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2 results for “cyberinfrastructure”
COLLABORATIVE RESEARCH: Cyberinfrastructure for a Virtual Observatory and Ecological Informatics System (VOEIS)
<p>Internally logging temperature sensor (HOBO Water Temp Pro v2) tethered to a buoy at 5 m fixed depth from 2011 to 2014. Buoy located in Flathead Lake, Montana, USA, at the sampling location termed 'Midlake Deep' (-114.0663, 47.8631).</p> <p>Data presented in: Evans, K. A., L. M. Peoples, J. R. Ranieri, E. K. Wear, and M. J. Church. 2023. Mixing-driven changes in distributions and abundances of planktonic microorganisms in Flathead Lake.</p>
Figure 1 from: Moore W (2011) Biology needs cyberinfrastructure to facilitate specimen-level data acquisition for insects and other hyperdiverse groups. ZooKeys 147: 479-486. https://doi.org/10.3897/zookeys.147.1944
Figure 1 - Schematic of integration of components. The blue funnel (on left) depicts web portals and cyberinfrastructure that allows for a diversified contributor pool and speeds the pace of acquiring validated specimen-level data. The data review process provides a peer-review filter to incoming data that helps to ensure data quality. The red column (center) depicts a specimen-level database that stores entries accepted by the editors. This specimen-level database could be directly linked to large-scale initiatives such as GBIF, NBII, National Digital Biological Collections Resource, the Encyclopedia of Life and the Tree of Life, GenBank and MorphBank. The green funnel (on right) represents taxon-specific tools that could be developed utilizing such a rich data set
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.