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5 results for “cCRE”
A Study of Inhalation of 20,000 EU CCRE in Normal Volunteers Compared to Allergic Asthmatic Individuals
ClinicalTrials.gov study NCT00839124. IPD Sharing: Not stated. Countries: 1. Publications: 2.
HepG2 and K562 cCRE syntenic ages
<p>### DESCRIPTION ###</p> <p>HepG2 and K562 ENCODE 3 cCRE pELS, dELS, pELS + CTCF, dELS +CTCF.</p> <p>### METHOD ###</p> <p>To assign sequence ages enhancer cCRE .bed coordinates were intersected with hg38 100-way multiZ alignment syntenic blocks from UCSC genome browser.</p> <p> </p> <p>### Column names ###</p> <p>[#chr start_syn end_syn enh_id #chr_enh start_enh end_enh segment_number simple_0_complex_1 core_0_derived_1 mrca_age]</p> <p>### explanation of column names ###</p> <p>[#chr start_syn end_syn]: syntenic block .bed coordinates in hg38</p> <p>[ enh_id #chr_enh start_enh end_enh]: cCRE .bed coordinates in hg38</p> <p>[segment_number]: We count the number of syntenic block segments overlapping a single enhancer. </p> <p>[simple_0_complex_1]: Some syntenic blocks overlap multiple syntenic blocks, which we term "complex". Others overlap a single syntenic block, which we term "simple". Complex elements are annotated with 1 and simple elements are annotated with 0. </p> <p>[core_0_derived_1]: In complex enhancer sequences (i.e. enhancer sequences with multiple sequence ages). We refer to the oldest sequence in an enhancer is the "core" (annotated as 1) and the younger sequence age(s) as "derived" (annotated as 0). </p> <p>[mrca_age]: For each syntenic segment, we annotate the most recent common ancestor (MRCA) age. This corresponds to the estimated branch length between humans and the related MRCA. </p> <p>Taxon and summarized taxon ("Taxon2") for each MRCA age is annotated in the hg38_syn_taxon.bed file. </p>
Systemic Inflammatory Response to CCRE
ClinicalTrials.gov study NCT02847247. IPD Sharing: NO. Countries: 1. Publications: 0.
Effects of 20,000 EU of Clinical Center Reference Endotoxin (CCRE) Versus Placebo(ENDOHEART)
ClinicalTrials.gov study NCT03623022. IPD Sharing: NO. Countries: 1. Publications: 0.
A Study of Inhalation of 20,000 EU CCRE and Mucociliary Clearance (MCC) in Otherwise Healthy Individuals Who Are Current Cigarette Smokers
ClinicalTrials.gov study NCT00924768. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.