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524 results for “cell site”
Fig.ç5.Ec hinoderes ohtsukai sp. nov., holotype, male (ZIHU 3976), Nomarski photomicrographs. A, Segments 1 and 2, dorsal view; B, segment 4, dorsal view. Abbreviations: dss, droplet-shaped sensory spot; gco1, glandular cell outlet type I; gco2, modi ed glandular cell outlet type II; mds, middorsal spine; pac, pachycyclus; pf, pectinate fringe; ps, perforation site; rss, rounded sensory spot. in A New Brackish-water Species of Echinoderes (Kinorhyncha: Cyclorhagida) from the Seto Inland Sea, Japan
Fig.ç5.Ec hinoderes ohtsukai sp. nov., holotype, male (ZIHU 3976), Nomarski photomicrographs. A, Segments 1 and 2, dorsal view; B, segment 4, dorsal view. Abbreviations: dss, droplet-shaped sensory spot; gco1, glandular cell outlet type I; gco2, modi ed glandular cell outlet type II; mds, middorsal spine; pac, pachycyclus; pf, pectinate fringe; ps, perforation site; rss, rounded sensory spot.
Transcription start site analysis for heterogenous CD4+ T cells using 5′ scRNA-seq
<p>These datasets are generated by ReapTEC (read-level pre-filtering and transcribed enhancer call) using 5' single-cell RNA-seq data on human heterogenous CD4+ T cells. By taking advantage of a unique "cap signature" derived from the 5′-end of a transcript, ReapTEC simultaneously profiles gene expression and enhancer activity at nucleotide resolution using 5′-end single-cell RNA-sequencing (5′ scRNA-seq). The detail of ReapTEC pipeline is described in https://github.com/MurakawaLab/ReapTEC.</p>
Text-fig. 15. Photomicrographs of thin sections of holotype BP/16/1738, Sorindeioxylon gorongosense gen. et sp. nov. from Muaredzi site 5, Gorongosa, Mozambique. a: TS, note the irregularly spaced and very narrow bands of parenchyma and mostly solitary vessel elements; b: TS at higher magnification with narrow rays; c: radial longitudinal section (RLS), rather oblique but shows the alternate, small-to-medium inter-vessel pits; d: tangential longitudinal section (TLS), rays are 1–3 cells wide but maintain the same width. Small arrow towards the right hand ray indicates a prismatic crystal in the ray cell; e: TLS rays with fibres in between; f: RLS showing mixed ray cells (upright, square and procumbent) poorly preserved. in Stratigraphy, Chronology And Palaeontology Of The Tertiary Rocks Of The Cheringoma Plateau, Mozambique
Text-fig. 15. Photomicrographs of thin sections of holotype BP/16/1738, Sorindeioxylon gorongosense gen. et sp. nov. from Muaredzi site 5, Gorongosa, Mozambique. a: TS, note the irregularly spaced and very narrow bands of parenchyma and mostly solitary vessel elements; b: TS at higher magnification with narrow rays; c: radial longitudinal section (RLS), rather oblique but shows the alternate, small-to-medium inter-vessel pits; d: tangential longitudinal section (TLS), rays are 1–3 cells wide but maintain the same width. Small arrow towards the right hand ray indicates a prismatic crystal in the ray cell; e: TLS rays with fibres in between; f: RLS showing mixed ray cells (upright, square and procumbent) poorly preserved.
Supplementary Data: Identification of experimentally-supported poly(A) sites in single-cell RNA-seq data with SCINPAS
<p>Supplementary data for the SCINPAS analysis as part of the manuscript "Identification of experimentally-supported poly(A) sites in single-cell RNA-seq data with SCINPAS".</p> <p>It includes the output of SCINPAS, available here: <a href="https://github.com/zavolanlab/SCINPAS">https://github.com/zavolanlab/SCINPAS</a>, used for the analyses. Additionally, the scripts and data for the comparison with other tools is provided. Please read the README.md for more information.</p>
Transcription start site analysis for heterogenous CD4+ T cells using 5′ scRNA-seq
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Data from: Single-cell peripheral immunoprofiling of Lewy body and Parkinson’s disease in a multi-site cohort
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Dataset for the paper "High Loading of Single Atomic Iron Sites in Pyrolysed Fe-NC Oxygen Reduction Catalysts for Proton Exchange Membrane Fuel Cells", DOI:10.1038/s41929-022-00772-9
<p>The data in this spreadsheet was used to produce the figures in the paper </p> <p>Authors: Asad Mehmood, Mengjun Gong, Frédéric Jaouen, Aaron Roy, Andrea Zitolo, Anastassiya Khan, Moulay-Tahar Sougrati, Mathias Primbs, Alex Martinez Bonastre, Dash Fongalland, Goran Drazic, Peter Strasser, Anthony Kucernak</p> <p>Title: High Loading of Single Atomic Iron Sites in Pyrolysed Fe-NC Oxygen Reduction Catalysts for Proton Exchange Membrane Fuel Cells</p> <p>Journal: Nature Materials</p> <p>DOI: 10.1038/s41929-022-00772-9</p> <p>Please cite the above reference if you wish to use this data </p> <p> </p> <p>DOI of data: 10.5281/zenodo.6411262</p>
Single-particle tracking data for "CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning"
<p>This dataset contains all the raw SPT data reported in "­­­­CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning" in the form of SPT trajectories. The SPT trajectories are provided in two different formats for convenience: a CSV format and a Matlab format. Both formats are readable by Spot-On: https://spoton.berkeley.edu/</p> <p>The SPT data contains "fast tracking" spaSPT data and this data was analyzed using the Matlab version of Spot-On which can be found and downloaded at: https://gitlab.com/tjian-darzacq-lab/spot-on-matlab</p> <p> </p> <p>Full details about the Matlab and CSV formats are provided in the ReadMe files in the associated zip files.</p> <p>Please see the associated manuscript for a detailed description of how the data was acquired and analyzed.</p>
Enhanced Mapping of Small Molecule Binding Sites in Cells
<p>Selected docking poses for Wozniak et al manuscript. File name include the structure id (PDBID or Alphafold model) and the probe id, separated by an underscore (i.e., 6tjk_4.pdb, or AF-P10620-F1-model_6.pdb).</p>
A Multi-site Study of Autologous Cord Blood Cells for Hypoxic Ischemic Encephalopathy
ClinicalTrials.gov study NCT02612155. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Deoxynivalenol globally affects the selection of 3’ splice sites in human cells by suppressing the splicing factors, U2AF1 and SF1
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PD-1 Inhibitor and Chemotherapy With Concurrent Irradiation at Varied Tumour Sites in Advanced Non-small Cell Lung Cancer
ClinicalTrials.gov study NCT03774732. IPD Sharing: Not stated. Countries: 2. Publications: 1.
Assessment of the Effect of Tumor Thickness and Site on Level IV Cervical Lymph Nodes in Squamous Cell Carcinoma of the Tongue and Floor of the Mouth: A Case Series Study
ClinicalTrials.gov study NCT06169605. IPD Sharing: YES. Countries: 1. Publications: 6.
Nanoscale binding site localization by molecular distance estimation on native cell surfaces using topological image averaging
<p>Antibody binding to cell surface proteins plays a crucial role in immunity and the location of an epitope can altogether determine the immunological outcome of a host-target interaction. Techniques available today for epitope identification are costly, time-consuming, and unsuited for high-throughput analysis. Fast and efficient screening of epitope location can be useful for the development of therapeutic monoclonal antibodies and vaccines. The cellular morphology typically varies, and antibodies often bind heterogeneously across a cell surface, making traditional particle-averaging strategies challenging for accurate native antibody localization. In the present work, we have developed a method, SiteLoc, for imaging-based molecular localization on cellular surface proteins. Nanometer-scale resolution is achieved through localization in one dimension, namely the distance from a bound ligand to a reference surface, by using topological image averaging. Our results show that this method is well suited for antibody binding site measurements on native cell surface morphology and that it can be applied to other molecular distance estimations as well.</p>
Real-World Effectiveness of Afatinib (Gilotrif) Following Immunotherapy in the Treatment of Metastatic, Squamous Cell Carcinoma of the Lung: A Multi-Site Retrospective Chart Review Study in the U.S.
ClinicalTrials.gov study NCT04750824. IPD Sharing: NO. Countries: 1. Publications: 0.
Atezolizumab Before Surgery for the Treatment of Regionally Metastatic Head and Neck Squamous Cell Cancer With an Unknown or Historic Primary Site
ClinicalTrials.gov study NCT05110781. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Mesenchymal Stem Cell-derived Pleiotropic Factor in the Treatment of Donor Sites
ClinicalTrials.gov study NCT04234750. IPD Sharing: YES. Countries: 1. Publications: 0.
A Randomized Study of the Site for Growth Factor Injection for Patients Undergoing Autologous Stem Cell Transplantation
ClinicalTrials.gov study NCT00646763. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Nanoscale binding site localization by molecular distance estimation on native cell surfaces using topological image averaging
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Mapping genome-wide binding sites of Kruppel-like factor-9 by ChIP-seq in human glioblastoma stem cells.
GEO Series GSE62211. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.