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13 results for “benchmark dose”
Reference Dataset for Benchmarking Organ Doses Derived from Monte Carlo Simulations of CT Exams
<p>This reference dataset contains CT scanner x-ray source characteristics, filtration profile, de-identified patient image data and size characteristics, voxelized patient models, exam characteristics, x-ray tube current data, and organ dose results in tabular form from Monte Carlo (MC) simulations of abdominal/pelvis CT exams of pregnant patients. This dataset can be used for benchmarking MC simulation codes for CT dosimetry.</p>
Repository of posterior distributions from Bayesian benchmark dose analysis
<p>This repository contains posterior distributions for all model parameters obtained from analysis of continuous dose-response studies.</p>
A database for benchmarking organ dose estimates and uncertainties in CT
<p>This database includes patient images and associated verified Monte Carlo based estimates of organ doses that may be used for benchmarking different organ dose estimation techniques against a reference standard.</p>
LoDoInd: A Benchmark Low-dose Industrial CT Dataset - 1 of 3
<h2>Summary</h2> <p>This dataset accompanies the paper "LoDoInd: Introducing A Benchmark Low-dose Industrial CT Dataset and Enhancing Denoising with 2.5D Deep Learning Techniques". We are releasing the dataset with five different dose levels, including a reference set. All datasets are pre-registered, making them immediately suitable for deep learning applications in industrial CT.</p> <h2>Description</h2> <p>The uploaded content includes reconstructed images for noise levels 1 and 2. Each level comprises 4000 slices, with each slice being 1250x1250 pixels. Due to the 50 GB space limitation per submission on Zenodo, the rest of the dataset is available through separate links listed below:</p> <ul> <li>Noise1 and Noise2 (this one) <a href="../records/10356955" target="_blank" rel="noopener">https://zenodo.org/records/10356955</a></li> <li>Noise3 and Noise4 <a href="../records/10391277" target="_blank" rel="noopener">https://zenodo.org/records/10391277</a></li> <li>Noise5 and Reference <a href="../records/10391412" target="_blank" rel="noopener">https://zenodo.org/records/10391412</a></li> </ul> <p>The scanning parameters for all noise levels are summarized in the table below:</p> <table> <tbody> <tr> <td> </td> <td>Averaged Projs</td> <td>Exposure Time/ms</td> <td>Scan Time/min</td> <td>Voltage/kV</td> <td>Current/uA</td> </tr> <tr> <td>Reference</td> <td>6</td> <td>333</td> <td>59.3</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 1</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 2</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>90</td> </tr> <tr> <td>Noise Level 3</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>45</td> </tr> <tr> <td>Noise Level 4</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>23</td> </tr> <tr> <td>Noise Level 5</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>12</td> </tr> </tbody> </table> <h2>Additional link</h2> <p>The code for supervised learning-based denoising is available <a href="https://github.com/jiayangshi/LoDoInd">code</a> .</p> <h2>Acknowledgment</h2> <p>This research was co-financed by the European Union H2020-MSCA-ITN-2020 under grant agreement no. 956172 (xCTing). </p>
LoDoInd: A Benchmark Low-dose Industrial CT Dataset - 3 of 3
<h2>Summary</h2> <p>This dataset accompanies the paper "LoDoInd: Introducing A Benchmark Low-dose Industrial CT Dataset and Enhancing Denoising with 2.5D Deep Learning Techniques". We are releasing the dataset with five different dose levels, including a reference set. All datasets are pre-registered, making them immediately suitable for deep learning applications in industrial CT.</p> <h2>Description</h2> <p>The uploaded content includes reconstructed images for noise levels 5 and reference. Each level comprises 4000 slices, with each slice being 1250x1250 pixels. Due to the 50 GB space limitation per submission on Zenodo, the rest of the dataset is available through separate links listed below:</p> <ul> <li>Noise1 and Noise2 <a href="../records/10356955" target="_blank" rel="noopener">https://zenodo.org/records/10356955</a></li> <li>Noise3 and Noise4 <a href="../records/10391277" target="_blank" rel="noopener">https://zenodo.org/records/10391277</a></li> <li>Noise5 and Reference (this one) <a href="../records/10391412" target="_blank" rel="noopener">https://zenodo.org/records/10391412</a></li> </ul> <p>The scanning parameters for all noise levels are summarized in the table below:</p> <table> <tbody> <tr> <td> </td> <td>Averaged Projs</td> <td>Exposure Time/ms</td> <td>Scan Time/min</td> <td>Voltage/kV</td> <td>Current/uA</td> </tr> <tr> <td>Reference</td> <td>6</td> <td>333</td> <td>59.3</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 1</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 2</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>90</td> </tr> <tr> <td>Noise Level 3</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>45</td> </tr> <tr> <td>Noise Level 4</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>23</td> </tr> <tr> <td>Noise Level 5</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>12</td> </tr> </tbody> </table> <h2>Additional link</h2> <p>The code for supervised learning-based denoising is available <a href="https://github.com/jiayangshi/LoDoInd">code</a> .</p> <h2>Acknowledgment</h2> <p>This research was co-financed by the European Union H2020-MSCA-ITN-2020 under grant agreement no. 956172 (xCTing). </p>
LoDoInd: A Benchmark Low-dose Industrial CT Dataset - 2 of 3
<h2>Summary</h2> <p>This dataset accompanies the paper "LoDoInd: Introducing A Benchmark Low-dose Industrial CT Dataset and Enhancing Denoising with 2.5D Deep Learning Techniques". We are releasing the dataset with five different dose levels, including a reference set. All datasets are pre-registered, making them immediately suitable for deep learning applications in industrial CT.</p> <h2>Description</h2> <p>The uploaded content includes reconstructed images for noise levels 3 and 4. Each level comprises 4000 slices, with each slice being 1250x1250 pixels. Due to the 50 GB space limitation per submission on Zenodo, the rest of the dataset is available through separate links listed below:</p> <ul> <li>Noise1 and Noise2 <a href="../records/10356955" target="_blank" rel="noopener">https://zenodo.org/records/10356955</a></li> <li>Noise3 and Noise4 (this one) <a href="../records/10391277" target="_blank" rel="noopener">https://zenodo.org/records/10391277</a></li> <li>Noise5 and Reference <a href="../records/10391412" target="_blank" rel="noopener">https://zenodo.org/records/10391412</a></li> </ul> <p>The scanning parameters for all noise levels are summarized in the table below:</p> <table> <tbody> <tr> <td> </td> <td>Averaged Projs</td> <td>Exposure Time/ms</td> <td>Scan Time/min</td> <td>Voltage/kV</td> <td>Current/uA</td> </tr> <tr> <td>Reference</td> <td>6</td> <td>333</td> <td>59.3</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 1</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>180</td> </tr> <tr> <td>Noise Level 2</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>90</td> </tr> <tr> <td>Noise Level 3</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>45</td> </tr> <tr> <td>Noise Level 4</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>23</td> </tr> <tr> <td>Noise Level 5</td> <td>1</td> <td>333</td> <td>9.9</td> <td>140</td> <td>12</td> </tr> </tbody> </table> <h2>Additional link</h2> <p>The code for supervised learning-based denoising is available <a href="https://github.com/jiayangshi/LoDoInd">code</a> .</p> <h2>Acknowledgment</h2> <p>This research was co-financed by the European Union H2020-MSCA-ITN-2020 under grant agreement no. 956172 (xCTing). </p>
Identifying suitable experimental designs to determining differentially expressed genes and benchmark doses from transcriptomic dose-response studies in zebrafish embryos
GEO Series GSE230213. Danio rerio. 96 samples. Type: Expression profiling by high throughput sequencing.
Benchmark Dose Modeling Approaches for Volatile Organic Chemicals using a Novel Air-Liquid Interface In Vitro Exposure System
GEO Series GSE199794. Homo sapiens. 555 samples. Type: Expression profiling by high throughput sequencing.
Assessing the toxicity of 17α-ethinylestradiol in rainbow trout using a four-day transcriptomics benchmark dose (BMD) embryo assay
GEO Series GSE171788. Oncorhynchus mykiss. 18 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic effects of tributyltin (TBT) in zebrafish eleutheroembryos. A functional benchmark dose analysis.
GEO Series GSE139599. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
Evaluation of 5-Day In Vivo Rat Liver and Kidney with High-Throughput Transcriptomics for Estimating Benchmark Doses of Apical Outcomes
GEO Series GSE147072. Rattus norvegicus. 1652 samples. Type: Expression profiling by high throughput sequencing.
Adverse outcome pathways of ionizing radiation investigated with multi-omics and benchmark dose modeling
GEO Series GSE260589. Homo sapiens. 278 samples. Type: Expression profiling by high throughput sequencing.
A Pathway Analysis, Connectivity Mapping and Transcriptional Benchmark Dosing Based Exploration of Oxidative Stress Mediated Genetic Toxicology Modes of Actions
GEO Series GSE287194. Homo sapiens. 330 samples. Type: Expression profiling by array.
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International Brain Laboratory public data
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OpenNeuro
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