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Supplementary material 4 from: Morales-Donoso JA, Vacari GQ, Bernegossi AM, Sandoval EDP, Peres PHF, Galindo DJ, de Thoisy B, Vozdova M, Kubickova S, Barbanti Duarte JM (2023) Revalidation of Passalites Gloger, 1841 for the Amazon brown brocket deer P. nemorivagus (Cuvier, 1817) (Mammalia, Artiodactyla, Cervidae). ZooKeys 1167: 241-264. https://doi.org/10.3897/zookeys.1167.100577
Genetic pairwise Kimura 2 parameter distance of Passalites nemorivagus compared to other Neotropical deer
Supplementary material 3 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Table S3. Cranial measurements of M. americana neotype represented in millimeters
Supplementary material 2 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Table S2. Biometric data of the M. americana neotype
Supplementary material 4 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure S1. Phylogenetic tree of the Cyt-b gene
Figure 9 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 9 Chromosomal evolution showing the relationships of the six cytotypes compared to the M. americana neotype. Juine: 2n = 44/45; Rondônia: 2n = 42/43; Santarém: 2n = 50/51; Jari: 2n = 48/49; Paraná: 2n = 52/53; Carajás: 2n = 50/51; Neotype: 2n = 45 (Adapted from Abril et al. 2010).
Figure 6 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 6 Basic karyotype belonging to the M. americana neotype (2n = 45, FN = 51 + 3Bs) under C-band.
Figure 5 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 5 Basic karyotype belonging to the Mazama americana neotype (2n = 45 FN = 51 + 3Bs) under conventional Giemsa staining.
Figure 8 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 8 Phylogenetic tree from Bayesian inference of the fragments of the concatenated D-Loop and Cyt-b regions. The values represent the posterior probability of the analysis.
Figure 3 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 3 Distance tree (cluster analysis) made with biometric measurements of 39 Mazama americana specimens of various origins compared to the neotype and other Mazama species (M. nemorivaga, M. gouazoubira, M. nana and M. bororo).
Figure 2 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 2 Right lateral (A), left lateral (B), ventral (C) and dorsal (D) views of the skull of the M. americana neotype. Scale illustrates measurement in centimeters.
Figure 1 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 1 Lateral view of the adult male Mazama americana collected in French Guiana and proposed as neotype.
Figure 4 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 4 Distance tree (cluster analysis) made with cranial measurements of different M. americana cytotypes, in parenthesis, found in Brazil (SA-Santarém, JU-Juína, RO-Rondônia, PR-Paraná, CA-Carajás) compared to M. americana neotype and other Mazama species (M. gouazoubira, M. nemorivaga and M. bororo).
Figure 7 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure 7 Basic karyotype belonging to the M. americana neotype (2n = 45 FN = 51 +3 Bs) under G-band and its schematic representation to facilitate future comparisons.
Supplementary material 1 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Table S1. Samples used in this study for genetic analysis
Supplementary material 5 from: Cifuentes-Rincón A, Morales-Donoso JA, Sandoval EDP, Tomazella IM, Mantellatto AMB, de Thoisy B, Duarte JMB (2020) Designation of a neotype for Mazama americana (Artiodactyla, Cervidae) reveals a cryptic new complex of brocket deer species. ZooKeys 958: 143-164. https://doi.org/10.3897/zookeys.958.50300
Figure S2. Phylogenetic tree of the D-Loop gene
Supplementary material 3 from: Morales-Donoso JA, Vacari GQ, Bernegossi AM, Sandoval EDP, Peres PHF, Galindo DJ, de Thoisy B, Vozdova M, Kubickova S, Barbanti Duarte JM (2023) Revalidation of Passalites Gloger, 1841 for the Amazon brown brocket deer P. nemorivagus (Cuvier, 1817) (Mammalia, Artiodactyla, Cervidae). ZooKeys 1167: 241-264. https://doi.org/10.3897/zookeys.1167.100577
Cranial measurements of the Passalites nemorivagus specimen (T359)
Supplementary material 1 from: Morales-Donoso JA, Vacari GQ, Bernegossi AM, Sandoval EDP, Peres PHF, Galindo DJ, de Thoisy B, Vozdova M, Kubickova S, Barbanti Duarte JM (2023) Revalidation of Passalites Gloger, 1841 for the Amazon brown brocket deer P. nemorivagus (Cuvier, 1817) (Mammalia, Artiodactyla, Cervidae). ZooKeys 1167: 241-264. https://doi.org/10.3897/zookeys.1167.100577
List of BAC clones used in Passalites nemorivagus (Cuvier, 1817) topotype
Supplementary material 5 from: Morales-Donoso JA, Vacari GQ, Bernegossi AM, Sandoval EDP, Peres PHF, Galindo DJ, de Thoisy B, Vozdova M, Kubickova S, Barbanti Duarte JM (2023) Revalidation of Passalites Gloger, 1841 for the Amazon brown brocket deer P. nemorivagus (Cuvier, 1817) (Mammalia, Artiodactyla, Cervidae). ZooKeys 1167: 241-264. https://doi.org/10.3897/zookeys.1167.100577
Male Passalites nemorivagus topotype (Cuvier, 1817) collected in French Guiana (T359)
Supplementary material 2 from: Morales-Donoso JA, Vacari GQ, Bernegossi AM, Sandoval EDP, Peres PHF, Galindo DJ, de Thoisy B, Vozdova M, Kubickova S, Barbanti Duarte JM (2023) Revalidation of Passalites Gloger, 1841 for the Amazon brown brocket deer P. nemorivagus (Cuvier, 1817) (Mammalia, Artiodactyla, Cervidae). ZooKeys 1167: 241-264. https://doi.org/10.3897/zookeys.1167.100577
Mitochondrial markers utilized in this study
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