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ShareScore release 0.9.0
Dataset results
17 results for “bulk method”
Source Data for main text and supplemental figures for manuscript "Community assessment of methods to deconvolve cellular composition from bulk gene expression"
<p>Source Data for main text and supplemental figures for manuscript "Community assessment of methods to deconvolve cellular composition from bulk gene expression"</p>
Supplement to the "Response to the Referee" of the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme"
<p>This is the supplement to the "Response to the Referee" of the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme".</p> <p><a href="https://zenodo.org/api/files/87a1c801-d2f8-4c0c-b408-db56481cf97d/Movie%201_w_theta_v_t.mp4">Movie 1_w_theta_v_t.mp4</a>: Time evolution of vertical profiles of buoyancy production and its decomposition.</p> <p><a href="https://zenodo.org/api/files/6eabdd4d-61fd-4f7a-8656-0c9d1fb7ce6f/Movie%202_scatter_w_theta_v_t.mp4">Movie 2_scatter_w_theta_v_t.mp4</a>: Time evolution of scatter plots of w vs theta_v.</p> <p><a href="https://zenodo.org/api/files/6eabdd4d-61fd-4f7a-8656-0c9d1fb7ce6f/Movie%203_boy_incloud_real_z_t.mp4">Movie 3_boy_incloud_real_z_t.mp4</a>: Time evolution of buoyancy production and cloud fraction, and time series of cloud cover.</p> <p><a href="https://zenodo.org/api/files/2f5a17d9-6cb1-4769-88cd-65fd8efd0225/qr_cross.mp4">qr_cross.mp4</a>: Time evolution of cross section of rain water mixing ratio (q<sub>r</sub>) of SDM and SN14 simulation.</p>
Supplement to the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme"
<p>This is a supplement to the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme".</p> <p>The time evolution of horizontal distribution of LWP:</p> <ul> <li>SDM_lwp_2d_sdm.mp4: from nine SDM runs with different grid resolutions.</li> <li>SN14_lwp_2d_sn14.mp4: from nine SN14 runs with different grid resolutions.</li> </ul> <p>The time evolution of vertical profiles:</p> <ul> <li>sdm_profile_t.mp4: from nine SDM runs with different grid resolutions.</li> <li>sn14_profile_t.mp4: from nine SN14 runs with different grid resolutions.</li> <li>sdm_incloud_t.mp4: vertical profiles in cloudy areas and cloud holes in SDM runs.</li> <li>sn14_incloud_t.mp4: vertical profiles in cloudy areas and cloud holes in SN14 runs.</li> <li>sdm_50x5_incloud_t.mp4: comparison between original SDM and SDM without sedimentation.</li> </ul>
Supplementary material 2 from: Majaneva M, Diserud OH, Eagle SHC, Hajibabaei M, Ekrem T (2018) Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples. Metabarcoding and Metagenomics 2: e26664. https://doi.org/10.3897/mbmg.2.26664
Final species table. :
Supplementary material 5 from: Majaneva M, Diserud OH, Eagle SHC, Hajibabaei M, Ekrem T (2018) Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples. Metabarcoding and Metagenomics 2: e26664. https://doi.org/10.3897/mbmg.2.26664
Methods (Scripts) :
Supplementary material 3 from: Majaneva M, Diserud OH, Eagle SHC, Hajibabaei M, Ekrem T (2018) Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples. Metabarcoding and Metagenomics 2: e26664. https://doi.org/10.3897/mbmg.2.26664
Number of reads per sample. :
Supplementary material 4 from: Majaneva M, Diserud OH, Eagle SHC, Hajibabaei M, Ekrem T (2018) Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples. Metabarcoding and Metagenomics 2: e26664. https://doi.org/10.3897/mbmg.2.26664
Diversity analyses. :
Supplementary material 1 from: Majaneva M, Diserud OH, Eagle SHC, Hajibabaei M, Ekrem T (2018) Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples. Metabarcoding and Metagenomics 2: e26664. https://doi.org/10.3897/mbmg.2.26664
Fragment and working PCR conditions. :
Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling [bulk]
GEO Series GSE163787. Mus musculus; Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes [cell mixtures bulk]
GEO Series GSE220605. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes [AML single-cell]
GEO Series GSE220651. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes
GEO Series GSE220608. Homo sapiens. 58 samples. Type: Expression profiling by high throughput sequencing.
Community assessment of methods to deconvolve cellular composition from bulk gene expression
GEO Series GSE199324. Homo sapiens. 118 samples. Type: Expression profiling by high throughput sequencing.
Comparison of methods for bulk automated simulation of glycosidic bond conformations - MD trajectory data
<p>MD trajectories (supplementary data for the article)</p>
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes [cell mixtures scRNA-seq]
GEO Series GSE220606. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes [AML Bulk]
GEO Series GSE220607. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Supplement to the "Response to the Referee" of the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme"
<p>This is the supplement to the "Response to the Referee" of the article "Simulation of marine stratocumulus using the super-droplet method: Numerical convergence and comparison to a double-moment bulk scheme".</p> <p><a href="https://zenodo.org/api/files/87a1c801-d2f8-4c0c-b408-db56481cf97d/Movie%201_w_theta_v_t.mp4">Movie 1_w_theta_v_t.mp4</a>: Time evolution of vertical profiles of buoyancy production and its decomposition.</p> <p><a href="https://zenodo.org/api/files/6eabdd4d-61fd-4f7a-8656-0c9d1fb7ce6f/Movie%202_scatter_w_theta_v_t.mp4">Movie 2_scatter_w_theta_v_t.mp4</a>: Time evolution of scatter plots of w vs theta_v.</p> <p><a href="https://zenodo.org/api/files/6eabdd4d-61fd-4f7a-8656-0c9d1fb7ce6f/Movie%203_boy_incloud_real_z_t.mp4">Movie 3_boy_incloud_real_z_t.mp4</a>: Time evolution of buoyancy production and cloud fraction, and time series of cloud cover.</p> <p> </p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.