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87 results for “combined phylogenetic analysis”
Phlorest phylogeny derived from Birchall et al. 2016 'A combined comparative and phylogenetic analysis of the Chapacuran language family'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Birchall, Joshua, Michael Dunn, and Simon J. Greenhill. 2016. A combined comparative and phylogenetic analysis of the Chapacuran language family. International Journal of American Linguistics 82 (3): 255–84. doi: 10.1086/687383</p> </blockquote>
CLDF dataset derived from Birchall et al.'s "A Combined Comparative and Phylogenetic Analysis of the Chapacuran Language Family" from 2016
<p>Cite the source of the dataset as:</p> <blockquote> <p>Birchall J, Dunn M, & Greenhill SJ. 2016. A Combined Comparative and Phylogenetic Analysis of the Chapacuran Language Family. International Journal of American Linguistics 82(3). 255–284.</p> </blockquote>
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales.
Figure 9 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 9. Strict consensus cladogram of 24 most parsimonious trees (length = 345; consistency index = 0.499; retention index = 0.474; rescaled consistency index = 0.237) from the analysis using the morphological data set. Bootstrap support values are presented above and Bremer support values are presented below the branch they refer to. Note that the crown clade Coracioidea (Coraciidae + Brachypteraciidae) is not labelled; the position of Geranopterus alatus with respect to this clade is unresolved. †, extinct taxa; NA, North American Coracii.
Figure 6 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 6. Distal wing elements of Paracoracias in dorsal view. Anatomical abbreviations: I:1, left manual phalanx I:1; II:1, manual phalanx II:1; II:2, manual phalanx II:2; cmc, carpometacarpus; r, radius; u, ulna; ul, ulnare.
Figure 4 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 4. Cervical series, thoracic region, and sacrum of Paracoracias. Anatomical abbreviations: c, coracoid; cev, cervical vertebrae; f, frontal; fe, femur; fu, furcula; h, humerus; i, ischium; k, keel; lp, lateral process of sternum; p, pubis; r, radius; s, scapulae; sa, sacrum; u, ulna; up, uncinate processes.
Figure 2 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 2. Holotype specimen of Paracoracias occidentalis (AMNH 30572). Anatomical abbreviations: II:1, manual phalanx II:1; cev, cervical vertebrae; cmc, carpometacarpus; cv, caudal vertebrae; f, frontal; fe, femur; h, humerus; k, keel; lp, lateral process of sternum; m, mandible; pe, pelvis; pmx, premaxilla; r, radius; s, scapulae; tbt, tibiotarsus; tmt, tarsometatarsus; u, ulna.
Figure 5 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 5. Pectoral girdle and limbs of Paracoracias. Anatomical abbreviations: I:1, manual phalanx I:1; II:1, manual phalanx II:1; II:2, manual phalanx II:2; c, coracoid; cmc, carpometacarpus; fu, furcula; h, humerus; lp, lateral process of sternum; r, radius; s, scapulae; t, tracheal ring; tbt, tibiotarsus; u, ulna; ul, ulnare.
Figure 3 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 3. Skull of Paracoracias. Anatomical abbreviations: cv, caudal vertebrae; f, frontal; hy, hyoid; j, jugal; l, lacrimal; m, mandible; na, naris; pal, palatine; pmx, premaxilla; por, postorbital process; pt, pterygoid; py, pygostyle; scl, sclerotic ring.
Figure 7 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 7. Pelvic limb of Paracoracias in lateral view. Anatomical abbreviations: I:1, pedal phalanx I:1; II:1, pedal phalanx II:1; fb, fibula; fe, femur; h, humerus; tbt, tibiotarsus; tmt, tarsometatarsus; u, ulna.
Figure 8 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 8. Strict consensus cladogram of two most parsimonious trees (length = 4882; consistency index = 0.424; retention index = 0.798; rescaled consistency index = 0.340) from the combined analysis using all morphological and sequence data (ND2, RAG-1, and c-myc). Bootstrap support values are presented above and Bremer support values are presented below the branch they refer to. Note that the crown clade Coracioidea (Coraciidae + Brachypteraciidae) is not labelled; the position of Geranopterus alatus with respect to this clade is unresolved. †, extinct taxa; NA, North American Coracii.
Fig. 5 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 5. Holotype of Winitia thailandana Chaowasku & Aongyong sp. nov. at CMUB.
Figure 1 in Combined phylogenetic analysis of a new North American fossil species confirms widespread Eocene distribution for stem rollers (Aves, Coracii)
Figure 1. Map showing the distribution of extant and extinct Coracii.
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
Fig. 1 in Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa)
Fig. 1 Phylograms obtained from maximum likelihood (ML) analyses of 182 euglenozoan taxa with new 18S rDNA sequences boxed and most ingroup taxa pruned to major groupings, sequences of Heterolobosea and Jakobida were used as outgroup. Congruent Bayesian inference (BI) posterior probability values>0.50 were mapped onto both ML trees and are
Fig. 4 in Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa)
Fig. 4 Schematic phylogram combining molecular and morphological findings corroborating phylogenetic position of Entosiphon as sister group of Helicales within Euglenida. States of key characters are illustrated tabularly: black squares code presence and blanks absence, e.g., paramylon is present only in Entosiphon and Helicales. Unpaired base in 18S rDNA helix 44 is present in primordial petalomonads and kinetoplastids, but absent in more derived taxa within respective groups. White Roman numerals depict heterogeneous dispersal of different types of feeding apparatuses (FA) according to Triemer and Farmer (1991), white Arabic numerals count for number of rods in FA. Heterolobosea and Jakobida represent outgroup taxa
FIGURE 2 in Detecting the phylogenetic position of Bovista acuminata (Agaricales, Basidiomycota) by an ITS-LSU combined analysis: the new genus Bryoperdon and revisitation of Lycoperdon subgen. Apioperdon
FIGURE 2. Bryoperdon acuminatum. Fresh basidiomes (TO HG191016). a in field; b in studio; c particular of the exoperidium; d particular of the exoperidium and ellipsoid-lacerate stoma. Scale bars: a, b = 10 mm; c = 5 mm; d = 2 mm. Pictures by A. Vizzini.
FIGURE 1 in Detecting the phylogenetic position of Bovista acuminata (Agaricales, Basidiomycota) by an ITS-LSU combined analysis: the new genus Bryoperdon and revisitation of Lycoperdon subgen. Apioperdon
FIGURE 1. Bayesian phylogenetic analysis based on the combined nrITS/nrLSU dataset of selected Lycoperdaceae. BPP values ≥ 0.7 are shown on the branches. For each sequenced taxon the Genbank number is given. The newly sequenced collections are in bold.
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 in Phylogenetic analysis of the Pantomorus-Naupactus complex (Coleoptera: Curculionidae: Entiminae) from North and Central America
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 morphological characters coded as additive. Bootstrap values over 50% below the corresponding branches.
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OpenNeuro
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