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61 results for “carry-over effects”
Early developmental carry-over effects on exploratory behaviour and DNA methylation in wild great tits (Parus major)
<p>Adverse, postnatal conditions experienced during development are known to induce lingering effects on morphology, behaviour, reproduction and survival. Despite the importance of early developmental stress for shaping the adult phenotype, it is largely unknown which molecular mechanisms allow for the induction and maintenance of such phenotypic effects once the early environmental conditions are released. Here we aimed to investigate whether lasting early developmental phenotypic changes are associated with post-developmental DNA methylation changes. We used a cross-foster and brood size experiment in great tit (Parus major) nestlings, which induced post-fledging effects on biometric measures and exploratory behaviour, a validated personality trait. We investigated whether these post-fledging effects are associated with DNA methylation levels of CpG sites in erythrocyte DNA. Individuals raised in enlarged broods caught up on their developmental delay after reaching independence and became more explorative as days since fledging passed, while the exploratory scores of individuals that were raised in reduced broods remained stable. Although we previously found that brood enlargement hardly affected pre-fledging methylation levels, we found 420 CpG sites that were differentially methylated between fledged individuals that were raised in small versus large sized broods. A considerable number of the affected CpG sites were located in or near genes involved in metabolism, growth, behaviour and cognition. Since the biological functions of these genes line up with the observed post-fledging phenotypic effects of brood size, our results suggest that DNA methylation provides organisms the opportunity to modulate their condition once the environmental conditions allow it. In conclusion, this study shows that nutritional stress during early development associates with indirect, carry-over effects on DNA methylation. We propose that treatment-associated DNA methylation differences arise as a consequence of pre-fledging phenotypic changes, rather than that they cause early environmentally-induced effects.</p>
Data from: Carry-over effect of leguminous winter cover crops and living mulches on winter wheat as a second main crop following white cabbage
<p><strong>Background: </strong>In trials on two strategies for the integration of legumes in a vegetable crop rotation (leguminous winter cover crops and living mulches), data were collected on the two subsequent crops white cabbage and winter wheat. The data on biomass and soil mineral nitrogen content are made publicly available here. </p> <p> </p> <p><strong>Abstract:</strong> <span>The direct effect of winter cover crops (WCC) or living mulches (LM) on a first vegetable crop has already been investigated. However, little is known about the effect on growth and yield of a second cash crop. </span><span>The aim of the study was to assess the carry-over effect of legumes grown as WCC or LM on winter wheat as a second crop after cabbage measured in yield and nitrogen release.</span><span> Two field trials were carried out in Germany between 2019 and 2022. In the WCC trial rye, rye with vetch, vetch, pea and faba bean were used as WCC and compared to bare soil. The WCC biomass was incorporated before cabbage planting in late spring. For the LM trial, perennial ryegrass or white clover were used as LM during cabbage cultivation and compared to bare soil. The LM biomass was incorporated together with the cabbage residues (STU/STT) and compared to an early incorporation of LM biomass before cabbage planting (RT). Winter wheat in both trials was seeded as the second main crop in the rotation in the fall.</span></p>
Protocalliphora larvae: moderate but lasting carry-over effects on yearling and mother coloration
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Early developmental carry-over effects on exploratory behaviour and DNA methylation in wild great tits (Parus major)
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Data from: Age-related variation in non-breeding foraging behaviour and carry-over effects on fitness in an extremely long-lived bird
1. Senescence has been widely documented in wild vertebrate populations, yet the proximate drivers of age-related declines in breeding success, including allocation trade-offs and links with foraging performance, are poorly understood. For long-lived, migratory species, the non-breeding period represents a critical time for investment in self-maintenance and restoration of body condition, which in many species is linked to fitness. However, the relationships between age, non-breeding foraging behaviour and fitness remain largely unexplored. 2. We performed a cross-sectional study, investigating age-related variation in the foraging activity, distribution and diet of an extremely long-lived seabird, the wandering albatross Diomedea exulans during the non-breeding period, and its links with subsequent reproductive performance. 3. We tracked the distributions of 82 adults aged 8 – 33 years with geolocator-immersion loggers and found an age-related decline in the number of landings (a proxy of foraging effort) during daylight hours. There was a decrease in body feather δ13C values in older males but not females, yet this did not accompany an age-related shift in distributions. Males conducted fewer landings than females, and the sexes were spatially segregated, with males foraging further south, likely due to their differential utilization of winds. 4. While younger (< 20 years) birds had higher foraging activity, all individuals went on to breed successfully the following season. In contrast, among older (20+ years) birds, individuals that landed more often were more likely to defer breeding or fail during incubation, suggesting they have lower foraging success. 5. As far as we are aware, this is the first demonstration of an age-specific carry-over effect of foraging behaviour in the non-breeding period on subsequent reproductive performance. This link between foraging behaviour and fitness in late but not early adulthood indicates that the ability of individuals to forage efficiently outside the breeding period may be an important driver of fitness differences in old age.
Data from: Larval diet and temperature alter mosquito immunity and development: using body size and developmental traits to track carry-over effects on longevity
<p><span><strong>Background</strong>:</span><span> Estimating arbovirus transmission potential requires a mechanistic understanding of how environmental factors influence the expression of adult mosquito traits. While preimaginal exposure to environmental factors can have profound effects on adult traits, tracking and predicting these effects remains challenging. </span></p> <p><span><strong>Methods</strong>:</span><span> Using <em>Aedes albopictus</em> and a structural equation modelling approach, we explored how larval nutrition and temperature jointly affect development rate and success, body size, and whether these metrics capture carry-over effects on adult longevity. Additionally, we investigated how larval diet and temperature affect the baseline expression of ten immune genes. </span></p> <p><span><strong>Results</strong>:</span><span> We found that larval development </span><span>success</span><span> was primarily determined by diet, while temperature and diet both affected development rate, pupal wet weight, and wing length. Effects of diet on both morphometric measures and their relationships to adult longevity were asymmetrical, with wing length having a positive association and pupal weight a negative association. Larval diet indirectly affected adult longevity, and the time to pupation was negatively correlated with longevity. </span><span>The</span><span> expression of </span><span>eight </span><span>immune genes from Toll, </span><span>JAK-STAT, and Imd pathways </span><span>was enhanced in mosquitoes with higher nutrition. </span></p> <p><span><strong>Conclusions</strong>:</span><span> Our results highlight deficiencies from using a single body size measure to capture carry-over effects on adult traits. Further studies of larval development rate under varying environmental conditions and its potential for tracking carry-over effects on vectorial capacity are warranted. </span></p>
Data from: Carry-over effects of seasonal migration on reproductive success through breeding site retention in a partially migratory bird
<p>Understanding the maintenance and dynamics of phenotypic polymorphisms requires unpicking key ecological mechanisms shaping the fitness costs and benefits of expressing alternative phenotypes, generating selection. Seasonal migration versus year-round residence expressed in partially migratory populations represents one common polymorphism that can experience strong selection through differential reproductive success. Yet, key hypothesised pathways that could generate such selection remain to be empirically tested.</p> <p>One hypothesis is that migratory tactics affect subsequent reproductive success through carry-over effects on breeding site retention and resulting breeding dispersal. By remaining in breeding areas all year round, residents could retain their preferred breeding site between years, and consequently have higher reproductive success. Conversely, migrants that escape harsh non-breeding season conditions could return in better condition, with high resource holding potential, and outcompete residents to retain their site. Such effects could further depend on migration timing and vary between years. Yet, such pathways have not been quantified, precluding empirical parameterisation of partial migration theory. </p> <p>We used four years of breeding and non-breeding season data from partially migratory European shags (<em>Gulosus aristotelis</em>) to test whether the three most frequent migratory tactics in this population (full resident, early migrant departing soon after breeding, and late migrant departing in late autumn) differed in their breeding site retention; whether site retention predicted reproductive success; and hence whether effects of migratory tactic on reproductive success were explicable through site retention.</p> <p>Overall, residents were much more likely to retain their breeding site between years than both early and late migrants, and site retention was associated with increased reproductive success. Yet, these effects varied somewhat among years: late migrants were always least likely to retain their site but had variable relative reproductive success. Path analyses revealed that effects of migratory tactic on reproductive success were only partly attributable to breeding site retention.</p> <p>These results indicate that multiple mechanisms underlie reproductive selection on migratory tactics, potentially contributing to maintaining behavioural polymorphisms. Yet, the clear associations between migratory tactics and local breeding dispersal reveal that these movements can be strongly interlinked across seasons, shaping overall spatio-seasonal dynamics in partially migratory systems.</p>
Data from: Carry-over effects of environmental stressors influence the life performance of brown trout
<p>Here, we focused on the carry-over effects of excessive sedimentation on the early life stages of brown trout in a multiphase experiment. First, we experimentally tested the influence of fine sediments (organic matter (OM) and inorganic sand, both <2.0 mm in diameter) on the metabolic rate (MO<sub>2</sub>), size, emergence, escape responses and survival of the relevant brown trout embryonic stage (egg, alevin or fry) in indoor experimental channels. Second, we mimicked the movements of parr to a more suitable habitat if available in natural rivers and transported parr to either their original or different treatments in outdoor experimental channels and remeasured their metabolic rate and size. </p>
Dataset for: Immediate and carry-over effects of late-spring frost and growing season drought on forest gross primary productivity capacity in the Northern Hemisphere
<p>Forests are increasingly exposed to extreme global warming-induced climatic events. However, the immediate and carry-over effects of extreme events on forests are still poorly understood. Gross primary productivity (GPP) capacity is regarded as a good proxy of the ecosystem's functional stability, reflecting its physiological response to its surroundings. Using eddy covariance data from 34 forest sites in the Northern Hemisphere, we analyzed the immediate and carry-over effects of late-spring frost (LSF) and growing season drought on needle-leaf and broadleaf forests. Path analysis was applied to reveal the plausible reasons behind the varied responses of forests to extreme events. The results show that LSF had clear immediate effects on the GPP capacity of both needle-leaf and broadleaf forests. However, GPP capacity in needle-leaf forests was more sensitive to drought than in broadleaf forests. There was no interaction between LSF and drought in either needle-leaf or broadleaf forests. Drought effects were still visible when LSF and drought coexisted in needle-leaf forests. Path analysis further showed that the response of GPP capacity to drought differed between needle-leaf and broadleaf forests, mainly due to the difference in the sensitivity of canopy conductance. Moreover, LSF had a more severe and long-lasting carry-over effect on forests than drought. These results enrich our understanding of the mechanisms of forest response to extreme events across forest types.</p>
Phase III Study to Assess the Long Term Efficacy, Carry-over Effect and Safety of 300 IR Sublingual Immunotherapy Tablets
ClinicalTrials.gov study NCT00418379. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Data from: Larval diet and temperature alter mosquito immunity and development: using body size and developmental traits to track carry-over effects on longevity
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Data from: The role of temperature in affecting carry-over effects and larval competition in the globally invasive mosquito, Aedes albopictus
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Arrival-breeding interval is flexible in a songbird and is not constrained by migration carry-over effects
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Dataset for: Immediate and carry-over effects of late-spring frost and growing season drought on forest gross primary productivity capacity in the Northern Hemisphere
Open the record for dataset details and reuse information.
Data from: Age-related variation in non-breeding foraging behaviour and carry-over effects on fitness in an extremely long-lived bird
Open the record for dataset details and reuse information.
Data from: Carry-over effects of seasonal migration on reproductive success through breeding site retention in a partially migratory bird
Open the record for dataset details and reuse information.
Data from: Immediate and carry-over effects of insect outbreaks on vegetation growth in West Greenland assessed from cells to satellite
Aim: Tundra ecosystems are highly vulnerable to climate change and climate-growth responses of Arctic shrubs are variable and altered by microsite environmental conditions and biotic factors. With warming and drought during the growing season, insect-driven defoliation is expected to increase in frequency and severity with potential broad-scale impacts on tundra ecosystem functioning. Here we provide the first broad-scale reconstruction of spatiotemporal dynamics of past insect outbreaks by assessing their effects on shrub growth along a typical Greenlandic fjord climate gradient from the inland ice to the sea. Location: Nuuk Fjord (64°30′N/51°23′W) and adjacent areas, West Greenland. Taxa: Great brocade (Eurois occulta L.) and grey willow (Salix glauca L.). Methods: We combined dendro-anatomical and remote sensing analyses. Time series of ring width and wood-anatomical traits were obtained from chronologies of > 40 years established from 153 individuals of S. glauca collected at nine sites. We detected anomalies in satellite-based Normalized Difference Vegetation Index (NDVI) related to defoliation and reconstructed past changes in photosynthetic activity across the region. Results: We identified outbreaks as distinctive years with reduced ring width, cell-wall thickness and vessel size, without being directly related to climate but matching with years of parallel reduction in NDVI. The two subsequent years after the defoliation showed a significant increase in ring width. The reconstructed spatiotemporal dynamics of these events indicate substantial regional variation in outbreak intensity linked to the climate variability across the fjord system. Main conclusions: Our results highlight the ability of S. glauca to cope with severe insect defoliation by changing carbon investment and xylem conductivity leading to high resilience and rapid recovery after the disturbance. Our multi-proxy approach allows us to pin-point biotic drivers of narrow ring formation and to provide new broad-scale insight on the C-budget and vegetation productivity of shrub communities in a widespread arctic ecosystem
Data from: Brain plasticity over the metamorphic boundary: carry-over effect of larval environment on froglet brain development
Brain development shows high plasticity in response to environmental heterogeneity. However, it is unknown how environmental variation during development may affect brain architecture across life history switch points in species with complex life cycles. Previously, we showed that predation and competition affect brain development in common frog (Rana temporaria) tadpoles. Here, we studied if larval environment had carry-over effects in brains of metamorphs. Tadpoles grown at high density had large optic tecta at metamorphosis, while tadpoles grown under predation risk had small diencephala. We found that larval density had a carry-over effect on froglet optic tectum size, while the effect of larval predation risk had vanished by metamorphosis. We discuss the possibility that the observed changes may be adaptive, reflecting the needs of an organism in given environmental and developmental contexts.
Data from: Temporal carry-over effects in sequential plant–soil feedbacks
Plant-soil feedbacks (PSF) strongly influence plant performance. However, to what extent these PSF effects are persistent in the soil and how they are altered by species that subsequently condition the soil is unclear. Here we test how conspecific and heterospecific soil-conditioning effects interact across different soil-conditioning phases. We conducted a fully factorial glasshouse experiment where six plant species conditioned soils in two consecutive phases and measured the performance of Jacobaea vulgaris. The species that conditioned the soil during the second conditioning phase strongly determined the performance of J. vulgaris, but also the order and combination of species that conditioned the soil in the two phases accounted for a large part of the variance. For shoot biomass this interaction was the dominant variance component. We show that soil conditioning legacies carry-over and interact with the conditioning effects of succeeding plants. In the field, species replacements at the patch level often appear to be unpredictable and we suggest that sequential feedbacks may explain these apparently unpredictable transitions.
Data from: Carry-over effects of conditions at the wintering grounds on breeding plumage signals in a migratory bird: roles of phenotypic plasticity and selection
To understand the consequences of ever-changing environment on the dynamics of phenotypic traits, distinguishing between selection processes and individual plasticity is crucial. We examined individual consistency/plasticity in several male secondary sexual traits expressed during the breeding season (white wing and forehead patch size, UV reflectance of white wing patch and dorsal melanin colouration) in a migratory pied flycatcher (Ficedula hypoleuca) population over an 11-year period. Furthermore, we studied carry-over effects of three environmental variables (NAO, a climatic index; NDVI, a vegetation index; and rainfall) at the wintering grounds (during pre-breeding moult) on the expression of these breeding plumage traits of pied flycatcher males at individual- and population-levels. While NAO correlates negatively with moisture in West Africa, NDVI correlates positively with primary production. Forehead patch size and melanin colouration were highly consistent within individuals among years, while the consistency of the other two traits was moderate. Wing patch size decreased with higher NAO and increased with higher rainfall and NDVI at the individual-level. Interestingly, small-patched males suffered lower survival during high NAO winters than large-patched males, and vice versa during low NAO winters. These counteracting processes meant that the individual-level change was masked at the population-level where no relationship was found. Our results provide a good example of how variation in the phenotypic composition of a natural population can be a result of both environment-dependent individual plasticity and short-term microevolution. Moreover, when plasticity and viability selection operate simultaneously, their impacts on population composition may not be evident.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.