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25 results for “cenote”
Dataset: Osmoregulation and hypoxia tolerance in the cenote isopod Creaseriella anops: Insights into its distribution in Karst Subterranean Estuaries
<p>This data set contains the information supporting the research article "Osmoregulation and hypoxia tolerance in the cenote isopod Creaseriella anops: Insights into its distribution in Karst Subterranean Estuaries" </p> <p>It contains Respirometry, indicators of cellular damage and Antioxidant system, critical temperatures, and Temperature induced metabolic rates of the isopod Creaseriella anops, and endemic species of the Karst Subterranean Estuaries from the Yucatan Peninsula Mexico.</p>
Cenote-Taker2 BLAST Databases
<p>Protein sequences formatted for BLAST searches. Used for taxonomy calling on viral and plasmid contigs.</p>
Use of cenotes and the cave environment by mammals on the Yucatán Peninsula, Mexico
<p><span>Mammals are important sources of nutrients to cave ecosystems, and in some circumstances, caves may be an essential resource for mammals. Few studies, however, have focused on the use of caves by terrestrial mammals. </span><span>We used camera traps at 17 cenotes on the Yucatán Peninsula to determine patterns of use by mammals. Eighteen non-volant mammal taxa were identified using cenotes, the most commonly occurring being lowland paca (<em>Agouti paca</em></span><span>), opossums (<em>Didelphis</em> spp.), white-nosed coati (<em>Nasua narica</em>), gray fox (<em>Urocyon cinereoargenteus</em>), tayra, (<em>Eira barbara)</em> and gray four-eyed opossum (<em>Philander opossum</em>); collectively these taxa accounted for 76% of all mammal records. We also recorded several felids using cenotes, including jaguar (<em>Panthera onca</em>) and puma (<em>Puma concolor</em>). Activity patterns at cenotes usually matched normal activity schedules but some species were nocturnal in the forest but diurnal at cenotes. Mammals mostly accessed cenotes to drink, but a range of activities were recorded including foraging, nesting, mating, resting and bathing.</span></p>
Use of cenotes and the cave environment by mammals on the Yucatán Peninsula, Mexico
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Cenote-Taker2 NCBI_CD hhsuite Database
<p>NCBI's CD database formatted for hhsuite searches</p>
FIGURE 5 in A new genus of speleophriid copepod (Copepoda: Misophrioida) from a cenote in the Yucatan, Mexico with a phylogenetic analysis at the species level
FIGURE 5. Majority rule (50%) consensus tree generated by PAUP, showing estimated phylogenetic relationships between genera of the family Speleophriidae, excluding the incompletely known Dimisophria.
FIGURE 4 in A new genus of speleophriid copepod (Copepoda: Misophrioida) from a cenote in the Yucatan, Mexico with a phylogenetic analysis at the species level
FIGURE 4. Mexicophria cenoticola gen. et sp. nov. Female: A, leg 1; B, leg 2; C, leg 3; D, leg 4. All scale bars = 50 Μm.
FIGURE 3 in A new genus of speleophriid copepod (Copepoda: Misophrioida) from a cenote in the Yucatan, Mexico with a phylogenetic analysis at the species level
FIGURE 3. Mexicophria cenoticola gen. et sp. nov. Female: A, rostrum, frontal view; B, maxillule, with arthrite drawn separately; C, arthrite of maxillule; D, maxilla; E, maxilliped. Male: F, antennule (in 3 parts). Scale bars: A, F = 50 Μm; B–E = 25 Μm.
FIGURE 2 in A new genus of speleophriid copepod (Copepoda: Misophrioida) from a cenote in the Yucatan, Mexico with a phylogenetic analysis at the species level
FIGURE 2. Mexicophria cenoticola gen. et sp. nov. Female: A, antennule; B, antenna; C, coxal gnathobase of mandible; D, mandibular palp. Scale bars: A = 50 Μm; B–D = 25 Μm.
FIGURE 1 in A new genus of speleophriid copepod (Copepoda: Misophrioida) from a cenote in the Yucatan, Mexico with a phylogenetic analysis at the species level
FIGURE 1. Mexicophria cenoticola gen. et sp. nov. Female: A, habitus, lateral; B, urosome ventral with fifth legs removed and caudal setae not figured; C, fifth legs, anterior. Male: D, habitus, dorsal; E, genital somite, ventral; F, fifth leg, anterior. Scale bars: A, D, E = 100 Μm; B, C, F = 50 Μm.
Buenas prácticas en cenotes y sus cuevas
<p>This publication was made with the funding of PAPIIT 2019 - IN228319 "Hacia un mapa de biodiversidad acuática de cenotes de la península de Yucatán" led by N. S. D. F. A.</p> <p><span>Este póster es producto del proyecto Cenoteando (<a href="https://www.cenoteando.mx/">https://www.cenoteando.mx/</a>), elaborado en colaboración con la Universidad Nacional Autónoma de México y Kalanbio A.C (<a href="http://www.kalanbio.org/"><span>www.kalanbio.org</span></a>)</span></p> <p><span>La información de este póster fue revisada y validada por un grupo de especialistas.</span></p> <p><strong><span lang="EN-US">CC BY-NC-ND 4.0</span></strong></p> <p><span lang="EN-US">This poster is the product of Cenoteando project (</span><span><a href="https://www.cenoteando.mx/"><span lang="EN-US">https://www.cenoteando.mx/</span></a></span><span lang="EN-US">), which was produced in collaboration with the Universidad Nacional Autónoma de México and Kalanbio A.C (</span><span><a href="http://www.kalanbio.org/"><span lang="EN-US">www.kalanbio.org</span></a></span><span lang="EN-US">)</span></p> <p><span>*Note: Due the high resolution, the document may take some time to download.*</span></p>
Data from: Predatory behavior of the cave shrimp Creaseria morleyi (Creaser, 1936) (Caridea: Palaemonidae), the blind hunter of the Yucatán cenotes, Mexico
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Figure 3 from: Angyal D, Chávez-Solís EM, Liévano-Beltrán LA, Magaña B, Simões N, Mascaró M (2020) New distribution records of subterranean crustaceans from cenotes in Yucatan (Mexico). ZooKeys 911: 21-49. https://doi.org/10.3897/zookeys.911.47694
Figure 3 ACreaseriella anops (Isopoda) BYucatalana robustispina (Isopoda); CCirolana yunca (Isopoda) DTyphlatya dzilamensis (Decapoda) ETyphlatya mitchelli (Decapoda) FTyphlatya pearsei (Decapoda) GCreaseria morleyi (Decapoda). Scale bars: 1 mm (B, C, F); 10 mm (A, D, E, G).
Figure 2 from: Angyal D, Chávez-Solís EM, Liévano-Beltrán LA, Magaña B, Simões N, Mascaró M (2020) New distribution records of subterranean crustaceans from cenotes in Yucatan (Mexico). ZooKeys 911: 21-49. https://doi.org/10.3897/zookeys.911.47694
Figure 2 ATulumella unidens (Thermosbaenacea) BStygiomysis cokei (Stygiomysida) CStygiomysis cf. holthuisi (Stygiomysida) DAntromysis cenotensis (Mysida) EMayaweckelia troglomorpha (Amphipoda) FMayaweckelia cenoticola (Amphipoda) GTuluweckelia cernua (Amphipoda). Scale bars: 1 mm (A, C, D, F, G); 10 mm (B, E).
Figure 1 from: Angyal D, Chávez-Solís EM, Liévano-Beltrán LA, Magaña B, Simões N, Mascaró M (2020) New distribution records of subterranean crustaceans from cenotes in Yucatan (Mexico). ZooKeys 911: 21-49. https://doi.org/10.3897/zookeys.911.47694
Figure 1 Map of the state of Yucatan and location of the 32 investigated cenotes. Details of the numbered cenotes can be found in Table 1. The light area represents the Geohydrological Reserve in Yucatan, while the dark area depicts the urban extension of the city of Merida.
Supplementary material 1 from: Díaz-Hernández JA, Ugalde-Silva P, Berriozabal-Islas C, Novelo A, Hernández-Uc J, Arana-May A, Pech-Patrón SD, Nava-Jiménez IA, Borbolla-Vázquez J (2023) Aquatic microdiversity from urban cenotes in Cancun, Quintana Roo, Mexico. Subterranean Biology 46: 129-145. https://doi.org/10.3897/subtbiol.46.108082
Kinds of cenotes sampled
Supplementary material 2 from: Alter SE, Arroyave J (2022) Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico. Metabarcoding and Metagenomics 6: e89857. https://doi.org/10.3897/mbmg.6.89857
OTU (Operational Taxonomic Unit) table
Supplementary material 1 from: Alter SE, Arroyave J (2022) Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico. Metabarcoding and Metagenomics 6: e89857. https://doi.org/10.3897/mbmg.6.89857
Summary results from initial eDNA raw data processing
Database files for Cenote-Taker 3
<p><strong>hmmscan_DBs.tgz</strong> = tarball of compiled HMM databases (h3m files) (updated for hmm DB v3.1.1)</p> <p><strong>refseq_virus_prot.fasta.gz</strong> = tax database refseq: refseq virus protein seqs for mmseqs2 tax database</p> <p><strong>refseq_virus_prot_taxids.mmseqs_fmt.tsv</strong> = tax database refseq: tax info required for mmseqs2 refseq tax database annotation</p> <p><strong>ct3_hallmark_nr_cd90_refseq.faa.gz</strong> = tax database hallmark: hallmark proteins (per Cenote-Taker 3 search) from --- Genbank clustered NR virus (filtered for seqs with taxonomic labels at genus, family, and class level) (clustered at 90% AAI with cd-hit) AND refseq virus hallmark proteins (per Cenote-Taker 3 search)</p> <p><strong>ct3_hallmark_nr_cd90_refseq.prot_taxids.mmseqs_fmt.tsv</strong> = tax database hallmark: tax info required for mmseqs2 hallmark tax database annotation</p> <p><strong>cddid_all.tbl</strong> = CDD functional annotation table</p> <p><strong>viral_cdds_and_pfams_191028.txt</strong> = list of domain accessions commonly found in virus genomes</p> <p><strong>CT3_hmms_v3.1.1_flatfiles.tar.gz</strong> = tarball of compiled HMM databases (FLAT FILES) (updated for hmm DB v3.1.1)</p> <p> </p>
Figures 3-10 from: Grego J, Angyal D, Beltrán LAL (2019) First record of subterranean freshwater gastropods (Mollusca, Gastropoda, Cochliopidae) from the cenotes of Yucatán state. Subterranean Biology 29: 79-88. https://doi.org/10.3897/subtbiol.29.32779
Figures 3-10 3–6: Mexicenoticaxochii sp. n. 46 m deep from Cenote Xoch, Cenotillo, Yucatán, Mexico (holotype, HNHM 104156) 7–10: M.xochii sp. n. (paratype, coll. JG).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.