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26 results for “common marmoset”
Dataset for "Intra-intestinal analysis of the functional activity of microbiomes and its application to the common marmoset intestine"
<p>Dataset:</p> <p>data1_ExpressionProfile.xlsx: gene expression profile</p> <p>data2_AnnotationProfile.xlsx: gene annotation profile</p>
Intra-intestinal analysis of the functional activity of microbiomes and its application to the common marmoset intestine
<p>Supplementary Table Captions:</p> <p>Table S7. Assignment of genes to unknown gene clusters</p> <p>Table S8. AUC used to determine parameters for covariation analysis by benchmarking</p> <p>Table S9. Linked unknown gene clusters</p> <p>Table S10. Information on common marmosets</p> <p>Table S11. Dual index sequences</p> <p>Table S12. Sequencing statistics</p> <p>Table S13. RIN score of total RNA samples</p> <p>Table S14. Top 20 bacterial species in taxonomic profiling</p> <p>Table S15. Number of genes covered by the nonchimaeric genome in each parameter at the assembly step</p> <p>Table S16. Number of genes covered by the nonchimaeric genome in each parameter at the merge step</p> <p>Table S17. Distance between intestinal sites</p>
Common marmosets are sensitive to simple dependencies at variable distances in an artificial grammar
<p>Video data of each trial in a study with common marmoset monkeys.</p> <p>Its current title is "Common marmosets are sensitive to simple dependencies at variable distances in an artificial grammar".</p> <p>Abstract of the publication is as below.</p> <p>Recognizing that two elements within a sequence of variable length depend on each other is a key ability in understanding the structure of language and music. Perception of such interdependencies has previously been documented in chimpanzees in the visual domain and in human infants and common squirrel monkeys with auditory playback experiments, but it remains unclear whether it typifies primates in general. Here, we investigated the ability of common marmosets (<em>Callithrix jacchus</em>) to recognize and respond to such dependencies. We tested subjects in a familiarization-discrimination playback experiment using stimuli composed of pure tones that either conformed or did not conform to a grammatical rule. After familiarization to sequences with dependencies, marmosets spontaneously discriminated between sequences containing (‘consistent’) and lacking dependencies (‘inconsistent’), independent of stimulus length. Marmosets looked more often to the sound source when hearing sequences consistent with the familiarization stimuli, as previously found in human infants. Crucially, looks were coded automatically by computer software, avoiding risk of human bias. Our results support the hypothesis that the ability to perceive dependencies at variable distances was already present in the common ancestor of all anthropoid primates (<em>Simiiformes</em>).</p>
Preprocessed auditory task-fMRI files of common marmoset
<p>Preprocessed auditory task-fMRI files of common marmoset.</p> <p>Original data was acquired by https://doi.org/10.1016/j.jneumeth.2022.109737</p> <p>Related github repository is https://github.com/takuto-okuno-riken/oku2023dmn</p>
Video data of spontaneous responses of common marmosets (Callithrix jacchus) on 3D and 2D cricket stimuli.
<p>The degree to which nonhuman animals recognize 2D images as representing the corresponding real objects remains debated. The common marmoset monkey (<em>Callithrix jacchus</em>) is often cited as a species which spontaneously shows natural behaviors to 2D images, e.g. grabbing behaviors to insects and fear responses to snakes. In this study, ten marmosets from two different groups were tested with a live cricket, a 3D plastic model, a monochrome image and two video recordings of the cricket.<br> The monkeys showed the grabbing behavior to the real cricket and the 3D plastic model, but to none of the 2D images. Our experiment suggests that depth information is the most important factor eliciting predatory behavior from the marmosets. In behavioral experiments, monkeys' responses toward 2D images of real objects should be carefully interpreted.</p> <p>All session videos are uploaded here with a 'LOG.txt' file which has sessions & timestamps when coded behaviors occurs.</p>
Distribution. SC Brazil in the states of Maranhao, Tocantins (E of the Rio Araguaia), SW tip of Piaui, Bahia (S of the rios Grande and Sao Francisco), Goias, Minas Gerais, N of Sao Paulo (N of the rios Tieté and Piracicaba), and NE Mato Grosso do Sul (E of the Serra de Maracaju to the level of the rios Pardo or Taquaracu, and right bank tributaries of the Rio Parana). Along with the Common Marmoset (C. jacchus), it has been introduced to the more humid Atlantic Forest on the coast of the states of Espirito Santo, Rio de Janeiro, and Santa Catarina. in Callitrichiade
Distribution. SC Brazil in the states of Maranhao, Tocantins (E of the Rio Araguaia), SW tip of Piaui, Bahia (S of the rios Grande and Sao Francisco), Goias, Minas Gerais, N of Sao Paulo (N of the rios Tieté and Piracicaba), and NE Mato Grosso do Sul (E of the Serra de Maracaju to the level of the rios Pardo or Taquaracu, and right bank tributaries of the Rio Parana). Along with the Common Marmoset (C. jacchus), it has been introduced to the more humid Atlantic Forest on the coast of the states of Espirito Santo, Rio de Janeiro, and Santa Catarina.
On following pages 19 Buffy-headed Marrnoset (Cal/: rhnx flawcepsá 20 Geoffroy s Tuftedear Mamıoset (Ca/Iırhnx gooflroyı), 21 Wıed s Black tufted-ear Mannoset (Callıthrıx kuhlıı), 22 Block-tufted-ear Marmoset (Callnhnx penıcıllata) 23 Common Mannoset (Calhthnx ¡aochusf in Callitrichiade
On following pages 19 Buffy-headed Marrnoset (Cal/: rhnx flawcepsá 20 Geoffroy s Tuftedear Mamıoset (Ca/Iırhnx gooflroyı), 21 Wıed s Black tufted-ear Mannoset (Callıthrıx kuhlıı), 22 Block-tufted-ear Marmoset (Callnhnx penıcıllata) 23 Common Mannoset (Calhthnx ¡aochusf
Training dataset for marmo3Dpose, related to the paper entitled "Deciphering social traits and pathophysiological conditions from natural behaviors in common marmosets"
<p>The training dataset for marmosets' 3D pose estimation developed for Kaneko and Matsumoto et al. 2024: Deciphering social traits and pathophysiological conditions from natural behaviors in common marmosets.</p> <p>Please visit</p> <p>Github: <a href="https://github.com/PrimatoModelling/marmo3Dpose">https://github.com/PrimatoModelling/marmo3Dpose</a></p> <p>Journal article: <a href="https://www.cell.com/current-biology/fulltext/S0960-9822(24)00676-6">https://www.cell.com/current-biology/fulltext/S0960-9822(24)00676-6</a></p>
Data from: Expression of taste signal transduction molecules in the caecum of common marmosets
The extraoral presence of taste signal transduction proteins has recently been reported in rodents and humans. Here, we report for the first time the presence of these signal transduction proteins in the caecum of a non-human primate, the common marmoset. Quantitative RT-PCR data on the gene expression of taste signal transduction molecules (gustducin and TRPM5) in common marmosets suggested high expression in the caecum, which was not observed in other non-human primates. Immunohistochemical analysis confirmed the specific presence of gustducin and taste receptors in marmoset caecal cells. These results may relate to the specific feeding behaviour of marmosets, which consume plant exudates, primarily gums.
MarmAudio: A large annotated dataset of vocalizations by common marmosets
<p>We present here MarmAudio, a database of common marmoset vocalizations, which were continuously recorded with a sampling rate of 96 kHz from a stabulation room housing simultaneously ~20 marmosets in three cages. The dataset comprises more than 800,000 files, amounting to 253 hours of data collected over 40 months. Each recording lasts a few seconds and captures the marmosets' social vocalizations, encompassing their entire known vocal repertoire during the experimental period. Around 215,000 calls are annotated with the vocalization type. We validated our dataset by sampling 700 representative recordings and cross-examining them with four experts.</p>
Data and code supporting the main finding of Kaneko and Matsumoto et al. 2024 "Deciphering social traits and pathophysiological conditions from natural behaviors in common marmosets"
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Data from: Expression of taste signal transduction molecules in the caecum of common marmosets
Open the record for dataset details and reuse information.
Maternal weight affects placental DNA methylation of genes invovled in metabolic pathways in the common marmoset monkey (Callithrix jacchus)
GEO Series GSE143200. Callithrix jacchus. 34 samples. Type: Methylation profiling by high throughput sequencing.
Small RNA and gene expression profile in the adult testes of the common marmoset
GEO Series GSE52927. Callithrix jacchus. 3 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Induction of primordial germ cell-like cells from common marmoset embryonic stem cells by inhibition of WNT and retinoic acid signaling
GEO Series GSE201320. Callithrix jacchus. 54 samples. Type: Expression profiling by high throughput sequencing.
Rapid and efficient conversion of common marmoset fibroblasts into mature and functional neurons by overexpression of ASCL1 and microRNA-9/9*-124
GEO Series GSE152433. Callithrix jacchus. 10 samples. Type: Expression profiling by high throughput sequencing.
Methylation studies in common marmoset
GEO Series GSE190663. Callithrix jacchus; Rattus norvegicus; Homo sapiens; Mus musculus. 96 samples. Type: Methylation profiling by array.
Establishment of induced pluripotent stem cells from common marmoset fibroblasts by RNA-based reprogramming
GEO Series GSE152259. Callithrix jacchus. 5 samples. Type: Expression profiling by high throughput sequencing.
Common Marmoset Gut Microbiome Profiles in Health and Intestinal Disease
GEO Series GSE156839. Callithrix jacchus. 12 samples. Type: Expression profiling by high throughput sequencing.
Establishing a common marmoset induced pluripotent stem cell line NM-iPS by an all-in-one episomal vector approach
GEO Series GSE164497. Callithrix jacchus. 1 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.