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1 result for “back pain, SMR-HEIDI”

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Tables S2-S3. SMR-HEIDI results for 8q24.21 locus between back pain and other phenotypes.

<p><strong>Supplementary Table S2. SMR-HEIDI results for 8q24.21 locus between back pain and other complex traits. </strong></p> <p><strong>Column headers of Tables S2:</strong></p> <p>Secondary Trait Name: Name of complex trait<br> Dataset: Name of dataset (UKB Neale&#39;s lab or UKB Gene Atlas)<br> Index_SNP: RsID of SNP used as target in SMR-HEID analysis<br> Proxy_SNP: RsID of top SNP in the selected locus - SNP presented in both GWAS data with minimum P-values in back pain GWAS<br> r(proxy_SNP,index_SNP): linkage disequilibrium coefficient&nbsp; between index and proxy SNP<br> beta_SMR: Beta SMR for proxy SNP<br> p_SMR: P-value of beta SMR<br> qFDR-BH SMR:&nbsp; P-value of beta SMR after Bonferroni correction<br> p_HEIDI: P-value of HEIDI test<br> n_HEIDI: Number of SNPs used in HEIDI test<br> SNPs_HEIDI: List of rsID of SNPs used in HEIDI test</p> <p>&nbsp;</p> <p><strong>Supplementary Table S3.</strong> <strong>SMR-HEIDI results for 8q24.21 locus between back pain and expression of genes.</strong></p> <p><strong>Column headers of Tables S3:</strong></p> <p>Secondary Trait Name: Name of complex trait<br> Tissue: Name of the tissue from which the samples were taken to study gene expression<br> Gene_name: Gene name corresponding to the transcript name<br> Transcript Name: Transcript name (ID)<br> Dataset: Name of dataset (CEDAR, GTEx_v6)<br> beta_SMR: Beta SMR for proxy SNP<br> p_SMR: P-value of beta SMR<br> qFDR-BH SMR: P-value of beta SMR after Bonferroni correction<br> p_HEIDI: P-value of HEIDI test<br> n_HEIDI: Number of SNPs used in HEIDI test<br> SNPs_HEIDI: List of rsID of SNPs used in HEIDI test</p> <p>&nbsp;</p> <p>Part of the article: Williams FMK et al. &quot;Sequence variation at 8q24.21 and risk of back pain&quot;</p>

opencc-by-4.0Mar 2020View details →

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