Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
787
datasets available to search
ShareScore release 0.9.0
Dataset results
787 results for “conjugation”
Invasive pneumococcal diseases in children and adults before and after introduction of the 10-valent pneumococcal conjugate vaccine into the Austrian national immunization program
<p>The dataset contains case-based data on invasive pneumococcal disease in Austria, 2009/01 to 2017/02, by year and month of diagnosis, serotype and clinical presentation. Cases are anonymised by using a random ID.</p>
Data set for the journal article: Site-Specific Protein Ubiquitylation Using an Engineered, Chimeric E1 Activating Enzyme and E2 SUMO Conjugating Enzyme Ubc9
<p>Mutations observed in evolved chimeric E1 variants. Top row (1.X to 4.X) describes rounds of evolutions with respective variants in the round. </p> <p>Residues that appear to be enriched are highlighted with gray fill. Star (★) marks residues subjected to saturation mutagenesis in the round 4.</p>
Supplements for "Understanding the interaction between a human transferrin receptor aptamer-short double stranded RNA conjugate and its cell membrane target by in silico methods"
<p>Supplements for "Understanding the interaction between a human transferrin receptor aptamer-short double stranded RNA conjugate and its cell membrane target by in silico methods". </p> <p>This supplement includes the following files:</p> <p> </p> <p>1. Structures of the most stable Protein-Aptamer complexes predicted from HADDOCK</p> <p>Haddock_Cluster1.pdb <br> Haddock_Cluster2.pdb <br> Haddock_Cluster3.pdb </p> <p>2. Structure of the most stable conformation aligned with Protein-transferring complex PDB</p> <p>cluster1_aligned.pdb <br> transferrin_aligned.pdb </p> <p>3. MM-GBSA decomposition analysis of the three replicas for Protein-Aptamer</p> <p>aptamer_new_rep01_Decomp.dat <br> aptamer_new_rep02_Decomp.dat <br> aptamer_new_rep03_Decomp.dat </p> <p>4. MM-GBSA decomposition analysis of the three replicas for Protein-Aptamer-Conjugate<br> conjugate_new_rep01_Decomp.dat <br> conjugate_new_rep02_Decomp.dat <br> conjugate_new_rep03_Decomp.dat <br> </p> <p><br> <br> </p>
Multiplexed Staining Dataset - OMAP 5 - Liver-Lanthanides-conjugated antibodies and C60-secondary ion mass spectrometry imaging
<p>This dataset contains images of multiplexed antibody panel on a human pediatric liver section including the nuclear marker and antibodies conjugated with lanthanides tags. The dataset is one example of serial experiments of multiplexed antibody staining and imaging. The antibody panel targets the major cell types and tissue structures in the liver tissue. Data acquisition was performed using single multiplexing imaging by C60-secondary ion mass spectrometry.</p> <p> </p>
Novelty and emergent patterns in sperm: morphological diversity and evolution of spermatozoa and sperm conjugation in ground beetles (Coleoptera: Carabidae)
<p>The beetle family Carabidae, with about 40,000 species, exhibits enough diversity in sperm structure and behavior to be an excellent model system for studying patterns and processes of sperm evolution. We explore their potential, documenting<b> </b>sperm form in 177 species of ground beetles using light microscopy and collecting data on 1 qualitative and 7 quantitative sperm phenotypic traits. Our sampling captures 61% of the tribal-level diversity of ground beetles. These data highlight the notable morphological diversity of sperm in ground beetles and suggest that sperm in the group have dynamic evolutionary histories with much morphological innovation and convergence. Sperm vary among species in total length (48–3,400mm), head length (0.5–270mm), and head width (0.2–6.3mm). Most ground beetles make sperm with heads that are indistinct from the flagella at the gross morphological level. However, some or all <i>Omophron</i>,<i>Trachypachus</i>, and Dyschiriini make broad-headed sperm that show morphological differences between species. Most ground beetles package their sperm into groups of sperm, termed conjugates, and ground beetles show variation in conjugate form and in the number and arrangement of sperm in a conjugate. Most ground beetles make sperm conjugates by embedding their sperm in a hyaline rod or spermatostyle. The spermatostyle is remarkably variable among species and varies in length from 17–41,000mm. Several unrelated groups of ground beetles make only singleton sperm, including Nebriinae, Cicindelinae, many Trechinae, and the tribe Paussini. In order to study patterns in sperm evolution, we combine these data with a low-resolution phylogeny of ground beetles. Results from modern comparative analyses suggest the following: sperm differ from conjugates in some aspect of their underlying evolutionary process, sperm have influenced conjugate evolution and vice versa, and conjugation with a spermatostyle likely evolved early within the history of Carabidae and it has been lost independently at least three times.</p>
Supporting files for Turečková et al. 2024 "A New Abscisic Acid Conjugate, ABA‑L‑Glutamate, Determined in Different Plant Species by Combined Immunoaffinity Chromatography‑Tandem Mass Spectrometry"
Open the record for dataset details and reuse information.
Self-Assembled Proteomimetic (SAP) with Antibody-like Binding from Short PNA-Peptide Conjugates
<p><span><span>Affinity proteins </span><span>based on </span><span>a </span><span>three-helix </span><span>bundle</span> <span>(</span><span>affibodies, </span><span>alphabodies</span><span> and computationally </span></span><span><span>de novo</span></span><span> <span>designed</span><span> ones)</span><span> have shown to be a general platform to discover binders with properties reminiscent of </span><span>antibodies</span><span>, combining </span><span>high </span><span>target </span><span>specificity</span><span> with </span><span>affinities reaching well below</span> <span>the </span><span>nanomolar</span><span>.</span> <span>Herein</span><span>,</span><span> we report a new strategy</span><span>, coined self-assembled proteomimetic (SAP)</span><span>,</span><span> to mimic </span><span>such</span><span> three-helix bundle</span><span> architecture with a hybridization-enforced two-helix </span><span>coiled</span> <span>coil</span><span> that is obtained by templated</span> <span>native chemical ligation (</span><span>T-</span><span>NCL) of PNA-peptide conjugates.</span> <span>This SAP </span><span>strategy</span> <span>stands out by</span><span> its</span><span> synthetic accessibility reducing the length on the longest </span><span>synthetic</span><span> peptide to </span><span>less than 30 amino acids, readily attainable by standard SPPS methodologies</span><span>. We show that the </span><span>T</span><span>-NCL dramatically accelerates the </span><span>ligation</span><span>, enabling this chemistry to </span><span>proceed</span> <span>in a combinatorial fashion </span><span>at</span><span> low</span> <span>micromolar</span><span> concentration</span><span>s</span><span>.</span> <span>We </span><span>demonstrate</span> <span>that small </span><span>combinatorial </span><span>libraries of </span><span>SAP</span><span>s</span><span> can be prepared in one operation and used directly in </span><span>affinity selection</span><span>s</span><span> against a target of interest </span><span>with an</span><span> LC-MS </span><span>analysis</span><span> of the fittest binders</span><span>.</span> <span>Moreover, we </span><span>show</span><span> that </span><span>the underlying</span> <span>design</span><span> paradigm</span><span> is functional for</span><span> SAPs based on structurally distinct three-helix peptides </span><span>aimed at</span><span> different </span><span>therapeutic </span><span>targets, namely</span> <span>HER2 </span><span>and</span><span> spike’s RBD</span><span>,</span></span> <span><span>reaching picomolar </span><span>affinities</span></span><span><span>. We further </span><span>illustrate </span><span>that the</span> <span>affinity </span><span>of the </span><span>S</span><span>AP</span><span> can be allosterically regulated using a toehold displacement</span><span> of the hybridizing PNAs</span><span> to disrupt the </span><span>coiled coil</span><span> stabilization.</span> <span>Finally, w</span><span>e show that </span><span>an RBD-targeting </span><span>SAP effectively inhibits viral </span><span>entry </span><span>of SARS-CoV-2</span> <span>with an IC</span></span><span><span>50</span></span><span><span> of </span><span>2.8</span> <span>nM</span><span>.</span></span><span> </span></p>
Research data supporting "Post-polymerisation functionalisation of conjugated polymer backbones and its application in multi-functional emissive nanoparticles"
<p>Research data supporting the publication:</p> <p>Creamer A. et al., "Post-polymerisation functionalisation of conjugated polymer backbones and its application in multi-functional emissive nanoparticles",<em> Nature Communications</em><strong>, 9</strong>:3237 (2018).</p>
Research data supporting "Duplex-Specific Nuclease-Amplified Detection of MicroRNA Using 2 Compact Quantum Dot−DNA Conjugates"
<p>Raw research data supporting the publication:</p> <p>Wang, Y. et al., 2018, ACS Applied Materials & Interfaces, "Duplex-Specific Nuclease-Amplified Detection of MicroRNA Using 2 Compact Quantum Dot−DNA Conjugates", DOI: 10.1021/acsami.8b07250.</p>
FIGURE 4 in A typical enzyme activity for glutathione conjugation indicates exposure of pacu to pollutants
FIGURE 4 |GST specific activities in kidney cytosol from Piaractus mesopotamicus injected with benzo[a]pyrene (15 mg kg-1). Assays were carried out with 1-chloro-2,4-dinitrobenzene (CDNB), ethacrynic acid (ETHA) or 2-dichloro-4-nitrobenzene (DCNB) 7 and 14 days after the injection. Bars represent the means ± S.E.M. of determinations from nine fish injected with corn oil (clear) or benzo[a]pyrene (dark grey). Significant different from controls are indicated as *(P <0.05) and ***(P <0.001).
FIGURE 3 in A typical enzyme activity for glutathione conjugation indicates exposure of pacu to pollutants
FIGURE 3 |GST specific activities in liver cytosol from Piaractus mesopotamicus injected with benzo[a]pyrene (15 mg kg-1). Assays were carried out with 1-chloro-2,4-dinitrobenzene (CDNB), ethacrynic acid (ETHA) or 2-dichloro-4-nitrobenzene (DCNB) 7 and 14 days after the injection. Bars represent the means ± S.E.M. of assays from nine fish injected with corn oil (clear) or benzo[a]pyrene (dark grey). Significant different from controls are indicated as ***(P <0.001).
FIGURE 2 in A typical enzyme activity for glutathione conjugation indicates exposure of pacu to pollutants
FIGURE 2 |GST specific activities in kidney cytosol from Piaractus mesopotamicus injected with methyl parathion (8 mg kg-1). Assays were carried out with 1-chloro-2,4-dinitrobenzene (CDNB), ethacrynic acid (ETHA) or 2-dichloro-4-nitrobenzene (DCNB) at 24, 48 and 96 hours after the injection. Bars represent the means ± S.E.M. of assays from five fish injected with corn oil (clear) or methyl parathion (dark grey).
FIGURE 1 in A typical enzyme activity for glutathione conjugation indicates exposure of pacu to pollutants
FIGURE 1 |GST specific activities in liver cytosol from Piaractus mesopotamicus injected with methyl parathion (8 mg kg-1). Assays were carried out with 1-chloro-2,4-dinitrobenzene (CDNB), ethacrynic acid (ETHA) or 2- dichloro-4-nitrobenzene (DCNB) at 24, 48 and 96 hours after the injection. Bars represent the means ± S.E.M. of assays from five fish injected with corn oil (clear) or methyl parathion (dark grey). Significant differences from controls are indicated as **(P <0.01).
UV mutagenesis conjugated to high throughput screening as a tool to generate new phenotypic diversity in wine yeast
<p><strong>The current global changes, societal and climatic, strongly challenge the wine industry. Multiple methods are applied in the development of new strains for the industry, but many are based on the existing phenotypic and genetic diversities. UV mutagenesis, as an untargeted strategy, has been successfully used for years, with significant examples on wine. Here we developed and validated a UV-mutant generation strategy coupled with a high throughput screening in wine-like conditions. This strategy led to the production of a 502 mutant’s library for which concentrations of eight primary metabolites after fermentation were assessed. This data paper presents the resulting data.</strong></p>
Supporting data for: "Hybrid Computational-Experimental Data-Driven Design of Self-Assembling π-Conjugated Peptides"
<p>This repository contains supporting data and code for the paper titled "Hybrid Computational-Experimental Data-Driven Design of Self-Assembling π-Conjugated Peptides" by Kirill Shmilovich, Sayak Subhra Panda, Anna Stouffer, John D. Tovar, and Andrew L. Ferguson.</p>
Colloidal network oleogels structured by sonothermal conjugates of sodium caseinate and anionic gums
<p>The raw data of Maillard conjugates, Maillard conjugate-stabilized emulsions and oleogels.</p> <p>The optical microscopic images of Maillard conjugate-stabilized emulsions.</p> <p>Centrifugation and storage stability of emulsions.</p> <p> </p>
Supplementary data to publication "Abomasal infusion of essential fatty acids and conjugated linoleic acid during late pregnancy and early lactation affects immunohematological and oxidative stress markers in dairy cows"
<p>Supplementary data to publication "Abomasal infusion of essential fatty acids and conjugated linoleic acid during late pregnancy and early lactation affects immunohematological and oxidative stress markers in dairy cows" in Journal of Dairy Science; DOI: <a href="https://doi.org/10.3168/jds.2022-22514">https://doi.org/10.3168/jds.2022-22514</a></p>
DataSet for "Hybrid Based on Phenazine Conjugated Microporous Polymer as a High-Performance Organic Electrode in Aqueous Electrolytes"
<p>All raw data were obtained directly by the instruments and were then elaborated by us using Origin and/or Excel. All the facilities used, except for the NMR measurements, are present in IMDEA Energy Institute <br> <br> </p>
Combining Solid-State NMR with Structural and Biophysical Techniques to Design Challenging Protein-Drug Conjugates
<p>Solid-state NMR spectra (DARR and NCA) of rehydrated freeze-dried free TTR and TTR in the presence of Tafamidis and Taf-PTX</p> <p>Reference citation: Combining Solid-State NMR with Structural and Biophysical Techniques to Design Challenging Protein-Drug Conjugates. Angew Chem Int Ed Engl. 2023 Jun 5:e202303202. doi: 10.1002/anie.202303202. PMID: 37276329.</p>
Immunogenicity and Safety Study of a Quadrivalent Meningococcal Conjugate Vaccine Administered Concomitantly With Routine Pediatric Vaccines in Healthy Infants and Toddlers
ClinicalTrials.gov study NCT03691610. IPD Sharing: YES. Countries: 2. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.