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22
datasets available to search
ShareScore release 0.9.0
Dataset results
22 results for “depletion interactions”
Supplementary material to: Long-term (bio)deterioration of Fe-containing and Fe-depleted sandstones: An experimental insight into biotic and abiotic interactions.
<p>This dataset includes: micorphotographs, scanning electron microscope images and related EDS spectra, thermal analysis (DSC-TG), grain size distribution. Abbreviations used in the supplementary file names refer to: GMB (growth medium inoculated with the bacteria, Pseudomonas fluorescens), GM (sterile growth medium), ARE (artificial root exudates), H2O (water), NR (Sample Nowa Ruda), Z (Sample Żerkowice ŻR).</p>
Basic helix-loop-helix pioneer factors interact with the histone octamer to invade nucleosomes and generate nucleosome depleted regions.
<p>This dataset includes all time traces from single-molecule experiments as well as raw gel images used in the manuscript. All time traces from single-molecule experiments and can be viewed using vbFRET (https://vbfret.sourceforge.net/). </p>
Haase et al. 2020 - Sensitivity of the southern hemisphere circumpolar jet response to Antarctic ozone depletion: prescribed versus interactive chemistry
<p>Model data to reproduce the figures in Haase et al. "Sensitivity of the southern hemisphere circumpolar jet response to Antarctic ozone depletion: prescribed versus interactive chemistry" submitted to ACP in May 2020. These are based on NCAR's CESM1(WACCM) model with and without interactive chemistry. Detailed information on the model setup is to find in Haase et al. and references therein (https://doi.org/10.5194/acp-2020-441).</p> <p>Version 1.1 is associated with the first revision of the manuscript (September 2020) that led to an additional figure (new Figure 10) in the paper. For details see additional notes.</p>
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation.
GEO Series GSE263641. Homo sapiens. 137 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (HiC)
GEO Series GSE242396. Saccharomyces cerevisiae. 6 samples. Type: Other.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [RNA-seq]
GEO Series GSE263639. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (RNA)
GEO Series GSE242399. Saccharomyces cerevisiae. 2 samples. Type: Expression profiling by high throughput sequencing.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Tri-C]
GEO Series GSE263640. Homo sapiens. 21 samples. Type: Other.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions
GEO Series GSE242400. Saccharomyces cerevisiae. 82 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Skipper analysis of RNA-protein interactions highlights depletion of genetic variation in translation factor binding sites
GEO Series GSE213867. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing; Other.
Interaction between nighttime MSTID and mid-latitude field-aligned plasma depletion over the transition region of geomagnetic low-mid latitude: First results from Hanle, India
<p>630.0 nm airglow emission data from Hanle all-sky imager</p> <p>Hnale GPS TEC</p> <p>New Delhi Ionograms</p> <p>GIRI Radar Data</p>
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (MeDIP)
GEO Series GSE242398. Saccharomyces cerevisiae. 66 samples. Type: Methylation profiling by high throughput sequencing.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Capture-C]
GEO Series GSE263636. Homo sapiens. 8 samples. Type: Other.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [ChIPmentation]
GEO Series GSE263637. Homo sapiens. 42 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (ChIP)
GEO Series GSE242395. Saccharomyces cerevisiae. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (4C)
GEO Series GSE242394. Saccharomyces cerevisiae. 6 samples. Type: Other.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Micro-Capture-C]
GEO Series GSE263638. Homo sapiens. 60 samples. Type: Other.
A unique case of complex interaction between MSTIDs and mid-latitude field-aligned plasma depletions over geomagnetic low-mid latitude transition region
<p>630.0 nm airglow emission data from Hanle all-sky imager</p> <p>New Delhi Ionograms</p> <p>GIRI Radar Data</p>
Mantle heterogeneity generated by melt depletion and melt-rock interaction: the West Iberian margin peridotites (ODP Legs 149 and 173)
<p>This database contains mineral major and trace element data from the homonymous manuscript of Secchiari et al (submitted to Journal of Petrology). The study is based on IODP material (rock samples) and deals with a petrological and geochemical investigation of mantle samples drilled in the Iberia Abyssal Plain. More specifically the material comes from ODP Leg 149 (Hole 899 B) and Leg 173 (Holes 1068A and 1070A).</p> <p>The folder contains Table 1 and Supplementary Table material (mineral major and trace element data) of the homonymous manuscript of Secchiari et al. submitted to JPET.<br>Mineral major element data were obtained with EMPA, while trace element data were analyzed using LA-ICP-MS. Further details are provided in the related manuscript.<br>The investigated samples are from ODP Holes 899B, 1068A, and 1070A. The geographic coordinates of the Hole locations are provided below:<br>Hole 899B: Lat: 40.766667, Lon: -12.200000<br>Hole 1068A: Lat: 40.683333, Lon: -11.616667<br>Hole 1070A:Lat: 40.800000, Lon: -12.716667<br>Sample location is provided in Table 1.</p> <p> </p> <p><strong>This research was funded by the Italian Ministry of University and Research (MUR) through the grant “ECORD-IODP Italia 2021” attributed to A. Secchiari.</strong></p>
Genome-wide analysis of eIF4G-RNA interaction in CDK12-depleted cells (RIP-Seq)
GEO Series GSE121390. Homo sapiens. 13 samples. Type: Other.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.