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18 results for “eln”
Chemotion ELN Erklärvideos
<p><strong>Chemotion ELN Erklärvideos</strong></p> <p>Chemotion<sup>[1]</sup> ist ein Open-Source-System für die Speicherung und Verwaltung von Experimenten und Moleküldaten in der Chemie und deren angrenzenden Wissenschaften. Dabei besteht das System hauptsächlich aus zwei Komponenten: dem elektronischen Laborjournal (<em>electronic laboratory notebook</em>, ELN) Chemotion ELN<sup>[2]</sup> zur Eintragung und Auswertung von Experimenten und deren Analytik-Daten und dem Chemotion-Repositorium<sup>[3,4]</sup> zur Veröffentlichung dieser. Durch die Verknüpfung des ELNs mit dem Repositorium können Einträge einfach aus dem Laborbuch transferiert werden. Daten werden inklusive ihrer maschinenlesbaren Metadaten in dem Repositorium unter Open-Access-Bedingungen veröffentlicht und erfüllen somit die FAIR-Data-Prinzipien (<em>findable, accessible, interoperable, reusable</em>).<sup>[5]</sup> Diese dienen als Grundlage für nachhaltiges Datenmanagement im Rahmen der guten wissenschaftlichen Praxis.<sup>[6]</sup></p> <p>Zur Nutzung von Chemotion und zur Erläuterung der grundlegenden Funktionen haben wir Erklärvideos erstellt, die Neulingen den Einstieg in das ELN erleichtern sollen. Diese Videos umfassen wichtige Themen von der Erstellung von Molekülen, über die Auswertung von Analytik-Daten, bis hin zum Teilen von Einträgen. Die Videos sind dabei in verschiedene Themenblöcke aufgeteilt und befassen sich jeweils mit konkreten Funktionen. Die Struktur der Themenblöcke und Videos können dem PDF-Dokument in diesem Zenodo-Eintrag entnommen werden. Wir bitten zu beachten, dass grau hinterlegte Videos in diesem Dokument erst in späteren Versionen des Eintrags zur Verfügung stehen werden.</p> <p><strong>Chemotion ELN Erklärvideos auf YouTube</strong></p> <p>Die Erklärvideos gibt es zusätzlich auch auf Chemotions YouTube Channel: <a href="https://www.youtube.com/playlist?list=PL1AonKd9WAd8n8YPXxMaGLQ5ad8PdR3OC">https://www.youtube.com/playlist?list=PL1AonKd9WAd8n8YPXxMaGLQ5ad8PdR3OC</a></p> <p><strong>Danksagung</strong></p> <p>Die Autoren danken Nicole Jung für weiterführende Erklärungen zu den Funktionen von Chemotion und die Hilfe bei der Erstellung und Überarbeitung der Videos. Weiterhin danken die Autoren Anna Manukânc für die Hilfe bei der konzeptionellen Entwicklung der Videos.</p> <p><strong>Literatur</strong></p> <p>[1] Chemotion. <a href="https://chemotion.net/">https://chemotion.net/</a> (accessed 02/19/2023).</p> <p>[2] Tremouilhac, P., Nguyen, A., Huang, Y.-C., Kotov, S., Lütjohann, D. S., Hübsch, F., Jung, N., Bräse, S., <em>J. Cheminform. </em><strong>2017,</strong> <em>9</em>, 54.</p> <p>[3] Tremouilhac, P., Lin, C.-L., Huang, P.-C., Huang, Y.-C., Nguyen, A., Jung, N., Bach, F., Ulrich, R., Neumair, B., Streit, A., Bräse, S., <em>Angew. Chem. Int. Ed. </em><strong>2020,</strong> <em>59</em>, 22771-22778; <em>Angew. Chem. </em><strong>2020,</strong> <em>132</em>, 22960-22968.</p> <p>[4] Tremouilhac, P., Huang, P.-C., Lin, C.-L., Huang, Y.-C., Nguyen, A., Jung, N., Bach, F., Bräse, S., <em>Chemistry–Methods </em><strong>2021,</strong> <em>1</em>, 8-11.</p> <p>[5] Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A., Gray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., ’t Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S.-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J., Mons, B., <em>Sci. </em><em>Data </em><strong>2016,</strong> <em>3</em>, 160018.</p> <p>[6] Deutsche Forschungsgemeinschaft. <em>Guidelines for Safeguarding Good Research Practice. Code of Conduct</em>. <strong>2019</strong>, <a href="https://doi.org/10.5281/zenodo.3923602">https://doi.org/10.5281/zenodo.3923602</a>.</p> <p><strong>Nützliche Links</strong></p> <p>Chemotion. <a href="https://chemotion.net/">https://chemotion.net/</a> (accessed 02/19/2023).</p> <p>Chemotion ELN Documentation. <a href="https://chemotion.net/docs/eln/">https://chemotion.net/docs/eln/</a> (accessed 02/19/2023).</p> <p>Chemotion Repository. <a href="https://www.chemotion-repository.net/welcome">https://www.chemotion-repository.net/welcome</a> (accessed 03/14/2022).</p> <p>Molecule Archive of the Compound Platform. <a href="https://compound-platform.eu/home">https://compound-platform.eu/home</a> (accessed 03/14/2022).</p>
Chemotion ELN Instruction Videos
<p><strong>Chemotion ELN Instruction Videos</strong></p> <p>Chemotion<sup>[1]</sup> is an open source system for storing and managing experiments and molecular data in chemistry and its related sciences. The system mainly consists of two components: the electronic laboratory notebook (ELN) Chemotion ELN<sup>[2]</sup> for recording and evaluating experiments and their analytical data, and the Chemotion repository<sup>[3,4]</sup> for publishing these data. As the ELN is linked to the repository, entries can be easily transferred from the lab journal to the repository. Data, including their machine-readable metadata, are published in the repository under open access conditions and thus fulfill the FAIR data principles (findable, accessible, interoperable, reusable).<sup>[5]</sup> These principles serve as a foundation for sustainable data management within the framework of good scientific practice.<sup>[6]</sup></p> <p>For the use of Chemotion and to explain its basic functions, we created explanatory videos to help newcomers getting started with the ELN. These videos cover important topics from creating molecules, to evaluating analytic data, to sharing entries. The videos are divided into different topic blocks and deal in each case with specific functions. The structure of the topic blocks and videos is provided in the PDF document in this Zenodo entry. Please note that entries with a gray background in this document will only be available in later versions of the Zenodo entry.</p> <p><strong>Chemotion ELN Instruction Videos on YouTube</strong></p> <p>Find the instruction videos additionally on Chemotion's YouTube channel: <a href="https://www.youtube.com/playlist?list=PL1AonKd9WAd8cDjzXGiNu0ndoctNu0izs">https://www.youtube.com/playlist?list=PL1AonKd9WAd8cDjzXGiNu0ndoctNu0izs</a></p> <p><strong>Acknowledgement</strong></p> <p>First and foremost, the authors would like to thank Nicole Parks for recording the English audio tracks. The authors are grateful to Nicole Jung for further explanations of Chemotion's features and help in creating and revising the videos. Furthermore, the authors would like to thank Anna Manukânc for her help with the conceptual development of the videos.</p> <p><strong>Literature</strong></p> <p>[1] Chemotion. <a href="https://chemotion.net/">https://chemotion.net/</a> (accessed 02/19/2023).</p> <p>[2] Tremouilhac, P., Nguyen, A., Huang, Y.-C., Kotov, S., Lütjohann, D. S., Hübsch, F., Jung, N., Bräse, S., <em>J. Cheminform. </em><strong>2017,</strong> <em>9</em>, 54.</p> <p>[3] Tremouilhac, P., Lin, C.-L., Huang, P.-C., Huang, Y.-C., Nguyen, A., Jung, N., Bach, F., Ulrich, R., Neumair, B., Streit, A., Bräse, S., <em>Angew. Chem. Int. Ed. </em><strong>2020,</strong> <em>59</em>, 22771-22778; <em>Angew. Chem. </em><strong>2020,</strong> <em>132</em>, 22960-22968.</p> <p>[4] Tremouilhac, P., Huang, P.-C., Lin, C.-L., Huang, Y.-C., Nguyen, A., Jung, N., Bach, F., Bräse, S., <em>Chemistry–Methods </em><strong>2021,</strong> <em>1</em>, 8-11.</p> <p>[5] Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A., Gray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., ’t Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S.-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J., Mons, B., <em>Sci. </em><em>Data </em><strong>2016,</strong> <em>3</em>, 160018.</p> <p>[6] Deutsche Forschungsgemeinschaft. <em>Guidelines for Safeguarding Good Research Practice. Code of Conduct</em>. <strong>2019</strong>, <a href="https://doi.org/10.5281/zenodo.3923602">https://doi.org/10.5281/zenodo.3923602</a>.</p> <p><strong>Useful Links</strong></p> <p>Chemotion. <a href="https://chemotion.net/">https://chemotion.net/</a> (accessed 02/19/2023).</p> <p>Chemotion ELN Documentation. <a href="https://chemotion.net/docs/eln/">https://chemotion.net/docs/eln/</a> (accessed 02/19/2023).</p> <p>Chemotion Repository. <a href="https://www.chemotion-repository.net/welcome">https://www.chemotion-repository.net/welcome</a> (accessed 02/13/2023).</p> <p>Molecule Archive of the Compound Platform. <a href="https://compound-platform.eu/home">https://compound-platform.eu/home</a> (accessed 02/13/2023).</p>
Using ELN Functionality of Kadi4Mat (KadiWeb) in a Materials Science Case Study of a User Facility
<p>This record contains the dataset belonging to the paper "Using ELN Functionality of Kadi4Mat (KadiWeb) in a Materials Science Case Study of a User Facility"</p>
Épitaphe du chanoine Berenguer de Codalet - Elne
Épitaphe du chanoine Berenguer de Codalet Une description de Louis de Bonnefoy, en 1858, précise que les arcades trilobées étaient "de couleur bleue", Texte de l'inscription : ANNO DOMINI M CCC XV XII KLAS MARCII OBIIT DOMINUS BERENGARIUS DE CODALETO CANONICUS ET SUCCENTOR ECCLESIE ELNE QUI IN EADEM ECCLESIA INSTITUIT SUUM ANNIVERSARIUM CUIUS ANIMA PER MISERICORDIAM DEI REQUIESCAT IN PACE AMEN Traduction : "L'an du Seigneur 1315 (1316), le 12 des calendes de mars (18 février), mourut le seigneur Berenguer de Codalet chanoine et succenteur de l'église d'Elne, qui dans cette église institua son anniversaire. Que son âme, par la miséricorde de Dieu, repose en paix. Amen." Source: Objaverse 1.0 / Sketchfab
Benitier - cathédrale d'Elne
Cathédrale d'Elne. "Ce bloc cylindrique (75x58 cm) est à l'origine un tambour de colonne antique en marbre de Carrare provenant d'un tambour de colonne de monument antique. La feuille d'acanthe qui l'enveloppe typoque du style corinthien. On retrouve dans le cloître d'Elne. La feuille extérieure a été probablement sculptée sur ce bloc dès l'Antiquité. C'est seulement au Moyen Âge que le bloc a été évidé pour être transformé en bénitier. Il est aussi percé d'un orifice au fond, pour sa vidange. La forme de l'évidement, en neuf cannelures de 12 cm de diamètre, est curieuse : on peut les rapprocher des lobes de la table d'autel de 1069, ce qui pourrait être un indice de sa transformation en bénitier au 11e siècle." Texte Aymat Catafau Source: Objaverse 1.0 / Sketchfab
Porte gothique - Cloître d'Elne
Porte reliant le cloître et la cathédrale d'Elne (v 1320) Ce portail gothique a sans doute remplacé une ouverture plus ancienne de style roman. Il est fait d'une alternance de marbre de Céret, blanc veiné de bleu, et de marbre rouge de Villefranche-de-Conflent, bichromie héritée d'une tradition de l'Antiquité tardive, où alternaient brique et calcaire. De style et de dimensions plus modestes, le portail rappelle celui de la chapelle haute du Palais des rois de Majorque de Perpignan, construit un peu avant et qui utilise les mêmes matériaux dans une disposition semblable. Comme lui, ses colonnes sont ornées de chapiteaux en marbre blanc sculptés de végétaux et de dragons. Texte Aymat Catafau Source: Objaverse 1.0 / Sketchfab
Chrisme - Cloître d'Elne
Le chrisme au centre est un fragment de sarcophage, probablement de celui que l'on peut voir aujourd'hui à l'angle sud-est du cloître. Source: Objaverse 1.0 / Sketchfab
BIG-MAP ELN
<p>Demonstration of the OpenSemanticLab capabilities for the documentation of battery testing demonstrated during the BIG-MAP data workshop 2024 in Grindelwald</p>
FAIRmat Tutorial 8: Using NOMAD as an Electronic lab notebook (ELN) for FAIR data
<p>Approaching the era of big data-driven materials science, one crucial step to collecting, describing, and sharing experimental data is the adoption of electronic laboratory notebooks (ELN). At present, most synthesis data are not structured comprehensively or not even stored digitally but in handwritten lab books. The <a href="https://www.fairmat-nfdi.eu/fairmat" target="_blank" rel="noopener">FAIRmat project</a> is offering a solution by developing and operating the open-source software <a href="https://nomad-lab.eu/" target="_blank" rel="noopener">NOMAD</a>. NOMAD provides ELN functionalities that aim for a secure environment to protect the integrity of both data and metadata, whilst also affording the flexibility to adopt new synthetic processes or changes to existing ones without recourse to further software development.</p> <p>In this FAIRmat tutorial, we focus on the usage of NOMAD as an ELN which enables the users to generate data following the FAIR principles. We will show how we adopted NOMAD to capture data from synthesis and experiment and make use of an automated data workflow. The key point here is writing a data schema and its implementation in NOMAD. After defining the used terms, we will start explaining this process by writing a simple schema and then go on to more advanced usage of NOMAD, e.g. using the build in csv/xlsx-file parser, automatized data visualization, adding extra functionality by usage of base classes, referencing to other data entries in NOMAD, and searching your ELN data. The tutorial is aimed at both scientists new to NOMAD and structured data as well as data stewards. Each lecture of the tutorial will be followed directly by a Q&A session and a hands-on tutorial.</p> <p><strong>Disclaimer:</strong> NOMAD is being continuously developed based on input and feedback from the scientific community. Hence the features, services or interface may have changed since the time of recording of this video. For up-to-date information please consult our latest tutorials and the NOMAD documentation <a href="https://nomad-lab.eu/prod/v1/docs/">https://nomad-lab.eu/prod/v1/docs/</a></p>
Fenêtre à vitrail du cloître d'Elne
Ensemble cathédral de la ville d'Elne (Pyrénées-Orientales- Source: Objaverse 1.0 / Sketchfab
Saint Jean, cloître d'Elne
Source: Objaverse 1.0 / Sketchfab
Saint Matthieu, Cloître d'Elne
Source: Objaverse 1.0 / Sketchfab
A ELN-Multicenter Study on Phenotypic Evolution and Clinical Outcomes
ClinicalTrials.gov study NCT07203768. IPD Sharing: Not stated. Countries: 5. Publications: 0.
ELN 2022 in MENAFC ( Middle Eastern or North Coast of Africa ) Patients With Newly AML
ClinicalTrials.gov study NCT06512610. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Saint Luc, Cloître d'Elne
Source: Objaverse 1.0 / Sketchfab
Saint Marc, cloître d'Elne
Source: Objaverse 1.0 / Sketchfab
Gene expression profiling of Elastin (ELN) knock-down in human fibroblast MRC5
GEO Series GSE268042. Homo sapiens. 9 samples. Type: Expression profiling by array.
Gene expression profiles in Elastin (Eln+/-) mouse aorta and aortic valve tissue
GEO Series GSE16012. Mus musculus. 16 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.