these folders are either in the wrong path or the path separators are incorrect (this was developed on Windows and linux/OSX use a different path format). </p>
The Open Review–Based (ORB) dataset: Towards Automatic Assessment of Scientific Papers and Experiment Proposals in High–Energy Physics
<p>We introduce the new comprehensive Open Review–Based dataset (ORB); it includes a curated list of more than 62,000 scientific papers, publications and submitted preprints with their more than 157,000 reviews and final decisions. We gather this information from three peer-reviewed sources: the OpenReview.net, SciPost.org and PeerJ.com websites.</p>
Air temperature measurements from Automatic Weather Station (AWS) at Freiburg – Chemiehochhaus (FRCHEM) from 2019-01-01 to 2019-12-31 [L2]
<p>Quality controlled and gap-filled continuous air temperature data from the urban rooftop weather station at Freiburg-Chemiehochhaus (FRCHEM, 7.8486ºE, 48.0011ºN, 323.5 m) using an actively ventillated and shielded psychrometer operated 2m above roof level.</p> <ul> <li>Quality controlled air temperature data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2019.</li> <li>Average, minimum and maximum air temperatures are provided on hourly, daily, monthly and annual scales.</li> <li>Characteristic hours and days are reported on daily, monthly and annual scales (e.g. summer days with T_max > 25ºC, hot days with T_max > 30º, desert days with T_max > 35ºC, tropical nights with T_min > 20°, frost days with T_min < 0ºC and ice days with T_max < 0ºC, all based on 00:00 - 24:00 UTC).</li> <li>Detailed information on gap-filled data is provided.</li> <li>Note: All times are provided in UTC, not local time.</li> </ul> <p>For more details read `FRCHEM_2019_AirTemperature_MetaData.txt`.</p> <p>Version 1.1.0 contains additionally air temperature data aggregated at 10min and 30min.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.