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ShareScore release 0.9.0
Dataset results
25 results for “chronic social stress”
Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling: single cell RNA sequencing data
<p>Meningeal single cell RNA sequencing data</p> <p>Meningeal samples were collected from both dorsal and ventral skull, avoiding inclusion of choroid plexus. Samples were digested in 2.5 mg/mL Collagenase D (Cat. #11088858001; Roche) and 12.5 μL of 0.5 mg/mL DNAseI (Cat. #L5002139; Worthington), put on a shaker at 370C for 30 m, diluted with cold HBSS + 0.1% BSA, and mashed through a 70 μm cell strainer prior to sorting.</p> <p>Data represent live, nucleated, singlet cells (DAPI-DRAQ5+) sorted on a BD FACS Aria Fusion into HBSS + 10% FBS prior to droplet encapsulation using 10x Genomics’ Drop-seq platform (Chromium v2).</p> <p>10X chip lane is indicate by 'group' column</p> <p>Group 1 = 4 pooled homecage control (unstressed) mice</p> <p>Group 2 = 4 pooled homecage control (unstressed) mice</p> <p>Group 3 = 4 pooled mice exposed to chronic social defeat for 14 days; tissue was collected 2 hours following final defeat</p> <p>See the following repositories for data processing:</p> <p><a href="https://github.com/maryellenlynall/2019_bcell_stress/blob/master/bcellstress20.Rmd">https://github.com/maryellenlynall/2019_bcell_stress/</a> (processing from raw files starts at bcellstress020.Rmd)</p> <p><a href="https://github.com/staceykigar/meningeal_neut/">https://github.com/staceykigar/meningeal_neut/</a></p> <p>We also provide a processed dataset (processed.RData) with assays 'counts' and 'logcounts' which is the processed single cell object saved at line "# Save object for upload to Zenodo" in script <a href="https://github.com/staceykigar/meningeal_neut/">https://github.com/staceykigar/meningeal_neut/</a>neutrophilstress01.Rmd </p> <p>Cluster annotations are in sce$Annotation</p> <p>Neutrophil subcluster annotations are in sce$Subcluster</p> <p>Sample condition is in sce$cond, where "HC" indicates homecage control and "SD" indicates chronic social defeat</p> <p>10X chip lane is in sce$group</p>
Impact of prolonged chronic social isolation stress on behavior and multifractal complexity of metabolic rate in Octodon degus
<p>We investigated the effects of prolonged chronic social isolation stress on behavioral, cognitive, and physiological performance in the social, long-lived rodent <em>Octodon degus</em>. Degu pups were separated into two social stress treatments: control (CTRL) and chronically isolated (CI) individuals from post-natal and post-weaning until adulthood. We quantified anxiety-like behavior and cognitive performance with behavioral tests. Additionally, we measured their basal metabolic rate (BMR). Data include behavioral tests and physiological traits (body mass and Basal Metabolic Rate).</p>
Gene expression analysis of mouse brain regions after chronic social defeat stress (CSDS)
GEO Series GSE109315. Mus musculus. 88 samples. Type: Expression profiling by high throughput sequencing.
N6-methyladenosine modification in chronic stress response due to social hierarchy positioning of mice
GEO Series GSE161198. Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing.
Chronic social stress induces p16-mediated senescent cell accumulation in mice
GEO Series GSE278620. Mus musculus. 90 samples. Type: Other.
Gene expression analysis of mouse BNST and blood cells after chronic social defeat stress (CSDS)
GEO Series GSE122840. Mus musculus. 77 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Molecular and Cellular Mechanisms for Differential Effects of Chronic Social Isolation Stress in Males and Females
GEO Series GSE198725. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
RNAseq anaysis of hippocamal parvalbumin-positive interneurons in mice exposed to chronic social defat stress
GEO Series GSE184027. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Expression data from mouse meninges - home cage (HC) and chronic social defeat (SD) stress mice
GEO Series GSE275966. Mus musculus. 14 samples. Type: Expression profiling by array.
Effect of chronic social defeat stress (CSDS) on gene expression in wild-type mice and in Neurensin-2 knockout mice.
GEO Series GSE274515. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing.
Effect of acute and chronic social stress on hippocampal transcriptome in mice.
GEO Series GSE59070. Mus musculus. 24 samples. Type: Expression profiling by array.
Chronic social defeat stress induces meningeal neutrophilia via type I interferon signaling in males
GEO Series GSE301684. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Effects of Lutein on Learning and Memory in Chronically Stressed Subjects and in an Acute Stressful Situation (TSST - Trier Social Stress Test): A Randomized, Double-blind, Placebo-controlled Trial)
ClinicalTrials.gov study NCT02257801. IPD Sharing: Not stated. Countries: 1. Publications: 0.
DNA methylation profiling of germ cells from mice exposed to chronic social defeat stress
GEO Series GSE288729. Mus musculus. 6 samples. Type: Methylation profiling by high throughput sequencing.
NG2 glia-derived GABA release tunes inhibitory synapses and contributes to anxiety-like behavior in chronic social defeat stress
GEO Series GSE162049. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiling of prefrontal cortices of mice subjected to acute and chronic social stress
GEO Series GSE64734. Mus musculus. 20 samples. Type: Expression profiling by array.
Expression (Gene) in the endothelial cells of the mouse female prefrontal cortex (PFC) following 10-day chronic social stress exposure [Female_CSDS]
GEO Series GSE173794. Mus musculus. 18 samples. Type: Expression profiling by array.
Expression (Gene) in the endothelial cells of the mouse female prefrontal cortex (PFC) following 10-day chronic social stress or 6-day subchronic variable stress exposure [Female_CSDS_vs_SCVS]
GEO Series GSE173796. Mus musculus. 29 samples. Type: Expression profiling by array.
Expression (Gene) in the endothelial cells of the mouse female prefrontal cortex (PFC) following 10-day chronic social stress or 6-day subchronic variable stress exposure was compared to male [Male_SS
GEO Series GSE173797. Mus musculus. 29 samples. Type: Expression profiling by array.
Effects of Chronic Social Stress on the transcriptome of BA-NAc neurons
GEO Series GSE216587. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.