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A biodiversity dataset graph: Biological Associations in TaxonWorks hash://sha256/e4a47c067d6c125da60c9a1b92b5eecdea539cb8666cd3aed99db347ae5b8ed0 hash://md5/686007de79cc2a49ab23fd3debe56e3f
<p>The intended use of this archive is to facilitate (meta-)analysis of Biological Associations captured in TaxonWorks [1]. TaxonWorks is an integrated web-based workbench for taxonomists and biodiversity scientists. It allows you to capture, organize, and enrich your data; share it with collaborators; and package it for analysis and publication. </p> <p>This dataset provides versioned snapshots of the TaxonWorks network as tracked by Preston [2,3,4] during 2024-05-07 using:</p> <pre><code>preston track -u https://sfg.taxonworks.org</code></pre> <p>. In addition, this dataset provides a processed version of the biological associations using the "preston tw-stream" command as generated by the following bash script:</p> <pre><code>#!/bin/bash # # Generates GloBI interaction JSON Lines from provided provenance log as generated by preston tw-stream. # /usr/local/bin/preston cat hash://sha256/c1b081afa6ea0f60570c24cca85c4d9acd91eeefe36b9cacd1fe53b6893ea154\ | /usr/local/bin/preston tw-stream </code></pre> <p><br>The script itself was executed using:</p> <pre><code>cat transform.sh | preston bash </code></pre> <p>The execution of this transform.sh script (with content id hash://sha256/6dfe3c4ebf877bed73aebbe88c7d388bf894c569578ed7b28ca68e57a6afe43b), as well as their results, is captured within this datasets also. A rdf/quads formatted machine readable version of the workflow execution description can be found via:</p> <pre><code>preston cat hash://sha256/e4a47c067d6c125da60c9a1b92b5eecdea539cb8666cd3aed99db347ae5b8ed0 </code></pre> <p>And, the resulting JSON Lines file has content id (or signature) hash://sha256/4c2b8642251ced5985660d63c565efa6e5a9bf3d12b3b0c0d9ac577905f5e897 and is also included as interactions.json to facilitate access. </p> <p>The first json record can be generated using:</p> <pre><code>preston cat hash://sha256/4c2b8642251ced5985660d63c565efa6e5a9bf3d12b3b0c0d9ac577905f5e897\ | head -n1\ | jq . </code></pre> <p>or, provided that the interactions.json has content id starting with hash://sha256/4c2b86...</p> <pre><code>cat interactions.json\ | head -n1\ | jq . </code></pre> <p>This produces the following (formatted) json object:</p> <pre><code>{<br> "http://www.w3.org/ns/prov#wasDerivedFrom": "hash://sha256/fdbf13dc5f3d9c5afbc03db62699e2ce2724c499b7d91d8b0bf31e39409b153a",<br> "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "application/vnd.taxonworks+json",<br> "referenceId": "https://sfg.taxonworks.org/api/v1/sources/213218",<br> "interactionId": "https://sfg.taxonworks.org/api/v1/biological_associations/227664",<br> "taxonRootsResolved": 2,<br> "referenceResolved": true,<br> "referenceCitation": "@article{213218,\n author = {Monzen, Kota},\n journal = {Annual Report of the Gakugei Faculty of the Iwate University},\n pages = {24-38},\n title = {Revision of the Japanese gall wasps with the descriptions of new genus, subgenus, species and subspecies (II). Cynipidae (Cynipinae) Hymenoptera.},\n volume = {6},\n year = {1954}\n}\n",<br> "interactionTypeId": "gid://taxon-works/BiologicalRelationship/69",<br> "interactionTypeName": "gall",<br> "sourceTaxonName": "Neuroterus hakonensis",<br> "sourceTaxonId": "gid://taxon-works/TaxonName/1174121",<br> "sourceTaxonRank": "species",<br> "sourceTaxonAuthorship": "Ashmead, 1904",<br> "sourceTaxonPath": "Root | Cynipidae | Neuroterus | Neuroterus hakonensis",<br> "sourceTaxonPathIds": "gid://taxon-works/TaxonName/623170 | gid://taxon-works/TaxonName/1170060 | gid://taxon-works/TaxonName/1170097 | gid://taxon-works/TaxonName/1174121",<br> "sourceTaxonPathNames": "nomenclatural rank | family | genus | species",<br> "targetTaxonName": "Quercus",<br> "targetTaxonId": "gid://taxon-works/TaxonName/1173543",<br> "targetTaxonRank": "genus",<br> "targetTaxonAuthorship": "",<br> "targetTaxonPath": "Root | Fagaceae | Quercus",<br> "targetTaxonPathIds": "gid://taxon-works/TaxonName/623170 | gid://taxon-works/TaxonName/1173542 | gid://taxon-works/TaxonName/1173543",<br> "targetTaxonPathNames": "nomenclatural rank | family | genus"<br>}<br></code></pre> <p>In this example, a claim is made that, according to https://sfg.taxonworks.org/api/v1/sources/213218 [6] Neuroterus hakonensis (a gall wasp) has a primary host in the genus of Quercus (oak tree). </p> <p>In total, 237,068 such claims can be found in the generated resource with alias interactions.json and content id starting with hash://sha256/4c2b86... .</p> <p>In addition, the archive preston.tar.gz to allow for batch download. The archive contains three types of files: index files, provenance logs and data files. In addition, index files have been individually included in this dataset publication to facilitate remote access. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the TaxonWorks content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 . </p> <p>To retrieve and verify the downloaded TaxonWorks biodiversity dataset graph, download preston.tar.gz. Then, extract the archive into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using:</p> <pre><code>java -jar preston.jar clone --remote https://zenodo.org/record/11151783/files </code></pre> <p>After that, verify the index of the archive by reproducing the following provenance log history:</p> <pre><code> java -jar preston.jar history --log tsv</code></pre> <p>to be:</p> <pre><code>hash://sha256/e4a47c067d6c125da60c9a1b92b5eecdea539cb8666cd3aed99db347ae5b8ed0 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/c1b081afa6ea0f60570c24cca85c4d9acd91eeefe36b9cacd1fe53b6893ea154 </code><br><code>hash://sha256/c1b081afa6ea0f60570c24cca85c4d9acd91eeefe36b9cacd1fe53b6893ea154 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/a4d651aac5220487835e6178511886e98b845b2d98cb7c5447fb2b042e0654d2hash://sha256/a4d651aac5220487835e6178511886e98b845b2d98cb7c5447fb2b042e0654d2 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ab7550368905e7c919e70a306efbb97719a1edbba2cfe4c4515f635ebc0be4bb hash://sha256/a4d651aac5220487835e6178511886e98b845b2d98cb7c5447fb2b042e0654d2 http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ab7550368905e7c919e70a306efbb97719a1edbba2cfe4c4515f635ebc0be4bb</code><br><code>hash://sha256/ab7550368905e7c919e70a306efbb97719a1edbba2cfe4c4515f635ebc0be4bb http://www.w3.org/ns/prov#wasDerivedFrom hash://sha256/ff5e709305e593c87711e897b6341b94e775e2f312aa6d4ae5ed6120babd6f5e urn:uuid:0659a54f-b713-4f86-a917-5be166a14110 http://purl.org/pav/hasVersion hash://sha256/ff5e709305e593c87711e897b6341b94e775e2f312aa6d4ae5ed6120babd6f5e </code></pre> <p><br>To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.</p> <pre><code>java -jar preston.jar verify</code></pre> <p>Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". </p> <p>Files in this data publication:</p> <p>--- start of file descriptions ---</p> <p>-- description of archive and its contents (a rendition of this file) --<br>README</p> <p>-- biological associations indexed from TaxonWorks expressed in a GloBI [5] compatible JSON Lines file --<br>interactions.json</p> <p>-- first 10 biological associations indexed from TaxonWorks expressed in a GloBI [5] compatible JSON Lines file --<br>interactions-10.json</p> <p>-- executable java jar containing preston [2,3,4] v0.8.5-SNAPSHOT. --<br>preston.jar</p> <p>-- preston archive containing TaxonWorks data files, associated provenance logs and a provenance index --<br>preston.tar.gz</p> <p>-- individual provenance index files --</p> <p>1fed32bf78298d7ecc3d9f36d106f1d7d7773a8b9a5e47af6632f36c1f82adb5<br>29306c5c144c3d7fd21be344d8b6b554b6f6efa3b8f8f5c0b27cdf0e88785652<br>2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a<br>d31ff1ef1dea88c5952181a4f30e7ea7862873aa5f66430451275aa6d08d329e<br>deb84d69224af488da585186f88cafc58e978db5f9897de624cc9b02c0c83742<br>e9c34683f1e826f68f841f3419bd5ee9c0fa18be04713a6fd3364f226c7c5f2f<br>f98d36a9dc7bd833c93b3b61130865628f7bc2f7bb0920e95afcd16fba3dc6a8<br>ffb41d48979ceb964fbfbeb68cb60b584b759950087fdcc012521b866249bc39</p> <p>--- end of file descriptions ---</p> <p>This work is funded in part by grant NSF OAC 1839201, NSF DBI 1901932, NSF DBI 1901926, and NSF DBI 2102006 from the National Science Foundation.<br> </p>
Environmental and biological data associated with captive-reared Delta Smelt Study, Sacramento-San Joaquin Delta, CA, January-March 2019
The endangered Delta Smelt Hypomesus transpacificus is an osmerid fish endemic to the upper San Francisco Estuary. A captive breeding program for the species led by the Fish Culture and Conservation Laboratory (FCCL), University of California, Davis, began in 1996 to create a refuge population. In order to better understand how captive Delta Smelt would fare in conditions outside of the hatchery, we placed captive-reared fish in enclosures in the Sacramento San-Joaquin Delta, and evaluated their ability to survive, feed, and maintain condition. Fish were acclimated in the hatchery at FCCL, tagged, swabbed, weighed, measured, and transferred to enclosures in the field. There were three types of enclosures (n=2 for each type), varying in mesh size and wrap condition. In January 2019, 384 adult Delta Smelt (243 days post hatch) were transferred to enclosures in Rio Vista. In February 2019, 360 adult Delta Smelt (278 days post hatch) were transferred to enclosures in the Deepwater Shipping Channel. For each deployment, fish remained in enclosures for approximately one month, then were retrieved from enclosures, euthanized, identified, weighed and measured. A subset were also analyzed for diet contents. During the one-month long deployments, cages were checked for biofouling, damage, and dead fish, and water quality measurements and zooplankton samples were collected.
Brain Ages Derived from Different MRI Modalities are Associated with Distinct Biological Phenotypes
<p><strong>Abstract</strong></p> <p>Brain ageing is a highly variable, spatially and temporally heterogeneous process, marked by numerous structural and functional changes. These can cause discrepancies between individuals’ chronological age and the apparent age of their brain, as inferred from neuroimaging data. Machine learning models, and particularly Convolutional Neural Networks (CNNs), have proven adept in capturing patterns relating to ageing induced changes in the brain. The differences between the predicted and chronological ages, referred to as brain age deltas, have emerged as useful biomarkers for exploring those factors which promote accelerated ageing or resilience, such as pathologies or lifestyle factors. However, previous studies rely only on structural neuroimaging for predictions, overlooking potentially informative functional and microstructural changes. Here we show that multiple contrasts derived from different MRI modalities can predict brain age, each encoding bespoke brain ageing information. By using 3D CNNs and UK Biobank data, we found that 57 contrasts derived from structural, susceptibility-weighted, diffusion, and functional MRI can successfully predict brain age. For each contrast, different patterns of association with non-imaging phenotypes were found, resulting in a total of 191 unique, statistically significant associations. Furthermore, we found that ensembling data from multiple contrasts results in both higher prediction accuracies and stronger correlations to non-imaging measurements. Our results demonstrate that other 3D contrasts and modalities, which have not been considered so far for the task of brain age prediction, encode different information about the ageing brain. We envision our work as being the starting point for future investigations into the causal links underpinning the observed brain age deltas and non-imaging measurement associations. For instance, drug effects can be monitored, given that certain medications correlated with accelerated brain ageing. Furthermore, continued development of brain age models could facilitate their deployment in clinical trials for recruitment and monitoring, and hospitals for diagnostic and screening tasks.</p> <p><strong>Data Description</strong></p> <p>This dataset contains the full correlation results with all nIDPs in the UK Biobank. These are presented in datasets split by sex in Female and Male subjects. For easier data manipulation, two smaller datasets have also been made available, containing just those correlation which pass the False Discovery Rate (FDR) threshold. </p> <p>As experiments were also conducted for ensembles using multiple contrasts, similar datasets are provided for those.</p> <p>Finally, global datasets are also provided. These are the concatenation of the associations contained in the Male and Female datasets.</p> <p><strong>Paper & Code</strong></p> <p>The original paper for this article can be accessed here:</p> <ul> <li><a href="https://ieeexplore.ieee.org/abstract/document/10196736">https://ieeexplore.ieee.org/abstract/document/10196736</a></li> </ul> <p>To access the codes relevant for this project, please access the project GitHub Repos:</p> <ul> <li><a href="https://github.com/AndreiRoibu/AgeMapper">https://github.com/AndreiRoibu/AgeMapper</a></li> </ul> <p>If using this work, please cite it based on the above paper, or using the following BibTex:</p> <pre><code class="language-markdown">@inproceedings{roibu2023brain, title={Brain Ages Derived from Different MRI Modalities are Associated with Distinct Biological Phenotypes}, author={Roibu, Andrei-Claudiu and Adaszewski, Stanislaw and Schindler, Torsten and Smith, Stephen M and Namburete, Ana IL and Lange, Frederik J}, booktitle={2023 10th IEEE Swiss Conference on Data Science (SDS)}, pages={17--25}, year={2023}, organization={IEEE}, doi={10.1109/SDS57534.2023.00010} }</code></pre> <p> </p> <p><strong>Data Access</strong></p> <p>The data for this project is freely available upon application at the UK Biobank. For more information regarding the individual nIDPs, please access the UK Biobank Showcase website at: https://biobank.ctsu.ox.ac.uk/showcase/search.cgi</p> <p><strong>Funding</strong></p> <p>ACR is supported by EPSRC Grant EP/S024093/1, F. Hoffmann-La Roche AG and a 2021 Industrial Fellowship offered by the Royal Commission for the Exhibition of 1851. SMS is supported by a Wellcome Trust Collaborative Award 215573/Z/19/Z. AILN is grateful for support from the Academy of Medical Sciences under the Springboard Awards scheme (SBF005/1136), and the Bill and Melinda Gates Foundation. FJL is supported by a Wellcome Trust Collaborative Award (215573/Z/19/Z). The WIN is supported by core funding from the Wellcome Trust (203139/Z/16/Z). The computational aspects were supported by the Wellcome Trust (203141/Z/16/Z) and the NIHR Oxford BRC. Corresponding authors: ACR (andreiroibu@icloud.com), SA (stanislaw.adaszewski@roche.com) and AILN (ana.namburete@cs.ox.ac.uk).</p>
Figure 15a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 15a. - Neoempheriapuncticoxa Edwards, 1940.Figure 15a.Female pupal exuvia (lateral).Figure 15b.Larva intersegmental areas with creeping welts bearing rows of denticles. <br> Female pupal exuvia (lateral).
Figure 15b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 15b. - Neoempheriapuncticoxa Edwards, 1940.Figure 15a.Female pupal exuvia (lateral).Figure 15b.Larva intersegmental areas with creeping welts bearing rows of denticles. <br> Larva intersegmental areas with creeping welts bearing rows of denticles.
Figure 13. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 13. - Neoempheriapuncticoxa Edwards, 1940. Female pupa hanging in its own silk (ventrolateral).
Figure 14a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 14a. - Neoempheriapuncticoxa Edwards, 1940.Figure 14a.Male pupal exuvia (ventral).Figure 14b.Male imago (dorsolateral). <br> Male pupal exuvia (ventral).
Figure 12c. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 12c. - Neoempheriapuncticoxa Edwards, 1940 prepupal larva.Figure 12a.Larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12b.Detail of larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12c.Larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12d.Detail of larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. <br> Larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. Substrate upside down.
Figure 14b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 14b. - Neoempheriapuncticoxa Edwards, 1940.Figure 14a.Male pupal exuvia (ventral).Figure 14b.Male imago (dorsolateral). <br> Male imago (dorsolateral).
Figure 12b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 12b. - Neoempheriapuncticoxa Edwards, 1940 prepupal larva.Figure 12a.Larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12b.Detail of larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12c.Larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12d.Detail of larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. <br> Detail of larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.
Figure 12a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 12a. - Neoempheriapuncticoxa Edwards, 1940 prepupal larva.Figure 12a.Larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12b.Detail of larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12c.Larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12d.Detail of larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. <br> Larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.
Figure 11b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 11b. - Neoempheriapuncticoxa Edwards, 1940 larvae.Figure 11a.Larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae.Figure 11b.Detail of larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae. <br> Detail of larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae.
Figure 10b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 10b. - Neoempheriapuncticoxa Edwards, 1940 host fungus.Figure 10a.Sparassis sp., (Polyporales: Sparassidaceae) fruiting body that larvae of N.puncticoxa were found on in São Paulo.Figure 10b.Ventral view of fruiting body of Polyporaceae where larvae of N.puncticoxa were found in Goiás. <br> Ventral view of fruiting body of Polyporaceae where larvae of N.puncticoxa were found in Goiás.
Figure 11a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 11a. - Neoempheriapuncticoxa Edwards, 1940 larvae.Figure 11a.Larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae.Figure 11b.Detail of larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae. <br> Larvae on ventral face of Goiás fungus, showing webs and slime trails produced by the larvae.
Figure 12d. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 12d. - Neoempheriapuncticoxa Edwards, 1940 prepupal larva.Figure 12a.Larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12b.Detail of larva (pre-pupa), ventral view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12c.Larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. Substrate upside down.Figure 12d.Detail of larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation. <br> Detail of larva (pre-pupa), frontal view, hanging in its own silk in preparation for pupation.
Figure 10a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 10a. - Neoempheriapuncticoxa Edwards, 1940 host fungus.Figure 10a.Sparassis sp., (Polyporales: Sparassidaceae) fruiting body that larvae of N.puncticoxa were found on in São Paulo.Figure 10b.Ventral view of fruiting body of Polyporaceae where larvae of N.puncticoxa were found in Goiás. <br> Sparassis sp., (Polyporales: Sparassidaceae) fruiting body that larvae of N.puncticoxa were found on in São Paulo.
Figure 8b. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 8b. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule.Figure 8a.Ventral view.Figure 8b.Ventral view. <br> Ventral view.
Figure 9. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 9. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule. Ventral view, without the mandible; e – eye; lb – labrum; lp – lateral plate; mp – maxillar papilla; mpl – medium plate; mx – maxilla; mxp – maxillary plate; of – occipital foramen; pmd – premandible.
Figure 8a. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 8a. - Neoempheriapuncticoxa Edwards, 1940 larval head capsule.Figure 8a.Ventral view.Figure 8b.Ventral view. <br> Ventral view.
Figure 5. from: First record of Neoempheria Osten Sacken (Diptera, Mycetophilidae) biology in the Neotropical region, with associations between its larvae and fungi - Biodiversity Data Journal 3: e5073 (08 June 2015) https://doi.org/10.3897/BDJ.3.e5073
Figure 5. - Neoempheriapuncticoxa Edwards, 1940 adult. Male thorax; Ab – abdomen, anp – anepisternum, bas - basisternum, cxI-III – fore-, mid-, and hindcoxae, ha – haltere, ktp – katepisternum, ltg – laterotergite, anp – anepimeron, mep – mesepimeron, mes – metepisternum, mtg – mediotergite, pem – proepimeron, pes – proepisternum, pnt – pronotum, sc – scutum, sctl – scutellum.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.