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Supplementary material 1 from: Pontoppidan M, Nachman G (2013) Changes in behavioural responses to infrastructure affect local and regional connectivity – a simulation study on pond breeding amphibians. Nature Conservation 5: 13-28. https://doi.org/10.3897/natureconservation.5.4611

Full model description following the ODD-template suggested by Grimm et al. (2006, 2010) and model parameterisation. (doi: 10.3897/natureconservation.5.4611.app). File format: Adobe PDF document (pdf).:

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Figure 1 in Conservation of a new breeding population of Caucasian lynx (Lynx lynx dinniki) in eastern Turkey

Figure 1. IUCN distribution of Eurasian lynx (Lynx lynx) in Turkey shaded in black with the SarıkamışAllahuekber Mountains National Park represented with a white star (Breitenmoser et al., 2008). KuzeyDoğa's work focuses on the national park and surrounding areas, where we have documented a breeding population of lynx.

Fig. 3 in Captive breeding program for Scinax alcatraz (Anura: Hylidae): introducing amphibian ex situ conservation in Brazil

Fig. 3. Breeding of Scinax alcatraz at São Paulo Zoo. a) A pair in amplexus. b) Eggs deposited in the water. c) Maintanance of tadpoles in plastic pots with filtered water. d) Post-metamorph individuals (SVL x=12.49 mm). Photos by Cybele Lisboa.

Fig. 6 in Captive breeding program for Scinax alcatraz (Anura: Hylidae): introducing amphibian ex situ conservation in Brazil

Fig. 6. Range of environmental conditions (relative humidity and air temperature) most favorable for reproduction of Scinax alcatraz in captivity.

Fig. 5 in Captive breeding program for Scinax alcatraz (Anura: Hylidae): introducing amphibian ex situ conservation in Brazil

Fig. 5. Correlation between breeding events of Scinax alcatraz and environmental conditions (a) relative humidity and (b) air temperature from August 2013 to December 2017. Pearson product-moment Correlation Coefficient: r = 0.323; p <0.001; N = 732.

Fig. 2 in Captive breeding program for Scinax alcatraz (Anura: Hylidae): introducing amphibian ex situ conservation in Brazil

Fig. 2. Laboratory colony of Scinax alcatraz at Sao Paulo Zoo. a) Aquariums for maintanance of juveniles and adults. b) Plastic cups with filtered water and submerged plants for refuge. Photos by Cybele Lisboa.

Fig. 7 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 7. Nesting phenology of Ornate Hawk-Eagle (nest C). Chronological sequence from upper left to bottom right: nest with an egg (27 Sep 2008); egg; (27 Sep 2008); nestling – few days old (08 Nov 2008); adult on nest (16 Nov 2008); nestling about 10 days old (19 Nov 2008); nestling about 20 days old (28 Nov 2008); nestling about 40 days old (Dec 2008); Fledging (Apr 2009); Nest without chamber or traces of use (Apr 2009).

Fig. 6 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 6. Nest of an Ornate Hawk-Eagle located 31 m in an Araucaria tree (DBH = 132 cm). Lateral view (upper right) and view from above (bottom right) with details of the chamber (with green leaves and sticks).

Fig. 4 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 4. Nest of an Ornate Hawk-Eagle built 20 m in a Myrtaceae tree (DBH = 78.94 cm) (red circle). Lateral view (upper right) and view from above (bottom right) of the nest.

Fig. 2 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 2. Extent of occurrence of the Ornate Hawk-Eagle in the southern Atlantic Forest, Brazil based on historical (before 2000s; red triangles and red dashed line) and current records (after 2000s; black dots and line). Atlantic Forest remnants are showed in light green.

Fig. 1 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 1. Extent of occurrence of the Black-and-white Hawk-Eagle in the southern Atlantic Forest, Brazil based on historical (before 2000s; red triangles and red dashed line) and current records (after 2000s; black dots and line). Atlantic Forest remnants are showed in light green.

Fig. 3 in Breeding biology and conservation of hawk-eagles (Spizaetus spp.) Aves, Accipitridae) in southern Atlantic Forest, Brazil

Fig. 3. Extent of occurrence of the Black Hawk-Eagle in the southern Atlantic Forest, Brazil based on historical (before 2000s; red triangles and red dashed line) and current records (after 2000s; black dots and line). Atlantic Forest remnants are showed in light green.

Figure 6 in Zoo-based amphibian research and conservation breeding programs

Figure 6. Visitor experience. An interactive educational amphibian exhibit at St. Petersburg Zoo, Russian Federation, not only informs, but also provides tactility to increase fun and experience retention. Image by Mikhail Bagaturov.

Figure 5 in Zoo-based amphibian research and conservation breeding programs

Figure 5. Fea's tree frog (Rhacophorus feae) from SE Asia, possibly the largest species of tree frog in the world. Found in high montane forests and recently captive bred for the first time at Leningrad Zoo. Image by Mikhail F. Bagaturov.

Figure 3. Hellbender sperm sampling. A in Zoo-based amphibian research and conservation breeding programs

Figure 3. Hellbender sperm sampling. A team led by Dale McGinnity, Nashville Zoo at Grassmere, Tennessee, USA, is creating the first genetically representative gene bank for any amphibian put forth using the hellbender (C. alleganiensis). Image by Sally Nofs.

Figure 2 in Zoo-based amphibian research and conservation breeding programs

Figure 2. Neurergus kaiseri. In a pioneering program, Sedg- wick County Zoo, Kansas, USA, is breeding for sale the critically endangered Loristan newt (Neurergus kaiseri) to support field work and conservation in Iran and to increase stocks with private breeders. Image by Nate Nelson.

Figure 4 in Zoo-based amphibian research and conservation breeding programs

Figure 4. Trachycephalus nigromaculatus. The black-spotted casque-headed treefrog (Trachycephalus nigromaculatus) is an excellent display species because it is large (10 cm), spectacu- lar, and sits in the open. These frogs are very popular pets in the Russian Federation. Image by Mikhail Bagaturov.

Figure 1 in Zoo-based amphibian research and conservation breeding programs

Figure 1. Research in zoos, such as this study on tadpole growth and development at Antwerp Zoo, can make substan- tial contributions to conservation breeding programs. Image by Robert Browne.

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Figure 8 in Is there a chance for conservation breeding? Ex situ management, reproduction, and early life stages of the Harlequin toad Atelopus flavescens Duméril & Bibron, 1841 (Amphibia: Anura: Bufonidae)

Figure 8. Individual recognition of a male Atelopus flavescens based on color pattern, but note the change in color (photographs taken 12 July 2009 and 31 July 2011, respectively). Photographs by D. Karbe.