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1,237 results for “cell characterization”

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zenodo48/100

Characterization of a loss-offunction NSF attachment protein beta mutation in monozygotic triplets affected with epilepsy and autism using cortical neurons from proband-derived and CRISPR-corrected induced pluripotent stem cell lines

<p>RNA-seq data of matured cortical neurons (8-weeks old) derived from the induced pluripoent stem cells (iPSC) of control parents (CtrlF and CtrlM) and corrected proband. There are three replicates (Rep1, Rep2, Rep3) for each sample&nbsp; with Forwad read (R1_001.fastq.gz)</p> <p>CtrlF:&nbsp; Control Father sample</p> <p>CtrlM: Control mother sample</p> <p>NDD_01_Corr_Het: Heterozygous correction of NAPB mutation (c.354+2T&gt;G) in NDD_01 proband</p> <p>NDD_05_Corr_Hom: Homozygous correction of NAPB mutation (c.354+2T&gt;G) in NDD_05 proband</p>

opencc-by-4.0Dec 2023View details →
zenodo48/100

Identification and characterization of the cell division protein MapZ of Streptococcus suis

<p>Supplementary data and code related to the manuscript &quot;Identification and characterization of the cell division protein MapZ of <em>Streptococcus suis</em>&quot;.</p>

opencc-by-4.0Aug 2021View details →
zenodo44/100

Raw read counts and phased SNP counts for every single cell in the sequencing datasets of the breast cancer patient S1 from "Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL"

<p>This dataset contains the raw read counts and phased SNP counts&nbsp;for every single cell in the sequencing datasets of breast cancer patient S1 from &ldquo;Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL&rdquo; [Zaccaria &amp; Raphael, 2020]. These data enable the full reproduction of all the results in the related manuscript for breast cancer patient S1. Specifically, the data are provided in two files for every dataset <em>DAT</em> of patient S1 with the following format:</p> <ol> <li><em>DAT.raw</em>_<em>read</em>_<em>counts.bed.gz&nbsp;</em>is a multi-cell BED file containing the raw read counts in the following fields: <ul> <li>CHROMOSOME: the name of a human chromosome</li> <li>START: the starting genomic position of a genomic bin in the chromosome</li> <li>END: the ending genomic position of the genomic bin in the chromosome</li> <li>CELL: the cell barcode that uniquely identifies a cell</li> <li>NORMAL: the raw read count&nbsp;for the specified bin from a matched-normal sample</li> <li>COUNT: the raw read count&nbsp;for the specified bin in the specified cell</li> <li>RDR: the estimated read-depth ratio for the specified bin in the specified cell</li> </ul> </li> <li><em>DAT.phased</em>_<em>snps</em>_<em>counts.pos.gz&nbsp;</em>is a multi-cell POS file containing the phased SNP counts in the following fields: <ul> <li>CHROMOSOME: the name of a human chromosome</li> <li>POS: the genomic position in the chromosome of a germline SNP</li> <li>CELL: the cell barcode that uniquely identifies a cell</li> <li>COUNT_HAPLOTYPE_A: the count of reads that cover&nbsp;the SNP and that belong to haplotype A in the specified cell</li> <li>COUNT_HAPLOTYPE_B: the count of reads that cover&nbsp;the SNP and that belong to haplotype B in the specified cell</li> </ul> </li> </ol> <p>All the files have been compressed using standard <em>gzip</em>.</p>

opencc-by-4.0May 2020View details →
zenodo44/100

Raw read counts and phased SNP counts for every single cell in the sequencing datasets of the breast cancer patient S0 from "Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL"

<p>This dataset contains the raw read counts and phased SNP counts&nbsp;for every single cell in the sequencing datasets of breast cancer patient S0 from &ldquo;Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL&rdquo; [Zaccaria &amp; Raphael, 2020]. These data enable the full reproduction of all the results in the related manuscript for breast cancer patient S0. Specifically, the data are provided in two files for every dataset <em>DAT</em> of patient S0 with the following format:</p> <ol> <li><em>DAT.raw</em>_<em>read</em>_<em>counts.bed.gz&nbsp;</em>is a multi-cell BED file containing the raw read counts in the following fields: <ul> <li>CHROMOSOME: the name of a human chromosome</li> <li>START: the starting genomic position of a genomic bin in the chromosome</li> <li>END: the ending genomic position of the genomic bin in the chromosome</li> <li>CELL: the cell barcode that uniquely identifies a cell</li> <li>NORMAL: the raw read count&nbsp;for the specified bin from a matched-normal sample</li> <li>COUNT: the raw read count&nbsp;for the specified bin in the specified cell</li> <li>RDR: the estimated read-depth ratio for the specified bin in the specified cell</li> </ul> </li> <li><em>DAT.phased</em>_<em>snps</em>_<em>counts.pos.gz&nbsp;</em>is a multi-cell POS file containing the phased SNP counts in the following fields: <ul> <li>CHROMOSOME: the name of a human chromosome</li> <li>POS: the genomic position in the chromosome of a germline SNP</li> <li>CELL: the cell barcode that uniquely identifies a cell</li> <li>COUNT_HAPLOTYPE_A: the count of reads that cover&nbsp;the SNP and that belong to haplotype A in the specified cell</li> <li>COUNT_HAPLOTYPE_B: the count of reads that cover&nbsp;the SNP and that belong to haplotype B in the specified cell</li> </ul> </li> </ol> <p>All the files have been compressed using standard <em>gzip</em>.</p>

opencc-by-4.0May 2020View details →
zenodo44/100

Data for a publication "Characterization of hFOB 1.19 cell line for studying Zn-based degradable metallic biomaterials"

<div> <p>These data are published as part of the paper: &ldquo;Characterization of hFOB 1.19 cell line for studying Zn-based degradable metallic biomaterials&rdquo; published in journal: &ldquo;Materials&rdquo;.&nbsp;</p> </div> <div> <p>This repository contains one folder, namely: &ldquo;concentration ICP_MS&rdquo;&nbsp;</p> </div> <div> <p>This folder contains further data relevant to the results published in the paper, which are described in a separate file inside.&nbsp;</p> <p>&nbsp;</p> <p><strong>Preprint evolution (versions).</strong></p> <p><strong>2024-01-31-V2</strong>; <a href="https://doi.org/10.20944/preprints202401.2053.v2" target="_blank" rel="noopener">(https://doi.org/10.20944/preprints202401.2053.v2</a>) - the acknowledgement was modified as well as the data availability mentioning the Zenodo repository with the dataset as well as the availability of the datasets generated during and/or analyzed during the current study on reasonable request from corresponding author.</p> </div> <div> <p>&nbsp;</p> </div>

opencc-by-4.0Jan 2024View details →
zenodo44/100

Datasets: Performance Characterization of Lithium-Ion Battery Cells Within Restricted Operating Range Using an Extended Ragone Plot

<h1>Documentation</h1> <p>This repository contains the measurement data presented in <strong>"Performance Characterization of Lithium-Ion Battery Cells Within Restricted Operating Range Using an Extended Ragone Plot."</strong></p> <p>The performance characterization was conducted on three lithium-ion battery cell types, each with two samples. In the publication only datasets from the following cells are included: #1: SCiB-23Ah-01, #2: SLPB8644143-353, #3: M1B-1223-01. The measurements were performed using a Scienlab SL60/300/18BT2C battery test system in combination with a BINDER type MK 720 temperature chamber. Further details about the battery cells, the experimental setup and procedures are available in the publication. An uncertainty analysis for these measurements is included in the supplementary material of the publication.</p> <blockquote> <p><strong>Note:</strong> Please cite the referenced publication when using these datasets in your work.</p> </blockquote> <h2>Datasets Overview</h2> <p><strong>Toshiba SCiB&trade; 23 Ah (prismatic)<br></strong></p> <ul> <li>SCiB-23Ah-01<br> <ul> <li>OCVTest#1</li> <li>PowerTemperatureTest_dis-Umax#1<br> <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 1 (2.7 V); 2 (2.55 V); 3 (2.4 V); 4 (2.25 V); 5 (2.1 V).</em></li> </ul> </li> </ul> </li> <li>SCiB-23Ah-02 <ul> <li>OCVTest#1</li> <li>PowerTemperatureTest_dis-Umax#1 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 1 (2.7 V); 2 (2.55 V); 3 (2.4 V); 4 (2.25 V); 5 (2.1 V).</em></li> </ul> </li> </ul> </li> </ul> <p><strong>Shenzen Melasta Battery SLPB8644143 (pouch)<br></strong></p> <ul> <li>SLPB8644143-353<br> <ul> <li>OCVTest#1</li> <li>PowerTemperatureTest_dis-Umax#1 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 1 (4.2 V).</em></li> </ul> </li> <li>PowerTemperatureTest_dis-Umax#2 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 2 (4.1 V); 3 (4.0 V); 4 (3.9 V); 5 (3.8 V).</em></li> </ul> </li> </ul> </li> <li>SLPB8644143-45 <ul> <li>OCVTest#1</li> <li>PowerTemperatureTest_dis-Umax#1 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 1 (4.2 V).</em></li> </ul> </li> <li>PowerTemperatureTest_dis-Umax#2 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 2 (4.1 V); 3 (4.0 V); 4 (3.9 V); 5 (3.8 V).</em></li> </ul> </li> </ul> </li> </ul> <p><strong>LithiumWerks (A123) ANR26650m1B (cylindrical)<br></strong></p> <ul> <li>M1B-1223-01<br> <ul> <li>OCVTest#1</li> <li>PowerTemperatureTest_dis-Umax#1 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 1 (3.6 V); 2 (3.45 V); 5 (3.3 V).</em></li> </ul> </li> <li>PowerTemperatureTest_dis-Umax#2<br> <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 3 (3.4 V); 4 (3.35 V).</em></li> </ul> </li> </ul> </li> <li>&nbsp;M1B-1223-02 <ul> <li>PowerTemperatureTest_dis-Umax#2 <ul> <li><em>This dataset contains the end-of-charge voltage variation levels i_U = 3 (3.4 V); 4 (3.35 V).</em></li> </ul> </li> </ul> </li> </ul> <h2>Usage instructions</h2> <ol> <li>Raw test reports are stored in the&nbsp;<code>test reports</code> directory as <code>*.csv</code> and <code>*.info.txt</code> files. These files contain the following measurement signals: <ul> <li>Time, Test step, ind_T, ind_U, ind_xP, E [J], Eneg [J], Epos [J],&nbsp;I [A],&nbsp;P [W],&nbsp;Q [As], Qneg [As], Qpos [As],&nbsp;T_1 [&deg;C], T_2 [&deg;C], T_3 [&deg;C],&nbsp;T_Clima [&deg;C],&nbsp;U [V]</li> </ul> </li> <li>The test reports are structured and consolidated into an HDF5 file (<code>Scienlab.h5</code>) for efficient storage and analysis.&nbsp;This HDF5 file can be processed using the <strong>HDF5 Data Analysis and Visualization Toolkit</strong>, provided in this repository. <ul> <li>The Python script <code>hdf5_main.py</code> is included for processing and visualizing the datasets.</li> <li>PowerTemperatureTest_dis-Umax datasets contain cyclization data from multiple constant power (CP) discharges and standardized constant current constant voltage (CCCV) charges, with varying end-of-charge voltages.</li> <li>OCVTest datasets contain low-current galvanostatic data required for performance characterization via reconstruction-based approaches. The test protocol is extensively described in the publication.</li> </ul> </li> </ol>

opencc-by-4.0Nov 2024View details →
zenodo44/100

Minimal data set for: Air-liquid interface exposure of A549 human lung cells to characterize the hazard potential of a gaseous bio-hybrid fuel blend

<p>This minimal data set presents the values behind the means and standard deviation for the publication entitled: "Air-liquid interface exposure of A549 human lung cells to characterize the hazard potential of a gaseous bio-hybrid fuel blend"</p>

opencc-by-4.0Jun 2024View details →
zenodo44/100

Characterizing cell-type spatial relationships across length scales in spatially resolved omics data: data repository

<h1>CRAWDAD</h1> <p>Spatially resolved omics (SRO) technologies enable the identification of cell types while preserving their organization within tissues. Application of such technologies offers the opportunity to delineate cell-type spatial relationships, particularly across different length scales, and enhance our understanding of tissue organization and function. To quantify such multi-scale cell-type spatial relationships, we develop CRAWDAD, Cell-type Relationship Analysis Workflow Done Across Distances, as an open-source R package with source code and additional documentation at https://jef.works/CRAWDAD/.</p> <p>During CRAWDAD's development, we generated simulated datasets and new cell-type annotations for human spleen data, provided here. The external datasets such as the mouse cerebellum, mouse embryo, mouse brain, and human breast cancer data used in the paper can be found in their original publication. See more information in CRAWDAD's data availability statement.</p> <h2>Simulated Datasets</h2> <ul> <li>sim.csv: the simulated data. Used in Figure 1 b-g, Supplementary Figure 1 a-c, and Supplementary Figure 9 a-b.</li> <li>ext_sim.csv: the extended simulated data. Used in Supplementary Figure 1 d-f.</li> <li>null_sim_visualization.csv: the null simulated data. Used to generate the plots Supplementary Figure 2 a-d.</li> <li>null_sim_1.csv - null_sim_10.csv: the 10 null simulated datasets. Used to quantitatively compare CRAWDAD, Squidpy&rsquo;s co-occurrence implementation, and Ripley&rsquo;s K Cross.</li> </ul> <h2>HuBMAP Datasets</h2> <ul> <li>pkhl.csv: annotated cell types and positions of sample HBM389.PKHL.936 from donor HBM966.VNKN.965. Used in Figure 5 a-h, Supplementary Figure 5 a, Supplementary Figure 7 a-c, and Supplementary Figure 8 c. doi:10.35079/HBM389.PKHL.936</li> <li>xxcd.csv: annotated cell types and positions of sample HBM772.XXCD.697 from donor HBM966.VNKN.965. Used in Figure 5 d-h, Supplementary Figure 5 a-c, and Supplementary Figure 7 a-c. doi:10.35079/HBM772.XXCD.697</li> <li>fsld.csv: annotated cell types and positions of sample HBM342.FSLD.938 from donor HBM245.ZWNT.288. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM342.FSLD.938</li> <li>pbvn.csv: annotated cell types and positions of sample HBM825.PBVN.284 from donor HBM245.ZWNT.288. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM825.PBVN.284</li> <li>ksfb.csv: annotated cell types and positions of sample HBM556.KSFB.592 from donor HBM298.KGNJ.374. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM556.KSFB.592</li> <li>ngpl.csv: annotated cell types and positions of sample HBM568.NGPL.345 from donor HBM298.KGNJ.374. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM568.NGPL.345</li> </ul> <h2>External Datasets</h2> <ul> <li>Mouse cerebellum: Used in Figure 2 a-e, Supplementary Figure 3 a-b, Supplementary Figure 4 a-d, and Supplementary Figure 8 a.</li> <li>Mouse embryo: Used in Figure 2 f-j, Supplementary Figure 3 c-d, Supplementary Figure 4 e-h, and Supplementary Figure 8 b.</li> <li>Human breast cancer: Used in Figure 3 a-c.</li> <li>Mouse brains: Used in Figure 4 a-e.</li> </ul>

opengpl-3.0-or-laterOct 2024View details →
zenodo40/100

Harnessing single cell RNA sequencing to identify dendritic cell types, characterize their biological states and infer their activation trajectory

<p><strong>Summary: </strong>Dendritic cells (DCs) orchestrate innate and adaptive immunity, by translating the sensing of distinct danger signals into the induction of different effector lymphocyte responses, to induce different defense mechanisms suited to face distinct types of threats. Hence, DCs are very plastic, which results from two key characteristics. First, DCs encompass distinct cell types specialized in different functions. Second, each DC type can undergo different activation states, fine-tuning its functions depending on its tissue microenvironment and the pathophysiological context, by adapting the output signals it delivers to the input signals it receives. Hence, to better understand DC biology and harness it in the clinic, we must determine which combinations of DC types and activation states mediate which functions, and how.<br> To decipher the nature, functions and regulation of DC types and their physiological activation states, one of the methods that can be harnessed most successfully is ex vivo single cell RNA sequencing (scRNAseq). However, for new users of this approach, determining which analytics strategy and computational tools to choose can be quite challenging, considering the rapid evolution and broad burgeoning of the field. In addition, awareness must be raised on the need for specific, robust and tractable strategies to annotate cells for cell type identity and activation states. It is also important to emphasize the necessity of examining whether similar cell activation trajectories are inferred by using different, complementary methods. In this chapter, we take these issues into account for providing a pipeline for scRNAseq analysis and illustrating it with a tutorial reanalyzing a public dataset of mononuclear phagocytes isolated from the lungs of na&iuml;ve or tumor-bearing mice. We describe this pipeline step-by-step, including data quality controls, dimensionality reduction, cell clustering, cell cluster annotation, inference of the cell activation trajectories and investigation of the underpinning molecular regulation. It is accompanied with a more complete tutorial on Github. We anticipate that this method will be helpful for both wet lab and bioinformatics researchers interested in harnessing scRNAseq data for deciphering the biology of DCs or other cell types, and that it will contribute to establishing high standards in the field.</p> <p>&nbsp;</p> <p><strong>Data:</strong></p> <p>1. negative_cDC1_relative_signatures.csv : Negative signatures for performing Connectivity Map (cMAP) Analysis</p> <p>2. positive_cDC1_relative_signatures.csv : Positive signatures for performing Connectivity Map (cMAP) Analysis</p>

opencc-by-4.0Dec 2021View details →
zenodo40/100

# Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer's disease

<p>Dysregulation of gene expression in Alzheimer&rsquo;s disease (AD) remains elusive, especially at the cell type level. Gene regulatory network, a key molecular mechanism linking transcription factors (TFs) and regulatory elements to govern target gene expression, can change across cell types in the human brain and thus serve as a model for studying gene dysregulation in AD. However, it is still challenging to understand how cell type networks work abnormally under AD. To address this, we integrated single-cell multi-omics data and predicted the gene regulatory networks in AD and control for four major cell types, excitatory and inhibitory neurons, microglia and oligodendrocytes. Importantly, we applied network biology approaches to analyze the changes of network characteristics across these cell types, and between AD and control. For instance, many hub TFs target different genes between AD and control (rewiring). Also, these networks show strong hierarchical structures in which top TFs (master regulators) are largely common across cell types, whereas different TFs operate at the middle levels in some cell types (e.g., microglia). The regulatory logics of enriched network motifs (e.g., feed-forward loops) further uncover cell type-specific TF-TF cooperativities in gene regulation. The cell type networks are highly modular and several network modules with cell-type-specific expression changes in AD pathology are enriched with AD-risk genes and putative targets of approved and pending AD drugs, suggesting possible cell-type genomic medicine in AD. Finally, using the cell type gene regulatory networks, we developed machine learning models to classify and prioritize additional AD genes. We found that top prioritized genes predict clinical phenotypes (e.g., cognitive impairment) with reasonable accuracy. Overall, this single-cell network biology analysis provides a comprehensive map linking genes, regulatory networks, cell types and drug targets and reveals dysregulated cell type gene dysregulatory mechanisms in AD.</p>

opencc-by-4.0Jan 2022View details →
zenodo40/100

Long read proteogenomics to characterize protein isoform diversity in human umbilical vein endothelial cells (HUVECs)

<p>Endothelial cells (ECs) comprise the lumenal lining of all blood vessels and are critical for the functioning of the cardiovascular system and their phenotypes can be modulated by protein isoforms. To characterize the isoform landscape within EC, we applied a long read proteogenomics approach to analyze human umbilical vein endothelial cells (HUVECs). Transcripts delineated from PacBio sequencing serve as the basis for a sample-specific protein database used for downstream MS analysis to infer protein isoform expression. We detected 53,836 transcript isoforms from 10,426 genes, with 22,195 of those transcripts being novel. Furthermore, the predominant isoform in HUVECs does not correspond with the accepted &ldquo;reference isoform&rdquo; 25% of the time, with vascular pathway-related genes among this group. We found 2,597 protein isoforms supported through unique peptides, with an additional 2,280 isoforms nominated upon incorporation of long-read transcript evidence. We characterized a novel alternative acceptor for endothelial-related gene <em>CDH5</em>, suggesting potential changes in its associated signaling pathways. Finally, we identified novel protein isoforms arising from a diversity of splicing mechanisms supported by uniquely mapped novel peptides. Our results represent a high resolution atlas of known and novel isoforms of potential relevance to endothelial phenotypes and function.</p>

opencc-by-4.0Jun 2022View details →
zenodo40/100

FOLFOXIRI resistance induction and characterization in human colorectal cancer cells

<p>Supplementary dataset to &quot;FOLFOXIRI resistance induction and characterization in human colorectal cancer cells&quot;</p>

opencc-by-4.0Sep 2022View details →
zenodo40/100

Dataset for "Applicability of Control Materials To Support Gene Promoter Characterization and Expression in Engineered Cells Using Digital PCR"

<p>This dataset constitutes the pre-processed&nbsp;data contained&nbsp;in the publication &#39;Applicability of Control Materials To Support Gene Promoter Characterization and Expression in Engineered Cells Using Digital PCR&#39; Analytical Chemistry (2022)&nbsp;94(14):5566-5574&nbsp;(DOI:&nbsp;10.1021/acs.analchem.1c05134).</p>

opencc-by-4.0Oct 2022View details →
zenodo40/100

Three dimensional characterization of nickel coarsening in solid oxide cells via ex-situ ptychographic nano-tomography

<p>Three-dimensional&nbsp;dataset of a solid oxide cell (SOC) fuel electrode microstructure. Data were&nbsp;acquired using ptychographic X-ray computed tomography (PXCT).&nbsp;</p>

opencc-by-4.0Feb 2018View details →
zenodo40/100

Fig. 2 in Sarcocystis falcatula-like derived from opossum in Northeastern Brazil: In vitro propagation in avian cells, molecular characterization and bioassay in birds

Fig. 2. (A) A mature schyzont of Sarcocystis falcatula-like (Sarco-BA1 strain) in a permanent chicken cell line (UMNSAH/DF-1). May-Grüenwald-Giemsa stain. Bar = 20 μm. (B) Extracellular merozoites of Sarco-BA1 on a monolayer of UMNSAH/DF-1 cells. Bar = 10 μm.

opencc-by-4.0Dec 2019View details →
zenodo40/100

Fig. 1 in Sarcocystis falcatula-like derived from opossum in Northeastern Brazil: In vitro propagation in avian cells, molecular characterization and bioassay in birds

Fig. 1. Sporocyst of Sarcocystis falcatula-like. Four sporozoites are visualized inside the sporocyst by light microscopy (A). Autofluorescence of the sporocyst wall is observed after excitation with ultraviolet on a fluorescence microscope (B).

opencc-by-4.0Dec 2019View details →
zenodo40/100

Data used in analyses of Danaher et al. 2024 "Childhood-onset lupus nephritis is characterized by complex interactions between kidney stroma and infiltrating immune cells"

<p>CosMx 1000-plex data and R code from childhood-onset lupus nephris samples, generated for the article Danaher et al. 2024 "Childhood-onset lupus nephritis is characterized by complex interactions between kidney stroma and infiltrating immune cells".</p>

opencc-by-4.0Oct 2024View details →
zenodo40/100

A Data-Driven Epigenetic Characterization of Morning Fatigue Severity in Oncology Patients Receiving Chemotherapy: Associations with Epigenetic Age Acceleration, Blood Cell Types, and Expression-Associated Methylation

<p>This dataset contains supplementary materials including the eCpG mapping analysis results and annotation. The manuscript has been accepted for publication at Cancer Medicine. Please cite both the paper as well as the DOI of this dataset if you make use of the data.</p>

opencc-by-4.0Oct 2024View details →
zenodo40/100

NewSOC, supplementary information to WT2.3 "Development of doped lanthanum chromite based fuel electrodes", WT2.5 "Electrochemical characterization of single cells"

<p>These are experimental data related to CERTH participation in NewSOC project (874577) regarding WT2.3 &ldquo;Development of doped lanthanum chromite based fuel electrodes&rdquo;, WT2.5 &ldquo;Electrochemical characterization of single cells&rdquo;. The data set includes:</p> <ul> <li>physicochemical characterization (ICP, BET, XRD and SEM) of the powders and electrodes or cells produced (SEM)</li> <li>electrochemical characterization (iV characteristics, impedance, stability tests)</li> </ul> <p>&nbsp;</p> <p><strong>LSCrF0.1.rar</strong>: The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.9</sub>Fe<sub>0.1</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, (B) SEM images&nbsp;of electrodes and cells and (C) data set including iV, EIS and stability testing for button cells using different electrolyte substrates (formulation and thickness)&nbsp;and oxygen electrode materials operating under steam electrolysis, co-electrolysis of steam and carbon dioxide and reversible operation in steam or carbon dioxide cycle.</p> <p><strong>LSCrF0.5.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.5</sub>Fe<sub>0.5</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, (B) SEM images&nbsp;of electrodes and cells and (C) data set including iV and EIS&nbsp;for button cells operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.&nbsp;&nbsp;</p> <p><strong>LSCrNi0.1.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.9</sub>Ni<sub>0.1</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, (B) SEM images&nbsp;of electrodes and cells and (C) data set including iV and EIS&nbsp;for button cells operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.&nbsp;</p> <p><strong>LSCrNi0.5.rar:</strong>&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.5</sub>Ni<sub>0.5</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, and (B) data set including iV and EIS&nbsp;for button cells operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.</p> <p><strong>LSCrMn0.1.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.9</sub>Mn<sub>0.1</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, (B) SEM images&nbsp;of electrodes and cells and (C) data set including iV and EIS&nbsp;for button cells operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.&nbsp;&nbsp;&nbsp;</p> <p><strong>LSCrF0.05Ti0.05.rar</strong>: The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.9</sub>Fe<sub>0.05</sub>Ti<sub>0.05</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM and (B) data set including iV and EIS for button cells operating under steam electrolysis, co-electrolysis of steam and carbon dioxide.</p> <p><strong>LSCrF0.05V0.05.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.9</sub>Fe<sub>0.05</sub>V<sub>0.05</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM and (B) data set including iV and EIS for button cells operating under steam electrolysis, co-electrolysis of steam and carbon dioxide.</p> <p><strong>LSCrF0.25Ti0.25.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.5</sub>Fe<sub>0.25</sub>Ti<sub>0.25</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM and (B) data set including iV and EIS for button cells operating under steam electrolysis, co-electrolysis of steam and carbon dioxide.&nbsp;</p> <p><strong>LSCrF0.25V0.25.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to La<sub>0.75</sub>Sr<sub>0.25</sub>Cr<sub>0.5</sub>Fe<sub>0.25</sub>V<sub>0.25</sub>O<sub>3-&delta;</sub> material.&nbsp;(A) powder physicochemical characterization including ICP, BET, XRD and SEM, (B) SEM images&nbsp;of electrodes and cells and (C) data set including iV and EIS&nbsp;for button cells operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.</p> <p><strong>Ni-GDC.rar</strong>:&nbsp;The zip&nbsp;folder contains data related to button cell stability testing using a commercial Ni-GDC fuel electrode&nbsp;material operating under steam electrolysis. &nbsp;&nbsp;</p> <p><strong>LARGE CELLS.rar</strong>: Data set for large cells (5x5 cm2) including iV, EIS and short-term stability testing employing Keracell III cell, Ni-GDC and LSCrF0.1&nbsp;fuel electrodes operating under steam electrolysis and co-electrolysis of steam and carbon dioxide.</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2023View details →
dryad40/100

An in vivo microscopy dataset of immune cells for the characterization of apoptotic cell death

Open the record for dataset details and reuse information.

publicMar 2024View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

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behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

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electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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