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77 results for “ecomorphological data”
Fungi ecomorphological trait data
<p>Ecomorphological trait data for fungi derived from the following sources:</p> <p>Bodensteiner, P., Binder, M., Moncalvo, J.M., Agerer, R. and Hibbett, D.S., 2004. Phylogenetic relationships of cyphelloid homobasidiomycetes. Molecular Phylogenetics and Evolution, 33(2), pp.501-515. <a href="https://doi.org/10.1016/j.ympev.2004.06.007">https://doi.org/10.1016/j.ympev.2004.06.007 </a></p> <p>Diederich, P., Lawrey, J.D., Ertz, D., 2018. The 2018 classification and checklist of lichenicolous fungi, with 2000 non-lichenized, obligately lichenicolous taxa. The Bryologist 121, 340–425. <a href="https://doi.org/10.1639/0007-2745-121.3.340">https://doi.org/10.1639/0007-2745-121.3.340 </a></p> <p>Hassett, B., Vonnahme, T., Peng, X., Jones, E. and Heuzé, C. (2020) Global diversity and geography of planktonic marine fungi. Botanica Marina, Vol. 63 (Issue 2), pp. 121-139. <a href="https://doi.org/10.1515/bot-2018-0113">https://doi.org/10.1515/bot-2018-0113 </a></p> <p>He, M.-Q., Zhao, R.-L., Hyde, K.D., Begerow, D., Kemler, M., Yurkov, A., McKenzie, E.H.C., Raspé, O., Kakishima, M., Sánchez-Ramírez, S., Vellinga, E.C., Halling, R., Papp, V., Zmitrovich, I.V., Buyck, B., Ertz, D., Wijayawardene, N.N., Cui, B.-K., Schoutteten, N., Liu, X.-Z., Li, T.-H., Yao, Y.-J., Zhu, X.-Y., Liu, A.-Q., Li, G.-J., Zhang, M.-Z., Ling, Z.-L., Cao, B., Antonín, V., Boekhout, T., da Silva, B.D.B., De Crop, E., Decock, C., Dima, B., Dutta, A.K., Fell, J.W., Geml, J., Ghobad-Nejhad, M., Giachini, A.J., Gibertoni, T.B., Gorjón, S.P., Haelewaters, D., He, S.-H., Hodkinson, B.P., Horak, E., Hoshino, T., Justo, A., Lim, Y.W., Menolli, N., Mešić, A., Moncalvo, J.-M., Mueller, G.M., Nagy, L.G., Nilsson, R.H., Noordeloos, M., Nuytinck, J., Orihara, T., Ratchadawan, C., Rajchenberg, M., Silva-Filho, A.G.S., Sulzbacher, M.A., Tkalčec, Z., Valenzuela, R., Verbeken, A., Vizzini, A., Wartchow, F., Wei, T.-Z., Weiß, M., Zhao, C.-L., Kirk, P.M., 2019. Notes, outline and divergence times of Basidiomycota. Fungal Diversity 99, 105–367. <a href="https://doi.org/10.1007/s13225-019-00435-4">https://doi.org/10.1007/s13225-019-00435-4 </a></p> <p>Hosaka, K., Bates, S.T., Beever, R.E., Castellano, M.A., Colgan III, W., Domínguez, L.S., Nouhra, E.R., Geml, J., Giachini, A.J., Kenney, S.R. and Simpson, N.B., 2006. Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders. Mycologia, 98(6), pp.949-959. <a href="https://doi.org/10.1080/15572536.2006.11832624">https://doi.org/10.1080/15572536.2006.11832624</a></p> <p>Riccioni C, Belfiori B, Rubini A, Bucci G, Ianigro M (2024). Dataset of endophytic and forest fungi (IBBR-CNR-FABI-01). Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Occurrence dataset <a href="https://doi.org/10.15468/arjsuy">https://doi.org/10.15468/arjsuy</a> accessed via GBIF.org on 2025-01-14.</p> <p>Wijayawardene, N.N., Hyde, K.D., Rajeshkumar, K.C., Hawksworth, D.L., Madrid, H., Kirk, P.M., Braun, U., Singh, R.V., Crous, P.W., Kukwa, M., Lücking, R., Kurtzman, C.P., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, H.T., Timdal, E., Ertz, D., Etayo, J., Phillips, A.J.L., Groenewald, J.Z., Papizadeh, M., Selbmann, L., Dayarathne, M.C., Weerakoon, G., Jones, E.B.G., Suetrong, S., Tian, Q., Castañeda-Ruiz, R.F., Bahkali, A.H., Pang, K.-L., Tanaka, K., Dai, D.Q., Sakayaroj, J., Hujslová, M., Lombard, L., Shenoy, B.D., Suija, A., Maharachchikumbura, S.S.N., Thambugala, K.M., Wanasinghe, D.N., Sharma, B.O., Gaikwad, S., Pandit, G., Zucconi, L., Onofri, S., Egidi, E., Raja, H.A., Kodsueb, R., Cáceres, M.E.S., Pérez-Ortega, S., Fiuza, P.O., Monteiro, J.S., Vasilyeva, L.N., Shivas, R.G., Prieto, M., Wedin, M., Olariaga, I., Lateef, A.A., Agrawal, Y., Fazeli, S.A.S., Amoozegar, M.A., Zhao, G.Z., Pfliegler, W.P., Sharma, G., Oset, M., Abdel-Wahab, M.A., Takamatsu, S., Bensch, K., de Silva, N.I., De Kesel, A., Karunarathna, A., Boonmee, S., Pfister, D.H., Lu, Y.-Z., Luo, Z.-L., Boonyuen, N., Daranagama, D.A., Senanayake, I.C., Jayasiri, S.C., Samarakoon, M.C., Zeng, X.-Y., Doilom, M., Quijada, L., Rampadarath, S., Heredia, G., Dissanayake, A.J., Jayawardana, R.S., Perera, R.H., Tang, L.Z., Phukhamsakda, C., Hernández-Restrepo, M., Ma, X., Tibpromma, S., Gusmao, L.F.P., Weerahewa, D., Karunarathna, S.C., 2017. Notes for genera: Ascomycota. Fungal Diversity 86, 1–594. <a href="https://doi.org/10.1007/s13225-017-0386-0">https://doi.org/10.1007/s13225-017-0386-0</a></p>
Spreadsheet Template for Fungi Ecomorphological Trait Data
<p>Spreadsheet template for <a href="https://doi.org/10.5281/zenodo.14647411">Fungi ecomorphological trait data</a></p>
Data associated with: Global ecomorphological restructuring of dominant marine reptiles prior to the K/Pg mass extinction
<p>Mosasaurid squamates were the dominant amniote predators in marine ecosystems during most of the Late Cretaceous. Here, we use a suite of biomechanically rooted, functionally descriptive ratios in a framework adapted from population ecology to investigate how the morphofunctional disparity of mosasaurids evolved prior to the Cretaceous-Paleogene (K/Pg) mass extinction. Our results suggest that taxonomic turnover in mosasaurid community composition from Campanian to Maastrichtian is reflected by a notable global increase in morphofunctional disparity, especially driven the North American record. Ecomorphospace occupation becomes polarised during the Late Maastrichtian, with morphofunctional disparity plateauing in the Southern Hemisphere and decreasing in the Northern Hemisphere. We show that these changes are not strongly associated with mosasaurid size, but rather with the functional capacities of their skulls. Our novel approach indicates that mosasaurid morphofunctional disparity was in decline in multiple provincial communities before the K-Pg mass extinction, highlighting region-specific patterns of disparity evolution and the importance of assessing vertebrate extinctions both globally and locally. Ecomorphological differentiation in mosasaurid communities, coupled with declines in other formerly abundant marine reptile groups, indicates widespread restructuring of higher trophic levels in marine food webs was well underway when the K/Pg mass extinction took place.</p>
Data from: Periodic environmental disturbance drives repeated ecomorphological diversification in an adaptive radiation of Antarctic fishes
<p><span>The ecological theory of adaptive radiation has profoundly shaped our conceptualization of the rules that govern diversification. However, while many radiations follow classic early burst patterns of diversification as they fill ecological space, the longer-term fates of these radiations depend on many factors, such as climatic stability. In systems with periodic disturbances, species-rich clades can contain nested adaptive radiations of subclades with their own distinct diversification histories, and how adaptive radiation theory applies in these cases is less clear. Here, we investigated patterns of ecological and phenotypic diversification within two iterative adaptive radiations of cryonotothenioid fishes in Antarctica's Southern Ocean: crocodile icefishes and notoperches. For both clades, we observe evidence of repeated diversification into disparate regions of trait space between closely related taxa and into overlapping regions of trait space between distantly related taxa. We additionally find little evidence that patterns of ecological divergence are correlated with evolution of morphological disparity, suggesting that these axes of divergence may not be tightly linked. Finally, we reveal evidence of repeated convergence in sympatry that suggests niche complementarity. These findings reflect the dynamic history of Antarctic marine habitats, and may guide hypotheses of diversification dynamics in environments characterized by periodic disturbance.</span></p>
Data from: Periodic environmental disturbance drives repeated ecomorphological diversification in an adaptive radiation of Antarctic fishes
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Data from: Selection and constraints in the ecomorphological adaptive evolution of the skull of living Canidae (Carnivora, Mammalia)
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Data associated with: Global ecomorphological restructuring of dominant marine reptiles prior to the K/Pg mass extinction
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Data from: The early elasmobranch Phoebodus: phylogenetic relationships, ecomorphology, and a new time-scale for shark evolution
Anatomical knowledge of early chondrichthyans and estimates of their phylogeny are improving, but many taxa are still known only from microremains. The nearly cosmopolitan and regionally abundant Devonian genus Phoebodus has long been known solely from isolated teeth and fin spines. Here, we report the first skeletal remains of Phoebodus from the Famennian (Late Devonian) of the Maïder region of Morocco, revealing an anguilliform body, specialized braincase, hyoid arch, elongate jaws and rostrum, complementing its characteristic dentition and ctenacanth fin spines preceding both dorsal fins. Several of these features corroborate a likely close relationship with the Carboniferous species Thrinacodus gracia, and phylogenetic analysis places both taxa securely as members of the elasmobranch stem lineage. Identified as such, phoebodont teeth provide a plausible marker for range extension of the elasmobranchs into the Middle Devonian, thus providing a new minimum date for the origin of the chondrichthyan crown-group. Among pre-Carboniferous jawed vertebrates, the anguilliform body shape of Phoebodus is unprecedented, and its specialized anatomy is, in several respects, most easily compared with the modern frilled shark Chlamydoselachus. These results add greatly to the morphological, and by implication ecological, disparity of the earliest elasmobranchs.
Data from: Climate, competition, and the rise of mosasauroid ecomorphological disparity
Mosasauroidea, important marine lizards (Squamata, Toxicofera) of the final 30 million years of the Cretaceous, have been extensively studied for their morphology, ecology, and systematics in the past two centuries. However, the relative roles of biological and physical processes as drivers of their morphological diversification remains uncertain. Here we investigate the macroevolution of mosasauroid feeding and locomotory disparity using continuous characters measured from the mandible and forelimb. Patterns of morphospace occupation demonstrate important roles for innovation and niche partitioning in driving morphological disparity. The early evolution of Mosasauroidea is characterised by strong shifts in morphology, demonstrating the importance of elongation of the mandibular biting area and hydropedality. The later diversification of derived Mosasaurinae and Plioplatecarpinae is associated with a great expansion of morphospace, attributed to the acquisition of novel feeding and locomotory strategies. Temporally, disparity follows a top-heavy profile, possibly reflecting opportunism in the wake of the Cenomanian–Turonian anoxic event. The highest levels of disparity are found in the latest Cretaceous, caused by the radiation of derived mosasaurids alongside the persistence of more basal forms. Major morphological innovations are not associated with evolutionary rate shifts, which differentiates them from earlier marine reptiles, and may reflect constant and greater niche occupation in Late Cretaceous oceans. Linear modelling of potential physical drivers indicates a minor role for these processes, suggesting that biological drivers were the primary sculptors of mosasauroid morphological disparity.
Data from: Cenozoic climate change and the evolution of North American mammalian predator ecomorphology
<p>The trend of global cooling across the Cenozoic transformed the North American landscape from closed forest to more open grasslands, resulting in dietary adaptations in herbivores in response to shifting resources. In contrast, the material properties of the predator food source, muscle, skin, and bone, have remained constant over this transition, suggesting a corresponding lack of change in predator dietary adaptations. We investigate the North American mammal predator fossil record using a tooth shape metric and body mass, predicting that the former would exhibit stability. Instead, we found that mean molar morphology became more blade-like, with our tooth shape metric sharply increasing in the late Eocene and remaining high from the Oligocene onward. Subsequent tests in extant carnivorans reveal taxa with more blade-like teeth are prevalent in more open environments. Our results reveal an unexpected functional shift among North American predators in response to large-scale environmental changes across the Cenozoic.</p>
Trait Spreadsheet to DwCA: Fungi ecomorphological trait data
<p></p>https://eol-jira.bibalex.org/browse/DATA-1882<p></p>Created: 2023-05-08 10:16
Trait Spreadsheet to DwCA: Fungi ecomorphological trait data
<p></p>https://eol-jira.bibalex.org/browse/DATA-1882<p></p>Created: 2023-05-05 15:46
Data from: Ecomorphological and phylogenetic controls on sympatry across extant bats
Aim: Macroecological patterns of sympatry can inform our understanding of how ecological and evolutionary processes govern species distributions. Following speciation, both intrinsic and extrinsic factors may determine how readily sympatry occurs. One possibility is that sympatry most readily occurs with ecological divergence, especially if broad-scale co-occurrence is mediated by niche differentiation. Time since divergence may also predict sympatry if hybridization and gene flow lead to the collapse of species boundaries between closely-related taxa. Here, we test for ecological and phylogenetic predictors of sympatry across the global radiation of extant bats. Location: Global Taxon: Bats (Order Chiroptera) Methods: We used a combination of linear mixed modeling, simulations, and maximum-likelihood modeling to test whether phylogenetic and ecomorphological divergence between species predict sympatry. We further assess how these relationships vary based on biogeographic realm. Results: We find that time since divergence does not predict sympatry in any biogeographic realm. Morphological divergence is negatively related to sympatry in the Neotropics, but shows no relationship with sympatry elsewhere. Main conclusions: We find that bats in most biogeographic realms co-occur at broad spatial scales regardless of phylogenetic similarity. Neotropical bats, however, appear to co-occur most readily when morphologically similar. To the extent that pairwise phylogenetic and morphological divergence reflect ecological differentiation, our results suggest that abiotic and environmental factors may be more important than species interactions in determining patterns of sympatry across bats.
Data from: Cenozoic climate change and the evolution of North American mammalian predator ecomorphology
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Data from: The early elasmobranch Phoebodus: phylogenetic relationships, ecomorphology, and a new time-scale for shark evolution
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Data from: Climate, competition, and the rise of mosasauroid ecomorphological disparity
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Data from: Salamander ecomorphology reveals a unique suite of climbing adaptations
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Data from: What determines the distinct morphology of species with a particular ecology? The roles of many-to-one mapping and trade-offs in the evolution of frog ecomorphology and performance
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Data from: Ecomorphological and phylogenetic controls on sympatry across extant bats
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Data from: Towards a functional understanding of species coexistence: ecomorphological variation in relation to whole-organism performance in two sympatric lizards
1. We examined intra- and interspecific variation in functional morphology and whole-organism performance in a sympatric lizard species pair, Iberolacerta horvathi and Podarcis muralis, in the area with a high potential for competition. 2. The biggest variation between species was found in two functional traits, bite force and climbing speed, linked with corresponding morphological traits. 3. The species with larger and taller heads, P. muralis, exhibited correspondingly stronger bite forces. The other species exhibited smaller and flatter head. Both traits may potentially promote segregation between species in trophic niche (stronger bites relate to harder prey) and in refuge use (flatter heads allow using narrower crevices, hence, influencing escaping from common predators). Stronger bites and larger heads also provide one species with a dominant position in interspecific agonistic interactions. 4. Females had longer trunks that impacted negatively on climbing speed, which may lower anti-predator escape abilities of the more trunk-dimorphic species, but positively influence reproductive effort. 5. Our results exemplify how the joint examination of morphological and functional traits of ecologically similar and sympatric species can provide a mechanistic background for understanding their coexistence, namely syntopic populations that are frequent in the study area. 6. The identified roles of functional morphology in this system of sympatric rock lizards support the contribution of functional diversification for the complexity of community structure via coexistence.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.