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ShareScore release 0.9.0
Dataset results
2 results for “biomedical text mining”
BioVAE: a pre-trained latent variable language model for biomedical text mining
<p>We release BioVAE, the first large-scale pre-trained latent variable language model for the biomedical domain, which uses the OPTIMUS framework to train on large volumes of biomedical text.</p> <p>This version contains the pre-trained models for text mining tasks such as named entity recognition or relation extraction, and text generation task.</p> <p>Explanation of each file: (lt32: latent_size = 32, beta05: beta=0.5)</p> <ul> <li>pm-full-lt32-beta00</li> <li>pm-full-lt32-beta05</li> <li>pm-full-lt768-beta00</li> <li>pm-full-lt768-beta05</li> <li>pm-full-generation</li> </ul>
Biomedical ELECTRA based deep language representation models for biomedical text mining.
<p>The gzipped tar file contains two biomedical language representation models based on ELECTRA (Clark et al., 2020) deep transformers architecture to be used for down-stream biomedical text mining tasks. </p> <p>Bio-ELECTRA is pre-trained from scratch on PubMed abstracts for 1.8 million steps. Bio-ELECTRA++ is the further pre-trained version of Bio-ELECTRA trained on a corpus of open access full papers from PubMed.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.