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606 results for “data exploration”
Data set for the journal article ''Nanoscale chemical reaction exploration with a quantum magnifying glass''
<div>This data set includes the raw data of the esterification and hydrogenation discussed in the journal article alongside with the Scine Puffin Singularity container, steering protocol files, Swoose parameters, (pre-)releases of the software, and Python scripts for individual steps without the graphical user interface to reproduce the data.</div>
Exploring AdaBoost and Random Forests machine learning approaches for infrared pathology on unbalanced data sets
<p>The use of infrared spectroscopy to augment decision-making in histopathology is a promising direction for the diagnosis of many disease types. Hyperspectral images of healthy and diseased tissue, generated by infrared spectroscopy, are used to build chemometric models that can provide objective metrics of disease state. It is important to build robust and stable models to provide confidence to the end user. The data used to develop such models can have a variety of characteristics which can pose problems to many model-building approaches. Here we have compared the performance of two machine learning algorithms – AdaBoost and Random Forests – on a variety of non-uniform data sets. Using samples of breast cancer tissue, we devised a range of training data capable of describing the problem space. Models were constructed from these training sets and their characteristics compared. In terms of separating infrared spectra of cancerous epithelium tissue from normal-associated tissue on the tissue microarray, both AdaBoost and Random Forests algorithms were shown to give excellent classification performance (over 95% accuracy) in this study. AdaBoost models were more robust when datasets with large imbalance were provided. The outcomes of this work are a measure of classification accuracy as a function of training data available, and a clear recommendation for choice of machine learning approach.</p>
Data From: Exploring Gelatin-A and Mouse Proline-Rich Protein 5 as Probes for Wine Polyphenols analysis by Quartz Crystal Microbalance with Dissipation Monitoring
<p>Polyphenols are essential in winemaking, affecting the wine's quality, color, astringency, bitterness, and chemical stability. Conventional methods for assessing polyphenolic content are both expensive and time-intensive, underscoring the need for new, efficient techniques.</p> <p>The Quartz Crystal Microbalance with Dissipation Monitoring (QCM-D) sensor is recognized for its speed and reliability as a label-free detection tool. This study applies QCM-D to evaluate Gelatin Type A (Gel-A) from porcine skin and Mouse Proline-Rich Protein 5 (MP5) for polyphenol analysis in red wines without pre-treatment. MP5 notably exhibited a linear dissipation signal response with both total polyphenol and hydroxybenzoic acid concentrations. These findings highlight the potential for creating a stand-alone sensor platform for real-time polyphenol monitoring in winemaking.</p>
Data for a publication "Exploring the microstructure, mechanical properties, and corrosion resistance of innovative bioabsorbable Zn-Mg-(Si) alloys fabricated via powder metallurgy techniques"
<p><span><span>These data are published as part of the paper: “</span><span>Exploring the microst</span><span>ructure, mechanical properties, </span><span>and corrosion resistance of innovative bioabsorbable Zn-Mg-(S</span><span>i) alloys fabricated via powder </span><span>metallurgy techniques</span><span>” published in journal: “</span><span>Journal of Materials Research and Technology</span><span>”.</span></span><span> </span></p>
Supplementary Data for Wueller et al. (2024): Geologic History of the Amundsen Crater Region Near the Lunar South Pole: Basis for Future Exploration
<p>Supplementary Data for Wueller et al. (2024): Geologic History of the Amundsen Crater Region Near the Lunar South Pole: Basis for Future Exploration</p> <p>Data contains the georeferenced map plate of our geologic map that can be used in any geoinformation system (GIS).</p> <p><strong>If you use these data, please cite BOTH the Planetary Science Journal publication and the Zenodo dataset.</strong></p> <p>Wueller, L., Iqbal, W., Frueh, T., van der Bogert, C. H., & Hiesinger, H. (2024). Geologic history of the Amundsen crater region near the Lunar South Pole: Basis for future exploration. <em>The Planetary Science Journal</em>, <em>5</em>(6), 147. <a href="https://iopscience.iop.org/article/10.3847/PSJ/ad2c04">https://iopscience.iop.org/article/10.3847/PSJ/ad2c04</a></p> <p>Wueller, L., Iqbal, W., Frueh, T., van der Bogert, C. H., & Hiesinger, H. (2024). Supplementary Data for Wueller et al. (2024): Geologic history of the Amundsen crater region near the Lunar South Pole: Basis for future exploration. <em>Zenodo Dataset</em>. <a href="https://doi.org/10.5281/zenodo.10693820" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.10693820</a></p> <p>-----------------------------------------------------------------------------------------------------------------------------------------</p> <p>Mapping Scale is 1:100,000</p> <p>Print Scale is 1:1,000,000</p> <p>-----------------------------------------------------------------------------------------------------------------------------------------</p> <p>For further questions contact lwueller@uni-muenster.de</p> <p>Lukas Wueller, Institut für Planetologie, Universität Münster, Germany, June 2024</p>
Climate Solutions Explorer - hazard, impacts and exposure data
<p><a name="_GoBack"></a>The Climate Solutions Explorer website maps and presents information about mitigation pathways, avoided climate impacts, vulnerabilities and risks arising from development and climate change. <a href="https://www.climate-solutions-explorer.eu"><strong>www.climate-solutions-explorer.eu</strong></a></p> <p>Using the latest data, state-of-the-art models were used to assess the future trends of indicators of development- and climate-induced challenges.</p> <p>Updated gridded global climate and impact model data are based on CMIP6 and CMIP5 projections, using a subset of models from the ISIMIP project that have been consistently downscaled and bias-corrected. The data includes various indicators (~42) relating to extremes of precipitation and temperature (e.g. from Expert Team on Climate Change Detection and Indices), hydrological variables including runoff and discharge, heat stress (from wet bulb temperature) events (multiple statistics and durations), and cooling degree days, as well as further indicators relating to air pollution (PM2.5 from the GAINs model), and crop yields and natural habitat land-use change (biodiversity pressure) from the GLOBIOM model.</p> <p>Indicators were calculated at a spatial resolution of 0.5° (approximately 50km at the equator), and subsequently spatially aggregated to the country level – from which population and land area exposure to the impacts were calculated. This has enabled the country-by-country comparison of national climate impacts and avoided exposure. Impacts were calculated at global mean temperature intervals, i.e. 1.2, 1.5, 2, 2.5, 3, and 3.5 °C, compared to a pre-industrial climate.<br><br></p> <p><strong>The dataset includes: </strong></p> <ul> <li>Global gridded projections (in netCDF format) of all the climate impact indicators at 0.5° spatial resolution, at global warming levels of 1.2, 1.5, 2, 2.5, 3, and 3.5 °C<br><br>For each GWL, maps for the absolute indicator values, the relative difference, and the scores are provided. The naming format is: cse_[short_indicator_name]_[ssp]_[gwl]_[metric].nc4. Please note that the Greenland ice sheet and the desert areas have been masked out for the hydrology indicators for these datasets.<br><br></li> <li>Intermediate output data, including gridded maps of absolute values, relative differences, and scores for all ensemble members, as well as gridded maps of the multi-model ensemble statistics for the global warming levels and the reference period <br><br>For the ensemble member data, the naming format is [gcm]_[ssp/rcp]_[gwl]_[short_indicator_name]_global_[start_year]_[end_year].nc4 or [ghm]_[gcm]_[ssp/rcp]_[gwl]_[soc]_[short_indicator_name]_global_[start_year]_[end_year]_[metric].nc4 for the hydrology indicators. <br><br></li> <li>Tabular data (.csv) aggregating the indicators to country (or region) level, for both hazards and exposure, population and land-area weighted<br><br>The .zip archives ‘table_output_climate_exposure_{aggregation_level}.zip’ contain the tabular data for all indicators. Four different aggregation levels are provided: country level, R10 regions and the EU, IPCC AR6-WGI reference regions, and UN R5 regions. A separate file named ‘table_output_climate_exposure_land_air_pollution.zip’ contains the table data for theland and air pollution indicators. <br><br></li> <li>Tabular data (.csv) for avoided impacts by mitigating to 1.5 °C (land and population exposure)<br><br>The .zip archives ‘table_output_avoided_impacts_{aggregation_level}.zip’ contain the tabular data for all indicators. Four different aggregation levels are provided: country level, R10 regions and the EU, IPCC AR6-WGI reference regions, and UN R5 regions. A separate file named ‘table_output_avoided_impacts_land_air_pollution.zip’ contains the table data for the land and air pollution indicators.</li> </ul> <p> </p> <p>Further details are available on the Data Story page – <a href="http://www.climate-solutions-explorer.eu/story/data">www.climate-solutions-explorer.eu/story/data</a>. A detailed description of the methodology and the calculation of the ISIMIP-derived indicators has been published in <a title="Global warming levels indicators of climate change and hotspots of exposure" href="https://doi.org/10.1088/2752-5295/ad8300" target="_blank" rel="noopener">Werning, M. et al. (2024).</a></p> <p> </p> <p><strong>Release notes (v1.1)</strong></p> <p>Changes in this version:</p> <ul> <li>Only table output data for the land and air pollution indicators have been changed, all other indicator data remain unchanged from v1.0</li> <li>Updated land and air pollution indicators to use scaled population data to match the latest SSP population projections from the Wittgenstein Center from 2023</li> <li>Fixed issue with the region mask for the EU</li> <li>Added table output data for the IPCC AR6-WGI reference regions and the UN R5 regions</li> </ul> <p> </p> <p><strong>Release notes (v1.0)</strong></p> <p>Changes in this version:</p> <ul> <li>Fixed calculation of the indicator “Drought intensity” (both for the version using discharge and run-off)</li> <li>Masked out the Greenland ice sheet and the desert areas for the global gridded projections for the hydrology indicators in the final output files</li> <li>Added table output data for the IPCC AR6-WGI reference regions and the UN R5 regions</li> <li>Used scaled population data to match the latest SSP population projections from the Wittgenstein Center from <a>2023</a></li> <li>Added the indicator ‘Heatwave days’</li> <li>Added intermediate outputs for all ensemble members for energy, hydrology, precipitation, and temperature indicators<br><br></li> </ul> <p><strong>Release Notes (v0.4)</strong></p> <p>Changes in this version:</p> <ul> <li>Removed ssp and metric from variable name in netCDF files</li> <li>Removed obsolete coordinates in netCDF files for 'Drought intensity'</li> <li>Added intermediate outputs for energy, hydrology, precipitation, and temperature indicators</li> </ul> <div> </div>
Model simulation data used in "Exploring the uncertainties in the aviation soot-cirrus effect" (Righi et al., Atmos. Chem. Phys., 2021)
<p>This dataset contains the output of the EMAC global model simulations analysed and discussed in Righi et al. (<i>Atmos. Chem. Phys.</i>, 2021). For details see the README.md file and Table 1 in the paper.</p>
Replication data for: 'A First-Order Statistical Exploration of the Mathematical Limits of Micromagnetic Tomography'
<p>This repository contains the random data generated for obtaining results described in "A first-order statistical exploration of the mathematical limits of Micromagnetic Tomography". All tested parameters are systematically divided over different folders and subfolders. This dataset contains only .npy files, generated with python version 3.8.8 and numpy version 1.21.5.</p> <p>Each file can be opened with numpy.load(filename)</p> <p>The resulting figures are constructed with data of at least 15 iterations; each iteration is stored in a separate folder 'test_' followed by the iteration number.</p> <p>The README file inside provides a detailled overview of the files included.</p>
Github commit data for the article "Beyond Zipf's law: Exploring the discrete generalized beta distribution in open-source repositories"
<p><span>This dataframe corresponds to the data used in the Nowak's et al. 2024 article "Beyond Zipf’s law: Exploring the discrete generalized beta distribution in open-source repositories" (see reference below).</span></p> <p><span>It consists of the distirbutions of number of commits per user across a number of GitHub repositories. <br><br>There are three columns:</span></p> <ul> <li><span>repository: the repository name</span></li> <li><span># of commits: the number of commits of a given individual</span></li> <li><span>rank: the user rank in the repository (by decreasing number of commits)<br><br></span></li> </ul> <p><strong><span>Reference:</span></strong></p> <p><span>Nowak, P., Santolini, M., Singh, C., Siudem, G., & Tupikina, L. (2024). Beyond Zipf’s law: Exploring the discrete generalized beta distribution in open-source repositories. <em>Physica A: Statistical Mechanics and Its Applications</em>, <em>649</em>, 129927. <a href="https://doi.org/10.1016/j.physa.2024.129927">https://doi.org/10.1016/j.physa.2024.129927</a></span></p>
PWAS Hub: exploring gene-based associations of complex diseases with sex dependency - backing data
<p>The contents of the PWAS database is presented on <a title="The PWAS hub" href="https://pwas.huji.ac.il/?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il</a>. The frontend and backend were build on top of a dynamical databse system. Please consult the direct API for PWAS if you wish to query the database directly: <a title="The PWAS API" href="https://pwas.huji.ac.il/API?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il/API</a></p> <p>This is a PostgreSQL dump file that was created using <code>pg_dump</code>, the backup/restore procedure for PostgreSQL. To restore this into PostgreSQL do</p> <p>[a] create a database</p> <p><code>createdb DATABASE</code></p> <p>[b] on the terminal run</p> <p><code>pg_restore -vcC -h HOST -p PORT -d DATABASE < pwas_dump.20220628.psql</code></p> <p>The HOST and PORT are determined by your installation and DATABASE is given by you in step [a] abobe.</p> <p> </p> <p>To access the PWAS tables, look for table names that begin with <code>pwasAPI_</code></p> <p>A possible query to the database may look like this:</p> <p><code>SELECT * FROM "pwasAPI_genediseasestatpwas" WHERE uniprot_id = 'P09914' AND disease = 'C44';</code></p> <p>This query lists the data that associate uniprot id <strong>P09914</strong> (gene symbol IFIT1) and disease ICD-10 <strong>C44</strong> (Other malignant neoplasms of skin)</p>
Multi-Dimensional Data Viewer (MDV) user manual for data exploration: "Systematic analysis of YFP traps reveals common discordance between mRNA and protein across the nervous system"
<table> <tbody> <tr> <td> <p> Please also see the latest version of the repository:<br> <a href="https://doi.org/10.5281/zenodo.6374011">https://doi.org/10.5281/zenodo.6374011</a> and<br> our website: <a href="https://ilandavis.com/jcb2023-yfp">https://ilandavis.com/jcb2023-yfp</a></p> </td> </tr> </tbody> </table> <p> </p> <p>The explosion in the volume of biological imaging data challenges the available technologies for data interrogation and its intersection with related published bioinformatics data sets. Moreover, intersection of highly rich and complex datasets from different sources provided as flat csv files requires advanced informatics skills, which is time consuming and not accessible to all. Here, we provide a “user manual” to our new paradigm for systematically filtering and analysing a dataset with more than 1300 microscopy data figures using Multi-Dimensional Viewer (MDV) -<a href="https://mdv.molbiol.ox.ac.uk/projects/mdv_project/7012?view=RNA+%2F+Protein+Distribution">link</a>, a solution for interactive multimodal data visualisation and exploration. The primary data we use are derived from our published systematic analysis of 200 YFP traps reveals common discordance between mRNA and protein across the nervous system (<a href="https://doi.org/10.1083/jcb.202205129">eprint link</a>). This manual provides the raw image data together with the expert annotations of the mRNA and protein distribution as well as associated bioinformatics data. We provide an explanation, with specific examples, of how to use MDV to make the multiple data types interoperable and explore them together. We also provide the open-source python code <a href="https://github.com/ilandavislab/Annotate.OMERO.Fig">(github link)</a> used to annotate the figures, which could be adapted to any other kind of data annotation task.</p>
Data to explore circular manureshed management in beef supply chains of the United States and western Canada
Circular management of beef supply chains holds great promise for improving sustainability from grazing agroecosystem to dinner plate. In the United States and Canada, one approach to circularity entails transporting manure nutrients from cattle produced in feedlots back to the grazing agroecosystems where they originated to enrich haylands for further grazing cattle production. We provide data to assess this strategy centered around three grazing agroecosystems: Florida, New Mexico, and the provincial assemblage of Manitoba, Saskatchewan, Alberta, British Columbia. We describe four datasets that can be used to estimate the potential nutrient utilization of hay fed to grazing cattle in the three grazing agroecosystems and the magnitudes of feedlot manure nutrients available for transport back to them. We found that although biogeography and management differ among the three grazing agroecosystems, the hay allocated for grazing cattle represented approximately 65% of the total harvested hay produced per agroecosystem after accounting for harvest losses, and that on average all three areas exported about 450,000 cattle annually for feedlot, pasture, and slaughter to states across the US. Although we highlight only three grazingland settings, our approach relies on methods that could ultimately be scaled nationally and internationally, with applicability to other animal industries for which circular management is an aspiration for sustainability outcomes.
Data to accompany "Exploring the Complexity of Ocean Acidification: An Ecosystem Comparison of Coastal pH Variability"
The goal of this project was to create a science lesson at the middle school level with data illustrating the variablilty of pH and temperature in nature. The lesson allows students to interpret pH data and gain knowledge of abiotic and biotic processes that contribute to pH differences between tropical, temperate and polar marine ecosystems. Students use what they have learned to interpret data from a 'mystery' site and develop a hypothesis as to which ecosystem the unknown data was collected from. The full cirriculum is described in Kapsenberg, L, AL Kelley, LA Francis, and SB Raskin (2015) Exploring the complexity of ocean acidification: an ecosystem comparison of coastal pH variability. Science Scope 39(3): 51-60. doi: 10.2505/4/ss15_039_03_51 This dataset contains an Excel workbook with five worksheets: A "Readme" tab with citations for additional reading and data attribution.Three time-series of pH and temperature from coastal locations: a temperate kelp forest in the Santa Barbara Channel (Spring season, 2 months, 20 min interval). a coral reef near the island of Moorea, Tahiti (Summer season, 3 weeks, 30 min interval), and the polar ocean of Cape Evans, McMurdo Bay, Antarctica (Spring/Summer, 6 months, bi-hourly interval). A fourth worksheet contains data for a "mystery site" for student examination. Data for the study were contributed by the Santa Barbara Coastal LTER, Moorea Coral Reef LTER and the G. Hofmann lab (University of California, Santa Barbara). Additional pH data are available from both LTER sites. Antarctic data in this dataset are also available from NSF's Biological and Chemical Oceanographic Data Management Office (see Cape Evans Mooring, 2012).
figure data for "Radiation environment and doses on Mars at Oxia Planum and Mawrth Vallis: support for exploration at sites with biosignature preservation potential", by F. Da Pieve, G. Gronoff, J. Guo et al (2020)
<p>The data are the tabular format of the plots in figures 2-7 of the paper submitted.</p> <p> </p>
Exploring Data Evaluation Strategies for Enhanced Identification of Host Cell Proteins in Drug Products of Therapeutic Antibodies and Fc-Fusion Proteins
<p>This data repository contains all previously unpublished raw data files for the manuscript “Exploring Data Evaluation Strategies for Enhanced Identification of Host Cell Proteins in Drug Products of Therapeutic Antibodies and Fc-Fusion Proteins” by Wolfgang Esser-Skala, Marius Segl, Therese Wohlschlager, Veronika Reisinger, Johann Holzmann, and Christian G. Huber. See <em>readme.md</em> for further information.</p>
Raw data for PIP2 interaction with TRPC3, explored through computation and electrophysiology
<p>The transient receptor potential canonical type 3 (TRPC3) channel plays a pivotal role in regulating neuronal excitability within the brain via its constitutive activity. The channel is intricately regulated by lipids and has previously been demonstrated to be positively modulated by PIP2. Using molecular dynamics simulations and patch clamp techniques, we reveal that PIP2 predominantly interacts with TRPC3 at the L3 lipid binding site, located at the intersection of pre-S1 and S1 helices. We propose a novel signal transduction pathway from the L3 through the re-entrant loop to a salt bridge between the TRP helix and S4-S5 linker. Notably, we find that both stimulated and constitutive TRPC3 activity require PIP2. These structural insights into the function of TRPC3 are invaluable for understanding the role of the TRPC subfamily in health and disease in native tissue.</p>
Supporting Data for "Exploring ChatGPT-4 for Transforming Taxonomic Data into OWL: Lessons Learned and Implications for Ontology Development"
<p>Data from the trials with ChatGPT to generate OWL files for taxonomic data from the GBIF Backbone Taxonomy.</p> <p>Updates of version 2: additional prompts from the experiments with Gemini and DeepSeek.</p>
Data Set for the Journal Article "Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis"
<p>This dataset includes the XYZ structures of the centroids of all compounds found. Charge and multiplicity are given in the comment line of each XYZ file.</p>
TRPC3 interaction with cholesterol as explored through MD (raw data)
<p>Transient receptor potential canonical 3 (TRPC3) channel belongs to the superfamily of transient receptor potential (TRP) channels which mediate Ca<sup>2+</sup> influx into the cell. These channels constitute essential elements of cellular signalling. TRPC3 is primarily gated by lipids, and its surface expression has been shown to be dependent on cholesterol, yet a comprehensive exploration of its interaction with this lipid has thus far not emerged. Here, through 80 µs of coarse-grained molecular dynamics simulations, we show that cholesterol interacts with multiple elements of the transmembrane machinery of TRPC3. Through our approach, we identify an annular binding site for cholesterol on the pre-S1 helix, and a non-annular site at the interface between the voltage-sensor like domain and pore domains. Here cholesterol interacts with exposed polar residues, and possibly acts to stabilise the domain interface.</p> <p> </p> <p><br> p { margin-bottom: 0.08in; color: #000000; line-height: 0.24in; text-align: justify; orphans: 2; widows: 2; background: transparent }p.western { font-family: "Palatino Linotype", serif; font-size: 12pt }p.cjk { font-family: "Palatino Linotype", serif; font-size: 12pt; so-language: de-DE }p.ctl { font-family: "Palatino Linotype", serif }a:visited { color: #954f72; text-decoration: underline }a:link { color: #0000ff; text-decoration: underline }</p> <p> </p>
Dataset linking to the paper "Exploring characteristics of national forest inventories for integration with global space-based forest biomass data"
<p>The dataset links to the study titled “Exploring characteristics of national forest inventories for integration with global space-based forest biomass data”. This study is published in the journal “Science of the Total Environment” and the publication can be found at <a href="https://doi.org/10.1016/j.scitotenv.2022.157788">https://doi.org/10.1016/j.scitotenv.2022.157788</a>. The dataset contains four csv files that were used to produce the results and other figures in the paper. The description of the individual data files contained in the dataset is given below.</p> <p><strong>NFI availability and characteristics data: </strong>The data file “NFI_availability_characteristics.csv” contains data on the total number of NFIs, the NFI extent, and the year of the most recent NFI in countries with NFI as reported in FRA 2020 country reports. The respective data variables in the data file are termed as Number_of_NFI, Latest_NFI_extent_FRA2020, and Latest_NFI_year_FRA2020 (NFI years generally refer to the years of data collection). In addition, the data file contains data on the region and tropical domain per country. The tropical and subtropical countries were considered tropical in the analysis and interpretation of the results. These data were used to produce Figure 2 of the study. ArcMap 10.7.1 was used for this purpose. </p> <p><strong>National biomass intercomparison data: </strong>The data file “national_biomass_intercomparison.csv” contains national forest AGB data for the year 2018 from FRA 2020 and CCI Biomass product that were used in the national biomass intercomparison analysis. The total (tons) and average space-based AGB (tons/ha) are extracted directly from the CCI Biomass Map 2018 for each country included in the study. The processing is done in Python and R environments. The spatial resolution of the map is 100 m. The average FRA AGB data in tons per ha was compiled from FRA 2020 country reports. The total FRA AGB data (tons) was estimated by multiplying each country's average FRA AGB data with FRA forest area data (in ha).</p> <p>The data unit for total AGB was converted from tons to gigaton (Gt) in intercomparison analysis. The total CCI Map AGB estimates used in the analysis are termed as CCI_MAP_AGB_Gt in the data file and the average as CCI_Map_AGB_tons.ha. Similarly, the total FRA AGB data are termed as FRA_AGB_Gt and the average as FRA_AGB_ton.ha. The NFI availability and temporality were also used in intercomparison analysis and this data is termed as Latest_NFI_year_FRA2020 in the data file. The data were used to produce Figure 3 of the study in the R environment.</p> <p><strong>NFI plot design characteristics: </strong>The data file named “NFI_plot_design_characteristics.csv” contains data on variables that were used in the analysis of NFI plot designs in 46 tropical countries. This data file mainly contains the data that was used to produce Figure 4 and Figure 6 in the R environment. The value “uniform” in the sampling_stratification variable means no stratification was used in the sampling design. The variable name “psu” stands for primary sampling unit (both cluster and single plots), “psu_distance_km” for the distance between primary sampling units in km, “cluster_plotdis_m” for the distance between plots in meter in the cluster, “plotsize_ha” for plot (single and cluster plots ) size in ha, “plotshape” for plot shapes (single and cluster plots), “ILUA” for Integrated Land Use Assessment. The data were compiled from the latest NFI design manuals and NFI reports.</p> <p><strong>NFI years: </strong>The data file “NFI_years_tropical_countries_data.csv” contains data on NFI years of the latest NFI in 46 tropical countries that were used to produce Figure 1 using ArcMap 10.7.1. The years generally refer to the last years of data collection. Data were compiled from the latest country NFI design manual or NFI report. This included both ongoing and completed NFI.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.