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1,567 results for “decontamination”
Supplementary Data - Impacts of selective digestive decontamination on the pangenome composition of ESBL-E. coli
<p>Supplementary Data of:</p> <p><span>Impacts of selective digestive decontamination on the pangenome composition of ESBL<em>-E. coli</em></span></p>
A modified decontamination and storage method for sputum from patients with tuberculosis
<p>Sputum sampling is a cheap and non-invasive method for diagnosis Tuberculosis. A modified method is devised to enhance handling capacity and minimize risk of contamination in culture.</p> <p>"22_samples_TTP_GU_method_comparison_dataset.csv" is a dataset for comparing standard method and modified method of sputum handling and storing procedures before being cultured in MGIT. MGIT is used in BD BACTEC 960 MGIT system which generates "Time to positive" hours for a culture to growth and "Growth Unit" for estimating the amount of growth.</p> <p>"348_samples_TTP_GU_modified method_dataset.csv " is a dataset for applying modified method on selected 348 sputum samples for culture in MGIT. The dataset contains "Time to positive", "Growth Unit", "ZN smear grade", and "Duration of frozen:.</p>
Introduction to Ancient Metagenomics Textbook (Edition 2023): Authentication and Decontamination
<p>Data and conda software environment file for the chapter 'Authentication and Decontamination' of the SPAAM Community's textbook: Introduction to Ancient Metagenomics (https://www.spaam-community.org/intro-to-ancient-metagenomics-book).</p>
Figure 2 in Recreational watercraft decontamination: can current recommendations reduce aquatic invasive species spread?
Figure 2. Water temperature and exposure duration resulting in 100% mortality. The regression line shows the relationship between water temperature and exposure duration among all AIS types collectively. Dashed lines represent the 95% confidence bands.
Spatial datasets associated with decontamination and remediation operations following the Fukushima nuclear accident, Japan (2011–2023)
<p>At the onset of the full reopening in Spring 2023 of the Difficult-to-Return Zone of Northeastern Japan following the Fukushima Daiichi Nuclear Power Plant (FDNPP) accident that took place in March 2011, several spatial layers were regrouped and compiled to facilitate environmental studies dealing with the redistribution of radiocesium fallout across landscapes.</p> <p><strong>The current dataset is composed of 23 shapefiles including those of the delineations of different spatial zones (Intensive Contamination Survey Areas – ICAs, Special Decontamination Zones – SDZ, Difficult-to-Return Zone –</strong> <strong>DTRZ, and FNDPP location) (Evrard et al. 2019), municipalities where mushroom consumption restrictions were enforced (restricted and partially lifted restrictions), river hydrographic networks and their respective drainage areas (Mano, Niida, Ota, Takase, and Ukedo), dam reservoirs and drainage areas (Mano, Ogaki, Takanokura, and Yokokawa), multiple administrative delineations in Japan (whole Japan administrative boundaries, Prefectures, and municipalities) (GIS, 2016), and one raster file of the reconstruction of initial <sup>137</sup>Cs fallout across eastern Japan (from Kato et al., 2019).</strong></p> <p><strong>The current dataset provides a support to a publication submitted to the SOIL journal:<br></strong></p> <div> <div><strong>Evrard, O., Chalaux-Clergue, T., Chaboche, P.-A., Wakiyama, Y., and Thiry Y. (2023). Research and Management Challenges Following Soil and Landscape Decontamination at the Onset of the Reopening of the Difficult-To-Return Zone, Fukushima (Japan)’. <em>SOIL</em> 9: 479–97. <a href="https://doi.org/10.5194/soil-9-479-2023">https://doi.org/10.5194/soil-9-479-2023</a>. </strong></div> <div> </div> </div> <p>All map processing was carried out using QGIS 3.26.0 (QGIS, 2022) and under the EPSG:WGS 84 projection system.</p> <p>The <sup>137</sup>Cs fallout raster (in Bq m<sup>-2</sup>, decay-corrected to July 2011) was generated from the point grid of Kato et al. (2019). A total of 126 tiles (0.25 x 0.25 degree) were generated by Inverse Distance Weighted (IDW) interpolation using the '<em>IDW interpolation'</em> tool with the following settings: distance coefficient P = 1.0 and pixel size (x and y) = 0.0015 degree. Tiles were then merged into a single tile using the raster<em> 'Merge'</em> tool. The initial point grid footprint was manually delineated to define the spatial applicability zone of the airborne survey. A buffer zone corresponding to half plus 10% of the longest distance between two airborne points (x = 0.002, y = 0.003), i.e. 0.0017 degree, was generated using the '<em>buffer'</em> tool. The single tile was then cut according to the footprint of the buffer zone using the <em>'clip a raster by a mask layer'</em> tool. A <em>single-band pseudo-colour </em>scale is provided and displays pixels with a value above 1000 Bq m<sup>-2</sup> (eq. global background).</p>
Data from: Intraspecific DNA contamination distorts subtle population structure in a marine fish: decontamination of herring samples before restriction-site associated (RAD) sequencing and its effects on population genetic statistics
Wild specimens are often collected in challenging field conditions, where samples may be contaminated with the DNA of conspecific individuals. This contamination can result in false genotype calls, which are difficult to detect, but may also cause inaccurate estimates of heterozygosity, allele frequencies, and genetic differentiation. Marine broadcast spawners are especially problematic, because population genetic differentiation is low and samples are often collected in bulk and sometimes from active spawning aggregations. Here, we used contaminated and clean Pacific herring (Clupea pallasi) samples to test (i) the efficacy of bleach decontamination, (ii) the effect of decontamination on RAD genotypes, and (iii) the consequences of contaminated samples on population genetic analyses. We collected fin tissue samples from actively spawning (and thus contaminated) wild herring and non-spawning (uncontaminated) herring. Samples were soaked for 10 minutes in bleach or left untreated, and extracted DNA was used to prepare DNA libraries using a restriction-site associated DNA (RAD) approach. Our results demonstrate that intraspecific DNA contamination affects patterns of individual and population variability, causes an excess of heterozygotes, and biases estimates of population structure. Bleach decontamination was effective at removing intraspecific DNA contamination and compatible with RAD sequencing, producing high-quality sequences, reproducible genotypes, and low levels of missing data. Although sperm contamination may be specific to broadcast spawners, intraspecific contamination of samples may be common and difficult to detect from high-throughput sequencing data, and can impact downstream analyses.
Phylogenomics on Klebsormidiophyceae: Assemblies, SuperTranscripts, BUSCO, Transdecoder, Decontamination, Orthofinder, PhyloPyPruner, Prequal, and concatenated Alignment
<p>Files used for the phylogenomic analysis of Klebsormidiophyceae</p>
IWC : Test Data For VGP Decontamination Workflow
<p>Dataset used to test the decontamination workflow published with the VGP assembly pipeline in Galaxy. </p>
Figure 1 in Recreational watercraft decontamination: can current recommendations reduce aquatic invasive species spread?
Figure 1. Air-drying conditions within recommended durations, producing 100% mortality.
Open Data_Remedial trial of sequential anoxic_oxic chemico_biological treatment for decontamination of extreme hexachlorocyclohexane concentrations in polluted soil
<p>Open data sheet used for the preparation of the publication "Remedial trial of sequential anoxic/oxic chemico-biological treatment for decontamination of extreme hexachlorocyclohexane concentrations in polluted soil" containing graphs and other data</p>
buteogallus_lacernulatus assembly and decontamination steps
<p>Note: the specimen was originally misidentified as chelictinia_riocourii and the genome submitted to Genbank as chelictinia_riocourii.</p> <p>The error was found afterwards and corrected. The genome was re-submitted as a new record.</p> <p>The chelictinia_riocourii genome will be submitted as version 2 when a specimen can be obtained.</p> <p> </p>
Gut Decontamination In Pediatric Allogeneic Hematopoietic
ClinicalTrials.gov study NCT02641236. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from: Sustainable wastewater decontamination of chlortetracycline using kaolin-alginates beads: Practical applications and adsorption mechanisms
Open the record for dataset details and reuse information.
Data from: Intraspecific DNA contamination distorts subtle population structure in a marine fish: decontamination of herring samples before restriction-site associated (RAD) sequencing and its effects on population genetic statistics
Open the record for dataset details and reuse information.
Data from: Factors associated with possession of accurate knowledge regarding occupational health management among operations leaders of radiation decontamination workers in Fukushima, Japan: a cross-sectional study
Objectives: An operations leader (OL) takes an important role in occupational health management for radiation decontamination workers in Japan, and candidates for the position must participate in a training session to acquire the necessary knowledge as required by law. However, it has not been clarified whether the candidates for the OL position actually possess accurate knowledge regarding occupational health management for such work after the training session. We therefore aimed at examining the current occupational health management knowledge among the candidates and investigating factors related to the knowledge, with hypothesis that possession of accurate knowledge is associated with prior experience of having worked in radiation decontamination. Design: A cross-sectional study. Setting: The training sessions held by Fukushima Prefecture Labor Standard Associations in Fukushima, Japan, in 2017. Participants: Eighty male candidates participated in the training sessions. Outcome: The number/proportion of correct answers to the questions regarding occupational health management such as those on working environment management, control of operations, and health management. Results: The proportion of those who possessed accurate knowledge regarding working environment management, control of operations, and health management, was 68.8%, 55.0%, and 51.2%, respectively. Experience of radiation decontamination work was associated with the possession of inaccurate knowledge regarding working environment management (OR 0.140 [95% CI 0.042, 0.464]), and the uncertainty of future radiation decontamination work schedules in difficult-to-return zones was associated with the possession of accurate knowledge regarding health management (OR 4.382 [95% CI 1.525, 12.591]). Conclusions: Previous experience in radiation decontamination work may hinder the ability to acquire accurate information regarding working environment management among candidates for an OL position. To promote adequate occupational health management for radiation decontamination workers, it is required to establish an effective instructional method for the OL candidate training sessions with consideration of previous relevant experience.
Brustiarius nox RB0369 NOVOGENE decontaminated FSCR
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Bartramia longicauda decontaminated FSCR
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Brevimyrus niger decontaminated FSCR
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Aratinga solstitialis decontaminated FSCR
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Aspidoras spilotus decontaminated FSCR.fasta
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International Brain Laboratory public data
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OpenNeuro
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