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Data for the manuscript "Direct visualization of colloid transport over natural heterogeneous and artificial smooth rock surfaces"

<p>The files contain the data used to produce the figures in the manuscript &quot;<strong>Direct visualization of colloid transport over natural heterogeneous and artificial smooth rock surfaces</strong>&quot; by Borgman, Be&#39;er, and Weisbrod.</p> <p>Included in the data set:</p> <ol> <li>ImageAnalysesAndPlots.m: A MATLAB script&nbsp;to generate the figures from the included images and data files.</li> <li>myCmap.mat: A custom set of colors for the images.</li> <li>LH_btc.csv,&nbsp;LH_b_btc.csv,&nbsp;HH_btc.csv,&nbsp;HH_b_btc.csv: Data for the breakthrough curves.</li> <li>LH_t=360min.czi,&nbsp;HH_t=300min.czi: Final images from the experiments, from which the residual surface fluorescence is calculated.</li> <li>LHSurfTopo.csv,&nbsp;HHSurfTopo.csv: Tables containing the profilometer scan data.</li> <li>LH, HH: Folders containing the images for the colloid displacement front</li> <li>Exp01-Exp04: Images for calculating the dispersion coefficient&nbsp;</li> <li>PlotVelocities2.m: A script for plotting the calculated velocity fields</li> <li>velocity_magnitude_HH_flux_boundary.txt/velocity_magnitude_LH_flux_boundary.txt: The data files for the velocity fields.</li> </ol> <p>For the .czi files, it&#39;s necessary to use the Bio-Formats for MATLAB <a href="https://docs.openmicroscopy.org/bio-formats/6.1.0/users/matlab/index.html">package</a>.</p>