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135 results for “consensus tree”
Fig. 1. Bayesian majority rule consensus tree reconstructed for 90 in Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia
Fig. 1. Bayesian majority rule consensus tree reconstructed for 90 taxa using five genes (ArgK, CAD, LWRh, Top1, Wg) in a MrBayes analysis. Above node numbers indicate posterior probability. Data were partitioned by PartitionFinder v.1.1.1 and analyzed using a best fit model for each gene and codon position, with 10 million generations and a burn-in of 25 %. Area enclosed by dashed lines is enlarged on Fig. 2.
Figure 3. Consensus tree for the cytochrome b in Four New Bat Species (Rhinolophus hildebrandtii Complex) Reflect Plio-Pleistocene Divergence of Dwarfs and Giants across an Afromontane Archipelago
Figure 3. Consensus tree for the cytochrome b dataset for representative genotyped specimens of the Rhinolophus hildebrandtii complex. The topology represents the consensus topology from a 20 million MCMC run implemented in BEAST. Estimates of divergence times (million years ago; Mya) are indicated adjacent to nodes or above branches and grey bars indicate 95% HPD values. The split between the Hipposideridae and Rhinolophidae was used as the calibration point. Taxa names include museum/field numbers which correspond to Appendix S1 or GenBank accession numbers and abbreviations are: RcfH - R. cf. hildebrandtiiı RD - R. darlingiı RE - R. eloquensı RF - R. fumigatusı RH - R. hildebrandtii s.l.ı RL - R. landeri and RR - R. ruwenzorii. Localitiesı where availableı are providedı abbreviations include SA - South Africaı MZ - Mozambiqueı and ZW - Zimbabweı and the numbers in parentheses correspond with place names in Table S1 and Fig. 2 for Clade 1 and 2 individuals. doi:10.1371/journal.pone.0041744.g003
FIG. 5. — Strict consensus tree from eight most parsimonious trees recovered for Molossus E. Geoffroy, 1805 in Diversity, morphological phylogeny, and distribution of bats of the genus Molossus E. Geoffroy, 1805 (Chiroptera, Molossidae) in Brazil
FIG. 5. — Strict consensus tree from eight most parsimonious trees recovered for Molossus E. Geoffroy, 1805. Numbers above the branches indicate Bootstrap values and bottom numbers indicate Bremer support values.
Fig. 2. Bayesian consensus tree generated from partial 28S in Relationships Of The Heteronchocleidids (Heteronchocleidus, Eutrianchoratus And Trianchoratus) As Inferred From Ribosomal Dna Nucleotide Sequence Data
Fig. 2. Bayesian consensus tree generated from partial 28S rDNA sequences (D1 domain) with Diplectanum spp. and Gyrodactylus spp. as outgroups. Values shown at each node refer to Bayesian (BI) posterior probabilities/maximum likelihood (ML) percentages of the bootstrap values with 100 replicates. Bootstrap values lower than 50 are given as dashes (-).
Fig. 51. Consensus tree for 13 in Polybia, Paraphyly, and Polistine Phylogeny
Fig. 51. Consensus tree for 13 cladograms resulting from simultaneous analysis of the combined character data in tables 1–3.
Fig. 50. Consensus tree for 79 in Polybia, Paraphyly, and Polistine Phylogeny
Fig. 50. Consensus tree for 79 strictly supported cladograms resulting from analysis of the larval character matrix in table 2, excluding the three terminals that have all missing values.
FIGURE 3 Majority-rule consensus tree from a in Evolutionary history of species of the fireFly subgenus Hotaria (Coleoptera, Lampyridae, Luciolinae, Luciola) inferred from DNA barcoding data
FIGURE 3 Majority-rule consensus tree from a Bayesian analysis (BI) of 128 samples of 14 morphospecies based on COI barcode sequences. The numbers at each node indicate Downloadedposteriorfrom Brill. probabilities com 12. /12/ Weakly 2023 03 sup-:05:57PM ported nodes (posterior via probabilityOpen below Access. 0.95) Thisareis an shownopenin red. access article distributed under the terms of the CC-BY 4.0 License. https://creativecommons.org/licenses/by/4.0/
Fig. 2. The Bayesian consensus tree basedon 988 in Integrative approach to resolve the Calotes mystaceus Duméril & Bibron, 1837 species complex (Squamata: Agamidae)
Fig. 2. The Bayesian consensus tree basedon 988 bp of mitochondrial DNA (12S rRNA and COI) shows six distinctlineages within Calotes mystaceus. Node support in terms of Bayesian posterior probabilities is indicated by circles at nodes (nodes with a BPP ≥ 0.90 are white, BPP ≥ 0.95 are grey, BPP ≥ 0.99 are black, values <0.90 arenot marked). Outgroup (Calotes versicolor) notshown for clarity. Numbers in parentheses behind taxa refer to localities mapped in Fig. 1.
Fig. 1. Strict consensus tree resulting from equal weighting analysis. Jackknife values over 51 in Pseudocetherinae (Hemiptera: Reduviidae) revisited: phylogeny and taxonomy of the lobe-headed bugs
Fig. 1. Strict consensus tree resulting from equal weighting analysis. Jackknife values over 51 are reported for tree one of eight.
Fig. 3. Consensus maximum likelihood tree for combined 16S in Cryptic multicolored lizards in the Polychrus marmoratus Group (Squamata: Sauria: Polychrotidae) and the status of Leiolepis auduboni Hallowell
Fig. 3. Consensus maximum likelihood tree for combined 16S and COI sequence data from seventeen Polychrus tissue samples (1,035 bp total). Bootstrap support values are indicated at each node, if greater than 50%. Samples are indicated by their museum accession number and country of origin, if known. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. For details of analysis, see text.
Fig. 21. Simplified strict consensus trees resulting from a in Taxonomic and stratigraphic update of the material historically attributed to Megalosaurus from Portugal
Fig. 21. Simplified strict consensus trees resulting from a cladistic analysis performed on a dentition-based data matrix and forcing the constrains defined by Hendrickx et al. (2020a) pruning a priori all morphotypes from the Lusitanian Basin but Morphotype 2 (A), simplified strict consensus tree resulting from the analysis pruning a priori all morphotypes from the Lusitanian Basin but MG 15 (B), and simplified strict consensus tree resulting from the analysis pruning a priori all morphotypes from the Lusitanian Basin but Morphotype 3 (C).
Fig. 18. Strict consensus trees resulting from a in Taxonomic and stratigraphic update of the material historically attributed to Megalosaurus from Portugal
Fig. 18. Strict consensus trees resulting from a cladistic analysis performed on a dentition-based data matrix and forcing the constrains defined by Hendrickx et al. (2020a) with the five tooth morphotypes from the Lusitanian Basin (A), simplified strict consensus tree resulting from the cladistic analysis pruning a priori all morphotypes from the Lusitanian Basin but Morphotype 1 (B), and simplified strict consensus tree resulting from the analysis pruning a priori all morphotypes from the Lusitanian Basin but MNHN/UL.EPt.023 (C).
Fig. 2. Consensus trees for the Cyathaspididae. A in A phylogenetic analysis of the heterostracan jawless vertebrate family Cyathaspididae
Fig. 2. Consensus trees for the Cyathaspididae. A, after Lundgren and Blom (2013); B, after Randle and Sansom (2017); C, after Denison (1964). Taxa not used in the analysis in this paper are denoted by an asterisk (*).
Fig. 3. Majority with bootstrap support consensus trees for 12S in MITOCHONDRIAL 16S AND 12S rRNA SEQUENCE ANALYSIS IN FOUR SALMONID SPECIES FROM ROMANIA
Fig. 3. Majority with bootstrap support consensus trees for 12S rRNA. (a) 12S rRNA Maximum Parsimony tree; (b) 12S rRNA Neighbor Joining tree, distance model Kimura 2 Parameters, transi-
Fig. 2. Majority with bootstrap support consensus trees for 16S in MITOCHONDRIAL 16S AND 12S rRNA SEQUENCE ANALYSIS IN FOUR SALMONID SPECIES FROM ROMANIA
Fig. 2. Majority with bootstrap support consensus trees for 16S rRNA. (a) 16S rRNA Neighbor Joining tree, distance model Kimura 2 Parameters, transition/transversion ratio 2.3; (b) 16S rRNA Maximum Parsimony tree; (c) 16S rRNA Maximum Likelihood tree
Fig. 6. Strict consensus tree resulting from 20 in A new species of Afrolaophonte (Copepoda, Harpacticoida, Laophontidae) from Korea and cladistic tests of species-groups
Fig. 6. Strict consensus tree resulting from 20 equally parsimonious trees from an analysis of 15 weighted morphological characters (Table 1) for 13 species of Afrolaophonte Chappuis, 1960 and one outgroup, Arenolaophonte stygia Lang, 1965. Characters 0, 2-4, and 11-14 were down-weighted to 0.5, while others were left at the default weight of 1. Full circles represent presumed synapomorphies, empty circles presumed plesiomorphies or homoplasies, Arabic numerals above circles characters, and Arabic numerals below circles character states.
Figure 3. Neighbor-joining consensus tree for 23 in Morphology and phylogeny of the sea anemone Stichodactyla haddoni (Cnidaria: Anthozoa: Actiniaria) from Chabahar Bay, Iran
Figure 3. Neighbor-joining consensus tree for 23 species, including Iranian sea anemone species (CHIAS1 and CHIAS2), based on 18S rDNA sequences. Cl1: Stichodactylidae; Cl2: Actiniidae; Cl3: Hormathiidae; Cl4: Aiptasiidae; Cl5: Actinostolidae. The numbers beside the branches are bootstrap values with 1000 replications. Bootstrap supports under 50% are not shown in this analysis.
Fig. 9. Strict consensus tree from phylogenetic analysis under extended implied weighting with 21 in New postcranial remains of large toxodontian notoungulates from the late Oligocene of Mendoza, Argentina and their systematic implications
Fig. 9. Strict consensus tree from phylogenetic analysis under extended implied weighting with 21 different values of k.
Fig. 8. Consensus trees from phylogenetic analyses under equal weights. A. Strict consensus tree. B. Reduced consensus tree. a in New postcranial remains of large toxodontian notoungulates from the late Oligocene of Mendoza, Argentina and their systematic implications
Fig. 8. Consensus trees from phylogenetic analyses under equal weights. A. Strict consensus tree. B. Reduced consensus tree. a, Martinmiguelia fernandezi; b, Taubatherium paulacoutoi; c, Ancylocoelus frequens; d, Huilatherium pluriplicatum; e, Asmodeus petrasnerus; f, Colpodon antucoensis + C. propinquus.
Fig. 4. A. Strict consensus tree produced from 85 in A re-evaluation of the enigmatic dinosauriform Caseosaurus crosbyensis from the Late Triassic of Texas, USA and its implications for early dinosaur evolution
Fig. 4. A. Strict consensus tree produced from 85 MPTs, each of length 1764 steps. B. Reduced strict consensus tree produced from 91 MPTs, each of length 1764, following the removal of the possible chimera Agnosphitys cromhallenesis. For Bremer support values calculated in this analysis for each of the major nodes, see Table 1. Studied specimens in bold.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.