Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
7
datasets available to search
ShareScore release 0.9.0
Dataset results
7 results for “biological specimen collections”
Fig. 2 in Application of a universal parasite diagnostic test to biological specimens collected from animals
Fig. 2. Cluster dendrogram showing parasite species detected in mammalian hosts. Sequences detected in each specimen using nUPDx were clustered alongside parasite-derived reference sequences of known identity obtained from GenBank. These reference sequences are labelled on the dendrogram branch tips (where appropriate). A peripheral color-coded heat map ring indicates the host animal from which the parasite-derived sequence was detected. Gray branches and blocks on the heat map reflect the position of reference sequences within the tree. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Application of a universal parasite diagnostic test to biological specimens collected from animals
Fig. 1. Schematic describing the nested UPDx protocol employed in this study. This schematic provides a summary of the nested UPDx (nUPDx) protocol originally described by Flaherty et al. (Flaherty et al., 2021). Briefly, the DNA extract is subjected to a restriction digestion using the PstI restriction enzyme, and the digest product is subjected to PCR1 using primers 5'TTGATCCTGC- CAGTAGTCATATGC'3 (outer forward) and 5'GGTGTGTA- CAAAGGGCAGGGAC'3 (outer reverse). The resultant ~2 kb amplicon is digested using the restriction enzymes BamHI and BsoBI. The digest product is then subjected to PCR2 using internal primers 5'CCGGAGAGGGAGCCTGAGA'3 (inner forward) and 5'GAGCTGGAATTACCGCGG'3 (inner reverse) originally described by Flaherty et al. (Flaherty et al., 2018, 2021). The amplicon of PCR2 (~200 base pairs) is finally subjected to Illumina amplicon sequencing.
Fig. 3 in Application of a universal parasite diagnostic test to biological specimens collected from animals
Fig. 3. Cluster dendrogram showing parasite species detected in avian and reptilian hosts. Sequences detected in each specimen using nUPDx were clustered in this dendrogram alongside parasite-derived reference sequences of known identity obtained from GenBank. These reference sequences are labelled on the dendrogram branch tips (where appropriate). A peripheral color-coded heat map ring indicates the host animal from which the parasite-derived sequence was detected. Gray branches and blocks on the heat map reflect the position of reference sequences within the tree. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Sample Collection Registry for Quality Control of Biological and Environmental Specimens and Assay Development and Testing
ClinicalTrials.gov study NCT01087307. IPD Sharing: NO. Countries: 1. Publications: 3.
Linked collectors and determiners for: Lund University Biological Museum - Insect collections Specimens.
Natural history specimen data linked to collectors and determiners held within, "Lund University Biological Museum - Insect collections Specimens". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/b23c2479-214f-4160-9f98-bd3831ab131b">https://bionomia.net/dataset/b23c2479-214f-4160-9f98-bd3831ab131b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/b23c2479-214f-4160-9f98-bd3831ab131b">https://gbif.org/dataset/b23c2479-214f-4160-9f98-bd3831ab131b</a>. Formatted as a Frictionless Data package.
Biological Specimen Collection for Laboratory Methods Development and Training Purposes
ClinicalTrials.gov study NCT00025831. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Collection of Biological Specimens and Associated Health Information
ClinicalTrials.gov study NCT06369441. IPD Sharing: YES. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.